Using machine learning to predict bacteremia in urgent care patients on the basis of triage data and laboratory results
Despite advancements in antimicrobial therapies, bacteremia remains a life-threatening condition. Appropriate antimicrobials must be promptly administered to ensure patient survival. However, diagnosing bacteremia based on blood cultures is time-consuming and not something emergency department (ED)...
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Veröffentlicht in: | The American journal of emergency medicine 2024-11, Vol.85, p.80-85 |
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description | Despite advancements in antimicrobial therapies, bacteremia remains a life-threatening condition. Appropriate antimicrobials must be promptly administered to ensure patient survival. However, diagnosing bacteremia based on blood cultures is time-consuming and not something emergency department (ED) personnel are routinely trained to do.
This retrospective cohort study developed several machine learning (ML) models to predict bacteremia in adults initially presenting with fever or hypothermia, comprising logistic regression, random forest, extreme gradient boosting, support vector machine, k-nearest neighbor, multilayer perceptron, and ensemble models. Random oversampling and synthetic minority oversampling techniques were adopted to balance the dataset. The variables included demographic characteristics, comorbidities, immunocompromised status, clinical characteristics, subjective symptoms reported during ED triage, and laboratory data. The study outcome was an episode of bacteremia.
Of the 5063 patients with initial fever or hypothermia from whom blood cultures were obtained, 128 (2.5 %) were diagnosed with bacteremia. We combined 36 selected variables and 10 symptoms subjectively reported by patients into features for analysis in our models. The ensemble model outperformed other models, with an area under the receiver operating characteristic curve (AUROC) of 0.930 and an F1-score of 0.735. The AUROC of all models was higher than 0.80.
The ML models developed effectively predicted bacteremia among febrile or hypothermic patients in the ED, with all models demonstrating high AUROC values and rapid processing times. The findings suggest that ED clinicians can effectively utilize ML techniques to develop predictive models for addressing clinical challenges. |
doi_str_mv | 10.1016/j.ajem.2024.08.045 |
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This retrospective cohort study developed several machine learning (ML) models to predict bacteremia in adults initially presenting with fever or hypothermia, comprising logistic regression, random forest, extreme gradient boosting, support vector machine, k-nearest neighbor, multilayer perceptron, and ensemble models. Random oversampling and synthetic minority oversampling techniques were adopted to balance the dataset. The variables included demographic characteristics, comorbidities, immunocompromised status, clinical characteristics, subjective symptoms reported during ED triage, and laboratory data. The study outcome was an episode of bacteremia.
Of the 5063 patients with initial fever or hypothermia from whom blood cultures were obtained, 128 (2.5 %) were diagnosed with bacteremia. We combined 36 selected variables and 10 symptoms subjectively reported by patients into features for analysis in our models. The ensemble model outperformed other models, with an area under the receiver operating characteristic curve (AUROC) of 0.930 and an F1-score of 0.735. The AUROC of all models was higher than 0.80.
The ML models developed effectively predicted bacteremia among febrile or hypothermic patients in the ED, with all models demonstrating high AUROC values and rapid processing times. The findings suggest that ED clinicians can effectively utilize ML techniques to develop predictive models for addressing clinical challenges.</description><identifier>ISSN: 0735-6757</identifier><identifier>ISSN: 1532-8171</identifier><identifier>EISSN: 1532-8171</identifier><identifier>DOI: 10.1016/j.ajem.2024.08.045</identifier><identifier>PMID: 39243592</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Adult ; Aged ; Algorithms ; Antimicrobial agents ; Artificial intelligence ; Bacteremia ; Bacteremia - diagnosis ; Biochemistry ; Blood ; Body temperature ; Cardiovascular disease ; Chronic obstructive pulmonary disease ; Comorbidity ; Datasets ; Decision making ; Decision trees ; Demographics ; Diabetes ; Emergency department ; Emergency medical care ; Emergency Service, Hospital ; Feature selection ; Female ; Fever ; Fever - diagnosis ; Fever - etiology ; Hospitals ; Humans ; Hypothermia ; Laboratories ; Learning algorithms ; Liver cirrhosis ; Machine Learning ; Male ; Metastasis ; Middle Aged ; Missing data ; Natural language processing ; Patients ; Prediction models ; Predictive model ; Regression analysis ; Retrospective Studies ; Triage - methods ; Variables</subject><ispartof>The American journal of emergency medicine, 2024-11, Vol.85, p.80-85</ispartof><rights>2024</rights><rights>Copyright © 2024. Published by Elsevier Inc.</rights><rights>Copyright Elsevier Limited Nov 2024</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c265t-f827e9e8744d21f6c6d79ccd0787f07d9ec561ecdb93deb1f0cf172c6ce0d2b83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0735675724004340$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39243592$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chiu, Chung-Ping</creatorcontrib><creatorcontrib>Chou, Hsin-Hung</creatorcontrib><creatorcontrib>Lin, Peng-Chan</creatorcontrib><creatorcontrib>Lee, Ching-Chi</creatorcontrib><creatorcontrib>Hsieh, Sun-Yuan</creatorcontrib><title>Using machine learning to predict bacteremia in urgent care patients on the basis of triage data and laboratory results</title><title>The American journal of emergency medicine</title><addtitle>Am J Emerg Med</addtitle><description>Despite advancements in antimicrobial therapies, bacteremia remains a life-threatening condition. Appropriate antimicrobials must be promptly administered to ensure patient survival. However, diagnosing bacteremia based on blood cultures is time-consuming and not something emergency department (ED) personnel are routinely trained to do.
This retrospective cohort study developed several machine learning (ML) models to predict bacteremia in adults initially presenting with fever or hypothermia, comprising logistic regression, random forest, extreme gradient boosting, support vector machine, k-nearest neighbor, multilayer perceptron, and ensemble models. Random oversampling and synthetic minority oversampling techniques were adopted to balance the dataset. The variables included demographic characteristics, comorbidities, immunocompromised status, clinical characteristics, subjective symptoms reported during ED triage, and laboratory data. The study outcome was an episode of bacteremia.
Of the 5063 patients with initial fever or hypothermia from whom blood cultures were obtained, 128 (2.5 %) were diagnosed with bacteremia. We combined 36 selected variables and 10 symptoms subjectively reported by patients into features for analysis in our models. The ensemble model outperformed other models, with an area under the receiver operating characteristic curve (AUROC) of 0.930 and an F1-score of 0.735. The AUROC of all models was higher than 0.80.
The ML models developed effectively predicted bacteremia among febrile or hypothermic patients in the ED, with all models demonstrating high AUROC values and rapid processing times. The findings suggest that ED clinicians can effectively utilize ML techniques to develop predictive models for addressing clinical challenges.</description><subject>Adult</subject><subject>Aged</subject><subject>Algorithms</subject><subject>Antimicrobial agents</subject><subject>Artificial intelligence</subject><subject>Bacteremia</subject><subject>Bacteremia - diagnosis</subject><subject>Biochemistry</subject><subject>Blood</subject><subject>Body temperature</subject><subject>Cardiovascular disease</subject><subject>Chronic obstructive pulmonary disease</subject><subject>Comorbidity</subject><subject>Datasets</subject><subject>Decision making</subject><subject>Decision trees</subject><subject>Demographics</subject><subject>Diabetes</subject><subject>Emergency department</subject><subject>Emergency medical care</subject><subject>Emergency Service, Hospital</subject><subject>Feature selection</subject><subject>Female</subject><subject>Fever</subject><subject>Fever - diagnosis</subject><subject>Fever - etiology</subject><subject>Hospitals</subject><subject>Humans</subject><subject>Hypothermia</subject><subject>Laboratories</subject><subject>Learning algorithms</subject><subject>Liver cirrhosis</subject><subject>Machine Learning</subject><subject>Male</subject><subject>Metastasis</subject><subject>Middle Aged</subject><subject>Missing data</subject><subject>Natural language processing</subject><subject>Patients</subject><subject>Prediction models</subject><subject>Predictive model</subject><subject>Regression analysis</subject><subject>Retrospective Studies</subject><subject>Triage - methods</subject><subject>Variables</subject><issn>0735-6757</issn><issn>1532-8171</issn><issn>1532-8171</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp9kU1r3DAQhkVpaTYff6CHIuilFzv6sCwbeimhTQuBXpqzkEfjjYwtbyW5If8-WjbtoYeexIhnXob3IeQdZzVnvL2eajvhUgsmmpp1NWvUK7LjSoqq45q_JjumpaparfQZOU9pYozzRjVvyZnsRSNVL3bk8T75sKeLhQcfkM5oYzh-5JUeIjoPmQ4WMkZcvKU-0C3uMWQKNiI92OzLkOgaaH7AQiZfhpHm6O0eqbPZUhscne2wRpvX-EQjpm3O6ZK8Ge2c8OrlvSD3X7_8vPlW3f24_X7z-a4C0apcjZ3Q2GOnm8YJPrbQOt0DOKY7PTLtegTVcgQ39NLhwEcGI9cCWkDmxNDJC_LxlHuI668NUzaLT4DzbAOuWzKyNKn7ppOsoB_-Qad1i6FcVyjBlRZMikKJEwVxTSniaA7RLzY-Gc7MUYuZzFGLOWoxrDNFS1l6_xK9DQu6vyt_PBTg0wnA0sVvj9EkKNVCMRARsnGr_1_-M8hzn8U</recordid><startdate>202411</startdate><enddate>202411</enddate><creator>Chiu, Chung-Ping</creator><creator>Chou, Hsin-Hung</creator><creator>Lin, Peng-Chan</creator><creator>Lee, Ching-Chi</creator><creator>Hsieh, Sun-Yuan</creator><general>Elsevier Inc</general><general>Elsevier Limited</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7RV</scope><scope>7T5</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>K9.</scope><scope>KB0</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>NAPCQ</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope></search><sort><creationdate>202411</creationdate><title>Using machine learning to predict bacteremia in urgent care patients on the basis of triage data and laboratory results</title><author>Chiu, Chung-Ping ; 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Appropriate antimicrobials must be promptly administered to ensure patient survival. However, diagnosing bacteremia based on blood cultures is time-consuming and not something emergency department (ED) personnel are routinely trained to do.
This retrospective cohort study developed several machine learning (ML) models to predict bacteremia in adults initially presenting with fever or hypothermia, comprising logistic regression, random forest, extreme gradient boosting, support vector machine, k-nearest neighbor, multilayer perceptron, and ensemble models. Random oversampling and synthetic minority oversampling techniques were adopted to balance the dataset. The variables included demographic characteristics, comorbidities, immunocompromised status, clinical characteristics, subjective symptoms reported during ED triage, and laboratory data. The study outcome was an episode of bacteremia.
Of the 5063 patients with initial fever or hypothermia from whom blood cultures were obtained, 128 (2.5 %) were diagnosed with bacteremia. We combined 36 selected variables and 10 symptoms subjectively reported by patients into features for analysis in our models. The ensemble model outperformed other models, with an area under the receiver operating characteristic curve (AUROC) of 0.930 and an F1-score of 0.735. The AUROC of all models was higher than 0.80.
The ML models developed effectively predicted bacteremia among febrile or hypothermic patients in the ED, with all models demonstrating high AUROC values and rapid processing times. The findings suggest that ED clinicians can effectively utilize ML techniques to develop predictive models for addressing clinical challenges.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>39243592</pmid><doi>10.1016/j.ajem.2024.08.045</doi><tpages>6</tpages></addata></record> |
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subjects | Adult Aged Algorithms Antimicrobial agents Artificial intelligence Bacteremia Bacteremia - diagnosis Biochemistry Blood Body temperature Cardiovascular disease Chronic obstructive pulmonary disease Comorbidity Datasets Decision making Decision trees Demographics Diabetes Emergency department Emergency medical care Emergency Service, Hospital Feature selection Female Fever Fever - diagnosis Fever - etiology Hospitals Humans Hypothermia Laboratories Learning algorithms Liver cirrhosis Machine Learning Male Metastasis Middle Aged Missing data Natural language processing Patients Prediction models Predictive model Regression analysis Retrospective Studies Triage - methods Variables |
title | Using machine learning to predict bacteremia in urgent care patients on the basis of triage data and laboratory results |
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