A two-stage ensemble learning based prediction and grading model for PD-1/PD-L1 inhibitor-related cardiac adverse events: A multicenter retrospective study
•The performance of existing prediction models for immune-related cardiac adverse reactions is relatively low, and there is no graded prediction model for these reactions.•This study presents a novel two-stage ensemble machine-learning strategy for predicting and grading immune-related cardiac adver...
Gespeichert in:
Veröffentlicht in: | Computer methods and programs in biomedicine 2024-10, Vol.255, p.108360, Article 108360 |
---|---|
Hauptverfasser: | , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | |
---|---|
container_issue | |
container_start_page | 108360 |
container_title | Computer methods and programs in biomedicine |
container_volume | 255 |
creator | Cheng, Xitong Wu, Zhaochun Lin, Jierong Wang, Bitao Huang, Shunming Liu, Maobai Yang, Jing |
description | •The performance of existing prediction models for immune-related cardiac adverse reactions is relatively low, and there is no graded prediction model for these reactions.•This study presents a novel two-stage ensemble machine-learning strategy for predicting and grading immune-related cardiac adverse reactions. The proposed method demonstrates good performance.•The two-stage ensemble learning model for predicting and grading immune-related cardiac adverse reactions holds potential clinical application value in preventing and treating patients.
Immune-related cardiac adverse events (ircAEs) caused by programmed cell death protein-1 (PD-1) and programmed death-ligand-1 (PD-L1) inhibitors can lead to fulminant and even fatal consequences. This study aims to develop a prediction and grading model for ircAEs, enabling graded management of patients.
This study utilized medical record systems from two medical institutions to develop a prediction and grading model for ircAEs using ten machine learning algorithms and two variable screening methods. The model was developed based on a two-stage ensemble learning framework. In the first stage, the ircAEs and non-ircAEs cases were classified. In the second stage, ircAEs cases were grouped into grades 1–2 and 3–5. The experiments were evaluated using five-fold cross-validation. The model's prediction performance was assessed using accuracy, precision, recall, F1 value, Brier score, receiver operating characteristic curve area (AUC), and area under the precision-recall curve (AUPR).
615 patients were included in the study. 147 experienced ircAEs, and 44 experienced grade 3–5 ircAEs. The soft voting classifier trained using the variables screened by feature importance ranking performed better than other classifiers in both stages. The average AUC for the first and second stages is 84.18 % and 85.13 %, respectively. In the first stage, the three most important variables are N-terminal B-type natriuretic peptide (NT-proBNP), interleukin-2 (IL-2), and C-reactive protein (CRP). In the second stage, the patient's age, NT-proBNP, and left ventricular ejection fraction (LVEF) are the three most critical variables.
The prediction and grading model of ircAEs based on two-stage ensemble learning established in this study has good performance and potential clinical application. |
doi_str_mv | 10.1016/j.cmpb.2024.108360 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_3095175054</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0169260724003535</els_id><sourcerecordid>3095175054</sourcerecordid><originalsourceid>FETCH-LOGICAL-c237t-f209ab32f8310e6180e123449399361e7880c1ee7e6c22c784689abf08094c1f3</originalsourceid><addsrcrecordid>eNp9kc2OFCEUhYnROD2jL-DCsHRTPfxUAWXcdEYdTTrRha4JBbdaOlVQAtVmnsWXlU6PLt1AuHznXLgHoVeUbCmh4va4tfMybBlhbS0oLsgTtKFKskZ2onuKNhXqGyaIvELXOR8JIazrxHN0xXsquFTdBv3e4fIrNrmYA2AIGeZhAjyBScGHAx5MBoeXBM7b4mPAJjh8SMadL-foYMJjTPjr-4be1mVPsQ8__OBLTE2CyZSqtiY5byw27gQp1y4nCCW_xTs8r1Pxtp4g4QQlxbxAbXMCnMvqHl6gZ6OZMrx83G_Q948fvt19avZf7j_f7faNZVyWZmSkNwNno-KUgKCKAGW8bXve91xQkEoRSwEkCMuYlaoVqgpGokjfWjryG_Tm4ruk-HOFXPTss4VpMgHimjUnfUdlR7q2ouyC2vrYnGDUS_KzSQ-aEn0ORR_1ORR9DkVfQqmi14_-6zCD-yf5m0IF3l0AqL88eUg6Ww_B1qmnOhDtov-f_x-eU55Y</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3095175054</pqid></control><display><type>article</type><title>A two-stage ensemble learning based prediction and grading model for PD-1/PD-L1 inhibitor-related cardiac adverse events: A multicenter retrospective study</title><source>MEDLINE</source><source>Access via ScienceDirect (Elsevier)</source><creator>Cheng, Xitong ; Wu, Zhaochun ; Lin, Jierong ; Wang, Bitao ; Huang, Shunming ; Liu, Maobai ; Yang, Jing</creator><creatorcontrib>Cheng, Xitong ; Wu, Zhaochun ; Lin, Jierong ; Wang, Bitao ; Huang, Shunming ; Liu, Maobai ; Yang, Jing</creatorcontrib><description>•The performance of existing prediction models for immune-related cardiac adverse reactions is relatively low, and there is no graded prediction model for these reactions.•This study presents a novel two-stage ensemble machine-learning strategy for predicting and grading immune-related cardiac adverse reactions. The proposed method demonstrates good performance.•The two-stage ensemble learning model for predicting and grading immune-related cardiac adverse reactions holds potential clinical application value in preventing and treating patients.
Immune-related cardiac adverse events (ircAEs) caused by programmed cell death protein-1 (PD-1) and programmed death-ligand-1 (PD-L1) inhibitors can lead to fulminant and even fatal consequences. This study aims to develop a prediction and grading model for ircAEs, enabling graded management of patients.
This study utilized medical record systems from two medical institutions to develop a prediction and grading model for ircAEs using ten machine learning algorithms and two variable screening methods. The model was developed based on a two-stage ensemble learning framework. In the first stage, the ircAEs and non-ircAEs cases were classified. In the second stage, ircAEs cases were grouped into grades 1–2 and 3–5. The experiments were evaluated using five-fold cross-validation. The model's prediction performance was assessed using accuracy, precision, recall, F1 value, Brier score, receiver operating characteristic curve area (AUC), and area under the precision-recall curve (AUPR).
615 patients were included in the study. 147 experienced ircAEs, and 44 experienced grade 3–5 ircAEs. The soft voting classifier trained using the variables screened by feature importance ranking performed better than other classifiers in both stages. The average AUC for the first and second stages is 84.18 % and 85.13 %, respectively. In the first stage, the three most important variables are N-terminal B-type natriuretic peptide (NT-proBNP), interleukin-2 (IL-2), and C-reactive protein (CRP). In the second stage, the patient's age, NT-proBNP, and left ventricular ejection fraction (LVEF) are the three most critical variables.
The prediction and grading model of ircAEs based on two-stage ensemble learning established in this study has good performance and potential clinical application.</description><identifier>ISSN: 0169-2607</identifier><identifier>ISSN: 1872-7565</identifier><identifier>EISSN: 1872-7565</identifier><identifier>DOI: 10.1016/j.cmpb.2024.108360</identifier><identifier>PMID: 39163785</identifier><language>eng</language><publisher>Ireland: Elsevier B.V</publisher><subject>Aged ; Algorithms ; B7-H1 Antigen - antagonists & inhibitors ; Cardiac adverse events ; Female ; Grading prediction ; Humans ; Immune Checkpoint Inhibitors - adverse effects ; Immunotherapy ; Machine Learning ; Male ; Middle Aged ; Natriuretic Peptide, Brain - blood ; PD-1/PD-L1 inhibitors ; Peptide Fragments ; Programmed Cell Death 1 Receptor - antagonists & inhibitors ; Retrospective Studies ; ROC Curve</subject><ispartof>Computer methods and programs in biomedicine, 2024-10, Vol.255, p.108360, Article 108360</ispartof><rights>2024</rights><rights>Copyright © 2024. Published by Elsevier B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c237t-f209ab32f8310e6180e123449399361e7880c1ee7e6c22c784689abf08094c1f3</cites><orcidid>0009-0002-2228-5521 ; 0009-0005-9938-882X ; 0000-0002-1454-0791</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.cmpb.2024.108360$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>315,781,785,3551,27928,27929,45999</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39163785$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Cheng, Xitong</creatorcontrib><creatorcontrib>Wu, Zhaochun</creatorcontrib><creatorcontrib>Lin, Jierong</creatorcontrib><creatorcontrib>Wang, Bitao</creatorcontrib><creatorcontrib>Huang, Shunming</creatorcontrib><creatorcontrib>Liu, Maobai</creatorcontrib><creatorcontrib>Yang, Jing</creatorcontrib><title>A two-stage ensemble learning based prediction and grading model for PD-1/PD-L1 inhibitor-related cardiac adverse events: A multicenter retrospective study</title><title>Computer methods and programs in biomedicine</title><addtitle>Comput Methods Programs Biomed</addtitle><description>•The performance of existing prediction models for immune-related cardiac adverse reactions is relatively low, and there is no graded prediction model for these reactions.•This study presents a novel two-stage ensemble machine-learning strategy for predicting and grading immune-related cardiac adverse reactions. The proposed method demonstrates good performance.•The two-stage ensemble learning model for predicting and grading immune-related cardiac adverse reactions holds potential clinical application value in preventing and treating patients.
Immune-related cardiac adverse events (ircAEs) caused by programmed cell death protein-1 (PD-1) and programmed death-ligand-1 (PD-L1) inhibitors can lead to fulminant and even fatal consequences. This study aims to develop a prediction and grading model for ircAEs, enabling graded management of patients.
This study utilized medical record systems from two medical institutions to develop a prediction and grading model for ircAEs using ten machine learning algorithms and two variable screening methods. The model was developed based on a two-stage ensemble learning framework. In the first stage, the ircAEs and non-ircAEs cases were classified. In the second stage, ircAEs cases were grouped into grades 1–2 and 3–5. The experiments were evaluated using five-fold cross-validation. The model's prediction performance was assessed using accuracy, precision, recall, F1 value, Brier score, receiver operating characteristic curve area (AUC), and area under the precision-recall curve (AUPR).
615 patients were included in the study. 147 experienced ircAEs, and 44 experienced grade 3–5 ircAEs. The soft voting classifier trained using the variables screened by feature importance ranking performed better than other classifiers in both stages. The average AUC for the first and second stages is 84.18 % and 85.13 %, respectively. In the first stage, the three most important variables are N-terminal B-type natriuretic peptide (NT-proBNP), interleukin-2 (IL-2), and C-reactive protein (CRP). In the second stage, the patient's age, NT-proBNP, and left ventricular ejection fraction (LVEF) are the three most critical variables.
The prediction and grading model of ircAEs based on two-stage ensemble learning established in this study has good performance and potential clinical application.</description><subject>Aged</subject><subject>Algorithms</subject><subject>B7-H1 Antigen - antagonists & inhibitors</subject><subject>Cardiac adverse events</subject><subject>Female</subject><subject>Grading prediction</subject><subject>Humans</subject><subject>Immune Checkpoint Inhibitors - adverse effects</subject><subject>Immunotherapy</subject><subject>Machine Learning</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Natriuretic Peptide, Brain - blood</subject><subject>PD-1/PD-L1 inhibitors</subject><subject>Peptide Fragments</subject><subject>Programmed Cell Death 1 Receptor - antagonists & inhibitors</subject><subject>Retrospective Studies</subject><subject>ROC Curve</subject><issn>0169-2607</issn><issn>1872-7565</issn><issn>1872-7565</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kc2OFCEUhYnROD2jL-DCsHRTPfxUAWXcdEYdTTrRha4JBbdaOlVQAtVmnsWXlU6PLt1AuHznXLgHoVeUbCmh4va4tfMybBlhbS0oLsgTtKFKskZ2onuKNhXqGyaIvELXOR8JIazrxHN0xXsquFTdBv3e4fIrNrmYA2AIGeZhAjyBScGHAx5MBoeXBM7b4mPAJjh8SMadL-foYMJjTPjr-4be1mVPsQ8__OBLTE2CyZSqtiY5byw27gQp1y4nCCW_xTs8r1Pxtp4g4QQlxbxAbXMCnMvqHl6gZ6OZMrx83G_Q948fvt19avZf7j_f7faNZVyWZmSkNwNno-KUgKCKAGW8bXve91xQkEoRSwEkCMuYlaoVqgpGokjfWjryG_Tm4ruk-HOFXPTss4VpMgHimjUnfUdlR7q2ouyC2vrYnGDUS_KzSQ-aEn0ORR_1ORR9DkVfQqmi14_-6zCD-yf5m0IF3l0AqL88eUg6Ww_B1qmnOhDtov-f_x-eU55Y</recordid><startdate>202410</startdate><enddate>202410</enddate><creator>Cheng, Xitong</creator><creator>Wu, Zhaochun</creator><creator>Lin, Jierong</creator><creator>Wang, Bitao</creator><creator>Huang, Shunming</creator><creator>Liu, Maobai</creator><creator>Yang, Jing</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0009-0002-2228-5521</orcidid><orcidid>https://orcid.org/0009-0005-9938-882X</orcidid><orcidid>https://orcid.org/0000-0002-1454-0791</orcidid></search><sort><creationdate>202410</creationdate><title>A two-stage ensemble learning based prediction and grading model for PD-1/PD-L1 inhibitor-related cardiac adverse events: A multicenter retrospective study</title><author>Cheng, Xitong ; Wu, Zhaochun ; Lin, Jierong ; Wang, Bitao ; Huang, Shunming ; Liu, Maobai ; Yang, Jing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c237t-f209ab32f8310e6180e123449399361e7880c1ee7e6c22c784689abf08094c1f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Aged</topic><topic>Algorithms</topic><topic>B7-H1 Antigen - antagonists & inhibitors</topic><topic>Cardiac adverse events</topic><topic>Female</topic><topic>Grading prediction</topic><topic>Humans</topic><topic>Immune Checkpoint Inhibitors - adverse effects</topic><topic>Immunotherapy</topic><topic>Machine Learning</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Natriuretic Peptide, Brain - blood</topic><topic>PD-1/PD-L1 inhibitors</topic><topic>Peptide Fragments</topic><topic>Programmed Cell Death 1 Receptor - antagonists & inhibitors</topic><topic>Retrospective Studies</topic><topic>ROC Curve</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cheng, Xitong</creatorcontrib><creatorcontrib>Wu, Zhaochun</creatorcontrib><creatorcontrib>Lin, Jierong</creatorcontrib><creatorcontrib>Wang, Bitao</creatorcontrib><creatorcontrib>Huang, Shunming</creatorcontrib><creatorcontrib>Liu, Maobai</creatorcontrib><creatorcontrib>Yang, Jing</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Computer methods and programs in biomedicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cheng, Xitong</au><au>Wu, Zhaochun</au><au>Lin, Jierong</au><au>Wang, Bitao</au><au>Huang, Shunming</au><au>Liu, Maobai</au><au>Yang, Jing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A two-stage ensemble learning based prediction and grading model for PD-1/PD-L1 inhibitor-related cardiac adverse events: A multicenter retrospective study</atitle><jtitle>Computer methods and programs in biomedicine</jtitle><addtitle>Comput Methods Programs Biomed</addtitle><date>2024-10</date><risdate>2024</risdate><volume>255</volume><spage>108360</spage><pages>108360-</pages><artnum>108360</artnum><issn>0169-2607</issn><issn>1872-7565</issn><eissn>1872-7565</eissn><abstract>•The performance of existing prediction models for immune-related cardiac adverse reactions is relatively low, and there is no graded prediction model for these reactions.•This study presents a novel two-stage ensemble machine-learning strategy for predicting and grading immune-related cardiac adverse reactions. The proposed method demonstrates good performance.•The two-stage ensemble learning model for predicting and grading immune-related cardiac adverse reactions holds potential clinical application value in preventing and treating patients.
Immune-related cardiac adverse events (ircAEs) caused by programmed cell death protein-1 (PD-1) and programmed death-ligand-1 (PD-L1) inhibitors can lead to fulminant and even fatal consequences. This study aims to develop a prediction and grading model for ircAEs, enabling graded management of patients.
This study utilized medical record systems from two medical institutions to develop a prediction and grading model for ircAEs using ten machine learning algorithms and two variable screening methods. The model was developed based on a two-stage ensemble learning framework. In the first stage, the ircAEs and non-ircAEs cases were classified. In the second stage, ircAEs cases were grouped into grades 1–2 and 3–5. The experiments were evaluated using five-fold cross-validation. The model's prediction performance was assessed using accuracy, precision, recall, F1 value, Brier score, receiver operating characteristic curve area (AUC), and area under the precision-recall curve (AUPR).
615 patients were included in the study. 147 experienced ircAEs, and 44 experienced grade 3–5 ircAEs. The soft voting classifier trained using the variables screened by feature importance ranking performed better than other classifiers in both stages. The average AUC for the first and second stages is 84.18 % and 85.13 %, respectively. In the first stage, the three most important variables are N-terminal B-type natriuretic peptide (NT-proBNP), interleukin-2 (IL-2), and C-reactive protein (CRP). In the second stage, the patient's age, NT-proBNP, and left ventricular ejection fraction (LVEF) are the three most critical variables.
The prediction and grading model of ircAEs based on two-stage ensemble learning established in this study has good performance and potential clinical application.</abstract><cop>Ireland</cop><pub>Elsevier B.V</pub><pmid>39163785</pmid><doi>10.1016/j.cmpb.2024.108360</doi><orcidid>https://orcid.org/0009-0002-2228-5521</orcidid><orcidid>https://orcid.org/0009-0005-9938-882X</orcidid><orcidid>https://orcid.org/0000-0002-1454-0791</orcidid></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0169-2607 |
ispartof | Computer methods and programs in biomedicine, 2024-10, Vol.255, p.108360, Article 108360 |
issn | 0169-2607 1872-7565 1872-7565 |
language | eng |
recordid | cdi_proquest_miscellaneous_3095175054 |
source | MEDLINE; Access via ScienceDirect (Elsevier) |
subjects | Aged Algorithms B7-H1 Antigen - antagonists & inhibitors Cardiac adverse events Female Grading prediction Humans Immune Checkpoint Inhibitors - adverse effects Immunotherapy Machine Learning Male Middle Aged Natriuretic Peptide, Brain - blood PD-1/PD-L1 inhibitors Peptide Fragments Programmed Cell Death 1 Receptor - antagonists & inhibitors Retrospective Studies ROC Curve |
title | A two-stage ensemble learning based prediction and grading model for PD-1/PD-L1 inhibitor-related cardiac adverse events: A multicenter retrospective study |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-16T23%3A57%3A47IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=A%20two-stage%20ensemble%20learning%20based%20prediction%20and%20grading%20model%20for%20PD-1/PD-L1%20inhibitor-related%20cardiac%20adverse%20events:%20A%20multicenter%20retrospective%20study&rft.jtitle=Computer%20methods%20and%20programs%20in%20biomedicine&rft.au=Cheng,%20Xitong&rft.date=2024-10&rft.volume=255&rft.spage=108360&rft.pages=108360-&rft.artnum=108360&rft.issn=0169-2607&rft.eissn=1872-7565&rft_id=info:doi/10.1016/j.cmpb.2024.108360&rft_dat=%3Cproquest_cross%3E3095175054%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=3095175054&rft_id=info:pmid/39163785&rft_els_id=S0169260724003535&rfr_iscdi=true |