CAS3D: 3D quantitative morphometry on Second Harmonic Generation image volumes from single skeletal muscle fibers

The CAS3D image processing method intuitively applies a combination of Fourier space and real space 3D analysis algorithms to volumetric images of single skeletal muscle fiber Myosin II Second Harmonic Generation (SHG) XYZ image data. Our developed tool automatically quantifies the myofibrillar orie...

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Veröffentlicht in:	Computers in biology and medicine 2024-08, Vol.178, p.108618, Article 108618
Hauptverfasser:	Schneidereit, Dominik, Bauer, Julian, Mnuskina, Sofia, Nübler, Stefanie, Cacciani, Nicola, Mühlberg, Alexander, Kreiss, Lucas, Ritter, Paul, Schürmann, Sebastian, Larsson, Lars, Friedrich, Oliver
Format:	Artikel
Sprache:	eng
Schlagworte:	3D image analysis Algorithms Animals Datasets Diaphragm Image contrast Image processing Imaging, Three-Dimensional - methods Linear functions Morphometry Muscle Fibers, Skeletal Muscles Musculoskeletal system Myosin Noise levels Orientation Prednisolone Quantitative morphometry Random noise Rats Second harmonic generation Skeletal muscle Software Software automation Trigonometric functions
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