Known pathogenic gene variants and new candidates detected in sudden unexpected infant death using whole genome sequencing
The purpose of this study is to gain insights into potential genetic factors contributing to the infant's vulnerability to Sudden Unexpected Infant Death (SUID). Whole Genome Sequencing (WGS) was performed on 144 infants that succumbed to SUID, and 573 healthy adults. Variants were filtered by...
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Veröffentlicht in: | American journal of medical genetics. Part A 2024-11, Vol.194 (11), p.e63596-n/a |
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creator | Bard, Angela M. Clark, Lindsay V. Cosgun, Erdal Aldinger, Kimberly A. Timms, Andrew Quina, Lely A. Ferres, Juan M. Lavista Jardine, David Haas, Elisabeth A. Becker, Tatiana M. Pagan, Chelsea M. Santani, Avni Martinez, Diego Barua, Soumitra McNutt, Zakkary Nesbitt, Addie Mitchell, Edwin A. Ramirez, Jan‐Marino |
description | The purpose of this study is to gain insights into potential genetic factors contributing to the infant's vulnerability to Sudden Unexpected Infant Death (SUID). Whole Genome Sequencing (WGS) was performed on 144 infants that succumbed to SUID, and 573 healthy adults. Variants were filtered by gnomAD allele frequencies and predictions of functional consequences. Variants of interest were identified in 88 genes, in 64.6% of our cohort. Seventy‐three of these have been previously associated with SIDS/SUID/SUDP. Forty‐three can be characterized as cardiac genes and are related to cardiomyopathies, arrhythmias, and other conditions. Variants in 22 genes were associated with neurologic functions. Variants were also found in 13 genes reported to be pathogenic for various systemic disorders and in two genes associated with immunological function. Variants in eight genes are implicated in the response to hypoxia and the regulation of reactive oxygen species (ROS) and have not been previously described in SIDS/SUID/SUDP. Seventy‐two infants met the triple risk hypothesis criteria. Our study confirms and further expands the list of genetic variants associated with SUID. The abundance of genes associated with heart disease and the discovery of variants associated with the redox metabolism have important mechanistic implications for the pathophysiology of SUID. |
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Lavista ; Jardine, David ; Haas, Elisabeth A. ; Becker, Tatiana M. ; Pagan, Chelsea M. ; Santani, Avni ; Martinez, Diego ; Barua, Soumitra ; McNutt, Zakkary ; Nesbitt, Addie ; Mitchell, Edwin A. ; Ramirez, Jan‐Marino</creator><creatorcontrib>Bard, Angela M. ; Clark, Lindsay V. ; Cosgun, Erdal ; Aldinger, Kimberly A. ; Timms, Andrew ; Quina, Lely A. ; Ferres, Juan M. Lavista ; Jardine, David ; Haas, Elisabeth A. ; Becker, Tatiana M. ; Pagan, Chelsea M. ; Santani, Avni ; Martinez, Diego ; Barua, Soumitra ; McNutt, Zakkary ; Nesbitt, Addie ; Mitchell, Edwin A. ; Ramirez, Jan‐Marino</creatorcontrib><description>The purpose of this study is to gain insights into potential genetic factors contributing to the infant's vulnerability to Sudden Unexpected Infant Death (SUID). Whole Genome Sequencing (WGS) was performed on 144 infants that succumbed to SUID, and 573 healthy adults. Variants were filtered by gnomAD allele frequencies and predictions of functional consequences. Variants of interest were identified in 88 genes, in 64.6% of our cohort. Seventy‐three of these have been previously associated with SIDS/SUID/SUDP. Forty‐three can be characterized as cardiac genes and are related to cardiomyopathies, arrhythmias, and other conditions. Variants in 22 genes were associated with neurologic functions. Variants were also found in 13 genes reported to be pathogenic for various systemic disorders and in two genes associated with immunological function. Variants in eight genes are implicated in the response to hypoxia and the regulation of reactive oxygen species (ROS) and have not been previously described in SIDS/SUID/SUDP. Seventy‐two infants met the triple risk hypothesis criteria. Our study confirms and further expands the list of genetic variants associated with SUID. The abundance of genes associated with heart disease and the discovery of variants associated with the redox metabolism have important mechanistic implications for the pathophysiology of SUID.</description><identifier>ISSN: 1552-4825</identifier><identifier>ISSN: 1552-4833</identifier><identifier>EISSN: 1552-4833</identifier><identifier>DOI: 10.1002/ajmg.a.63596</identifier><identifier>PMID: 38895864</identifier><language>eng</language><publisher>Hoboken, USA: John Wiley & Sons, Inc</publisher><subject>Arrhythmia ; Babies ; cardiomyopathy ; Gene frequency ; Gene regulation ; Genetic diversity ; Genetic factors ; Genomes ; Heart diseases ; Hypoxia ; Infants ; Reactive oxygen species ; ROS ; SIDS ; Sudden infant death syndrome ; SUDEP ; SUID ; WGS ; Whole genome sequencing</subject><ispartof>American journal of medical genetics. Part A, 2024-11, Vol.194 (11), p.e63596-n/a</ispartof><rights>2024 The Authors. published by Wiley Periodicals LLC.</rights><rights>2024 The Authors. 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Whole Genome Sequencing (WGS) was performed on 144 infants that succumbed to SUID, and 573 healthy adults. Variants were filtered by gnomAD allele frequencies and predictions of functional consequences. Variants of interest were identified in 88 genes, in 64.6% of our cohort. Seventy‐three of these have been previously associated with SIDS/SUID/SUDP. Forty‐three can be characterized as cardiac genes and are related to cardiomyopathies, arrhythmias, and other conditions. Variants in 22 genes were associated with neurologic functions. Variants were also found in 13 genes reported to be pathogenic for various systemic disorders and in two genes associated with immunological function. Variants in eight genes are implicated in the response to hypoxia and the regulation of reactive oxygen species (ROS) and have not been previously described in SIDS/SUID/SUDP. Seventy‐two infants met the triple risk hypothesis criteria. 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subjects | Arrhythmia Babies cardiomyopathy Gene frequency Gene regulation Genetic diversity Genetic factors Genomes Heart diseases Hypoxia Infants Reactive oxygen species ROS SIDS Sudden infant death syndrome SUDEP SUID WGS Whole genome sequencing |
title | Known pathogenic gene variants and new candidates detected in sudden unexpected infant death using whole genome sequencing |
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