Conformational Dynamics and Molecular Characterization of Alsin MORN Monomer and Dimeric Assemblies
ABSTRACT Despite the ubiquity of membrane occupation recognition nexus (MORN) motifs across diverse species in both eukaryotic and prokaryotic organisms, these protein domains remain poorly characterized. Their significance is underscored in the context of the Alsin protein, implicated in the debili...
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Veröffentlicht in: | Proteins, structure, function, and bioinformatics structure, function, and bioinformatics, 2024-11, Vol.92 (11), p.1343-1353 |
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creator | Miceli, Marcello Cannariato, Marco Tortarolo, Riccardo Pallante, Lorenzo Zizzi, Eric A. Deriu, Marco A. |
description | ABSTRACT
Despite the ubiquity of membrane occupation recognition nexus (MORN) motifs across diverse species in both eukaryotic and prokaryotic organisms, these protein domains remain poorly characterized. Their significance is underscored in the context of the Alsin protein, implicated in the debilitating condition known as infantile‐onset ascending hereditary spastic paralysis (IAHSP). Recent investigations have proposed that mutations within the Alsin MORN domain disrupt proper protein assembly, precluding the formation of the requisite tetrameric configuration essential for the protein's inherent biological activity. However, a comprehensive understanding of the relationship between the biological functions of Alsin and its three‐dimensional molecular structure is hindered by the lack of available experimental structures. In this study, we employed and compared several protein structure prediction algorithms to identify a three‐dimensional structure for the putative MORN of Alsin. Furthermore, inspired by experimental pieces of evidence from previous studies, we employed the developed models to predict and investigate two homo‐dimeric assemblies, characterizing their stability. This study's insights into the three‐dimensional structure of the Alsin MORN domain and the stability dynamics of its homo‐dimeric assemblies suggest an antiparallel linear configuration stabilized by a noncovalent interaction network. |
doi_str_mv | 10.1002/prot.26728 |
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Despite the ubiquity of membrane occupation recognition nexus (MORN) motifs across diverse species in both eukaryotic and prokaryotic organisms, these protein domains remain poorly characterized. Their significance is underscored in the context of the Alsin protein, implicated in the debilitating condition known as infantile‐onset ascending hereditary spastic paralysis (IAHSP). Recent investigations have proposed that mutations within the Alsin MORN domain disrupt proper protein assembly, precluding the formation of the requisite tetrameric configuration essential for the protein's inherent biological activity. However, a comprehensive understanding of the relationship between the biological functions of Alsin and its three‐dimensional molecular structure is hindered by the lack of available experimental structures. In this study, we employed and compared several protein structure prediction algorithms to identify a three‐dimensional structure for the putative MORN of Alsin. Furthermore, inspired by experimental pieces of evidence from previous studies, we employed the developed models to predict and investigate two homo‐dimeric assemblies, characterizing their stability. This study's insights into the three‐dimensional structure of the Alsin MORN domain and the stability dynamics of its homo‐dimeric assemblies suggest an antiparallel linear configuration stabilized by a noncovalent interaction network.</description><identifier>ISSN: 0887-3585</identifier><identifier>ISSN: 1097-0134</identifier><identifier>EISSN: 1097-0134</identifier><identifier>DOI: 10.1002/prot.26728</identifier><identifier>PMID: 39023312</identifier><language>eng</language><publisher>Hoboken, USA: John Wiley & Sons, Inc</publisher><subject>Algorithms ; ALS ; Alsin ; Assemblies ; Biological activity ; Configurations ; Dimers ; Dynamic structural analysis ; IAHSP ; molecular dynamics ; Molecular structure ; MORN ; Paralysis ; Protein structure ; Proteins ; rare disease ; Species diversity ; Stability</subject><ispartof>Proteins, structure, function, and bioinformatics, 2024-11, Vol.92 (11), p.1343-1353</ispartof><rights>2024 Wiley Periodicals LLC.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c2468-1f5fd988d65ad81a2fa3d76c7bd0fe5fdb57ab2c51450ffacddee36200ec4ff03</cites><orcidid>0000-0002-2763-5407</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fprot.26728$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fprot.26728$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,777,781,1412,27905,27906,45555,45556</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39023312$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Miceli, Marcello</creatorcontrib><creatorcontrib>Cannariato, Marco</creatorcontrib><creatorcontrib>Tortarolo, Riccardo</creatorcontrib><creatorcontrib>Pallante, Lorenzo</creatorcontrib><creatorcontrib>Zizzi, Eric A.</creatorcontrib><creatorcontrib>Deriu, Marco A.</creatorcontrib><title>Conformational Dynamics and Molecular Characterization of Alsin MORN Monomer and Dimeric Assemblies</title><title>Proteins, structure, function, and bioinformatics</title><addtitle>Proteins</addtitle><description>ABSTRACT
Despite the ubiquity of membrane occupation recognition nexus (MORN) motifs across diverse species in both eukaryotic and prokaryotic organisms, these protein domains remain poorly characterized. Their significance is underscored in the context of the Alsin protein, implicated in the debilitating condition known as infantile‐onset ascending hereditary spastic paralysis (IAHSP). Recent investigations have proposed that mutations within the Alsin MORN domain disrupt proper protein assembly, precluding the formation of the requisite tetrameric configuration essential for the protein's inherent biological activity. However, a comprehensive understanding of the relationship between the biological functions of Alsin and its three‐dimensional molecular structure is hindered by the lack of available experimental structures. In this study, we employed and compared several protein structure prediction algorithms to identify a three‐dimensional structure for the putative MORN of Alsin. Furthermore, inspired by experimental pieces of evidence from previous studies, we employed the developed models to predict and investigate two homo‐dimeric assemblies, characterizing their stability. This study's insights into the three‐dimensional structure of the Alsin MORN domain and the stability dynamics of its homo‐dimeric assemblies suggest an antiparallel linear configuration stabilized by a noncovalent interaction network.</description><subject>Algorithms</subject><subject>ALS</subject><subject>Alsin</subject><subject>Assemblies</subject><subject>Biological activity</subject><subject>Configurations</subject><subject>Dimers</subject><subject>Dynamic structural analysis</subject><subject>IAHSP</subject><subject>molecular dynamics</subject><subject>Molecular structure</subject><subject>MORN</subject><subject>Paralysis</subject><subject>Protein structure</subject><subject>Proteins</subject><subject>rare disease</subject><subject>Species diversity</subject><subject>Stability</subject><issn>0887-3585</issn><issn>1097-0134</issn><issn>1097-0134</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNp90E1LBCEcx3GJoraHSy8gBrpEMPVXx9E9LtsjVBtR58HxgQxnLN0htlef7VaHDp0U_Pg7fBHax3CCAcjpawzzE1JzItbQCMOYl4BptY5GIAQvKRNsC22n9AIA9ZjWm2iLjoFQiskIqWnobYidnLvQS1-cLXrZOZUK2eviNnijBi9jMX2WUaq5ie5jKYtgi4lPri9uZw93GfahM3H56czlm1PFJCXTtd6ZtIs2rPTJ7H2fO-jp4vxxelXezC6vp5ObUpGqFiW2zOqxELpmUgssiZVU81rxVoM1-a1lXLZEMVwxsFYqrY2hNQEwqrIW6A46Wu3mIG-DSfOmc0kZ72VvwpAaCoJQDJyKTA__0JcwxBwgK4wZZ7yqWFbHK6ViSCka27xG18m4aDA0X-mbr_TNMn3GB9-TQ9sZ_Ut_WmeAV-DdebP4Z6q5f5g9rkY_AWsej-c</recordid><startdate>202411</startdate><enddate>202411</enddate><creator>Miceli, Marcello</creator><creator>Cannariato, Marco</creator><creator>Tortarolo, Riccardo</creator><creator>Pallante, Lorenzo</creator><creator>Zizzi, Eric A.</creator><creator>Deriu, Marco A.</creator><general>John Wiley & Sons, Inc</general><general>Wiley Subscription Services, Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7QP</scope><scope>7QR</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-2763-5407</orcidid></search><sort><creationdate>202411</creationdate><title>Conformational Dynamics and Molecular Characterization of Alsin MORN Monomer and Dimeric Assemblies</title><author>Miceli, Marcello ; Cannariato, Marco ; Tortarolo, Riccardo ; Pallante, Lorenzo ; Zizzi, Eric A. ; Deriu, Marco A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2468-1f5fd988d65ad81a2fa3d76c7bd0fe5fdb57ab2c51450ffacddee36200ec4ff03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Algorithms</topic><topic>ALS</topic><topic>Alsin</topic><topic>Assemblies</topic><topic>Biological activity</topic><topic>Configurations</topic><topic>Dimers</topic><topic>Dynamic structural analysis</topic><topic>IAHSP</topic><topic>molecular dynamics</topic><topic>Molecular structure</topic><topic>MORN</topic><topic>Paralysis</topic><topic>Protein structure</topic><topic>Proteins</topic><topic>rare disease</topic><topic>Species diversity</topic><topic>Stability</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Miceli, Marcello</creatorcontrib><creatorcontrib>Cannariato, Marco</creatorcontrib><creatorcontrib>Tortarolo, Riccardo</creatorcontrib><creatorcontrib>Pallante, Lorenzo</creatorcontrib><creatorcontrib>Zizzi, Eric A.</creatorcontrib><creatorcontrib>Deriu, Marco A.</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Proteins, structure, function, and bioinformatics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Miceli, Marcello</au><au>Cannariato, Marco</au><au>Tortarolo, Riccardo</au><au>Pallante, Lorenzo</au><au>Zizzi, Eric A.</au><au>Deriu, Marco A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Conformational Dynamics and Molecular Characterization of Alsin MORN Monomer and Dimeric Assemblies</atitle><jtitle>Proteins, structure, function, and bioinformatics</jtitle><addtitle>Proteins</addtitle><date>2024-11</date><risdate>2024</risdate><volume>92</volume><issue>11</issue><spage>1343</spage><epage>1353</epage><pages>1343-1353</pages><issn>0887-3585</issn><issn>1097-0134</issn><eissn>1097-0134</eissn><abstract>ABSTRACT
Despite the ubiquity of membrane occupation recognition nexus (MORN) motifs across diverse species in both eukaryotic and prokaryotic organisms, these protein domains remain poorly characterized. Their significance is underscored in the context of the Alsin protein, implicated in the debilitating condition known as infantile‐onset ascending hereditary spastic paralysis (IAHSP). Recent investigations have proposed that mutations within the Alsin MORN domain disrupt proper protein assembly, precluding the formation of the requisite tetrameric configuration essential for the protein's inherent biological activity. However, a comprehensive understanding of the relationship between the biological functions of Alsin and its three‐dimensional molecular structure is hindered by the lack of available experimental structures. In this study, we employed and compared several protein structure prediction algorithms to identify a three‐dimensional structure for the putative MORN of Alsin. Furthermore, inspired by experimental pieces of evidence from previous studies, we employed the developed models to predict and investigate two homo‐dimeric assemblies, characterizing their stability. This study's insights into the three‐dimensional structure of the Alsin MORN domain and the stability dynamics of its homo‐dimeric assemblies suggest an antiparallel linear configuration stabilized by a noncovalent interaction network.</abstract><cop>Hoboken, USA</cop><pub>John Wiley & Sons, Inc</pub><pmid>39023312</pmid><doi>10.1002/prot.26728</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-2763-5407</orcidid></addata></record> |
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subjects | Algorithms ALS Alsin Assemblies Biological activity Configurations Dimers Dynamic structural analysis IAHSP molecular dynamics Molecular structure MORN Paralysis Protein structure Proteins rare disease Species diversity Stability |
title | Conformational Dynamics and Molecular Characterization of Alsin MORN Monomer and Dimeric Assemblies |
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