A predictive radiotranscriptomics model based on DCE-MRI for tumor immune landscape and immunotherapy in cholangiocarcinoma
This study aims to determine the predictive role of dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) derived radiomic model in tumor immune profiling and immunotherapy for cholangiocarcinoma. To perform radiomic analysis, immune related subgroup clustering was first performed by single...
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Veröffentlicht in: | BioScience Trends 2024/06/30, Vol.18(3), pp.263-276 |
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description | This study aims to determine the predictive role of dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) derived radiomic model in tumor immune profiling and immunotherapy for cholangiocarcinoma. To perform radiomic analysis, immune related subgroup clustering was first performed by single sample gene set enrichment analysis (ssGSEA). Second, a total of 806 radiomic features for each phase of DCE-MRI were extracted by utilizing the Python package Pyradiomics. Then, a predictive radiomic signature model was constructed after a three-step features reduction and selection, and receiver operating characteristic (ROC) curve was employed to evaluate the performance of this model. In the end, an independent testing cohort involving cholangiocarcinoma patients with anti-PD-1 Sintilimab treatment after surgery was used to verify the potential application of the established radiomic model in immunotherapy for cholangiocarcinoma. Two distinct immune related subgroups were classified using ssGSEA based on transcriptome sequencing. For radiomic analysis, a total of 10 predictive radiomic features were finally identified to establish a radiomic signature model for immune landscape classification. Regarding to the predictive performance, the mean AUC of ROC curves was 0.80 in the training/validation cohort. For the independent testing cohort, the individual predictive probability by radiomic model and the corresponding immune score derived from ssGSEA was significantly correlated. In conclusion, radiomic signature model based on DCE-MRI was capable of predicting the immune landscape of chalangiocarcinoma. Consequently, a potentially clinical application of this developed radiomic model to guide immunotherapy for cholangiocarcinoma was suggested. |
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To perform radiomic analysis, immune related subgroup clustering was first performed by single sample gene set enrichment analysis (ssGSEA). Second, a total of 806 radiomic features for each phase of DCE-MRI were extracted by utilizing the Python package Pyradiomics. Then, a predictive radiomic signature model was constructed after a three-step features reduction and selection, and receiver operating characteristic (ROC) curve was employed to evaluate the performance of this model. In the end, an independent testing cohort involving cholangiocarcinoma patients with anti-PD-1 Sintilimab treatment after surgery was used to verify the potential application of the established radiomic model in immunotherapy for cholangiocarcinoma. Two distinct immune related subgroups were classified using ssGSEA based on transcriptome sequencing. For radiomic analysis, a total of 10 predictive radiomic features were finally identified to establish a radiomic signature model for immune landscape classification. Regarding to the predictive performance, the mean AUC of ROC curves was 0.80 in the training/validation cohort. For the independent testing cohort, the individual predictive probability by radiomic model and the corresponding immune score derived from ssGSEA was significantly correlated. In conclusion, radiomic signature model based on DCE-MRI was capable of predicting the immune landscape of chalangiocarcinoma. Consequently, a potentially clinical application of this developed radiomic model to guide immunotherapy for cholangiocarcinoma was suggested.</description><identifier>ISSN: 1881-7815</identifier><identifier>ISSN: 1881-7823</identifier><identifier>EISSN: 1881-7823</identifier><identifier>DOI: 10.5582/bst.2024.01121</identifier><identifier>PMID: 38853000</identifier><language>eng</language><publisher>Japan: International Research and Cooperation Association for Bio & Socio-Sciences Advancement</publisher><subject>Chalangiocarcinoma ; DCE-MRI ; Immunotherapy ; Radiotranscriptomics ; Tumor immune landscape</subject><ispartof>BioScience Trends, 2024/06/30, Vol.18(3), pp.263-276</ispartof><rights>2024 International Research and Cooperation Association for Bio & Socio-Sciences Advancement</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c404t-e7c9e2a198a9c1a03bb327f0be0b2e6be510cccbe27fdcd3c139b58f80ab67ef3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,1881,27923,27924</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38853000$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chen, Lu</creatorcontrib><creatorcontrib>Yin, Guotao</creatorcontrib><creatorcontrib>Wang, Ziyang</creatorcontrib><creatorcontrib>Liu, Zifan</creatorcontrib><creatorcontrib>Sui, Chunxiao</creatorcontrib><creatorcontrib>Chen, Kun</creatorcontrib><creatorcontrib>Song, Tianqiang</creatorcontrib><creatorcontrib>Xu, Wengui</creatorcontrib><creatorcontrib>Qi, Lisha</creatorcontrib><creatorcontrib>Li, Xiaofeng</creatorcontrib><title>A predictive radiotranscriptomics model based on DCE-MRI for tumor immune landscape and immunotherapy in cholangiocarcinoma</title><title>BioScience Trends</title><addtitle>BST</addtitle><description>This study aims to determine the predictive role of dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) derived radiomic model in tumor immune profiling and immunotherapy for cholangiocarcinoma. To perform radiomic analysis, immune related subgroup clustering was first performed by single sample gene set enrichment analysis (ssGSEA). Second, a total of 806 radiomic features for each phase of DCE-MRI were extracted by utilizing the Python package Pyradiomics. Then, a predictive radiomic signature model was constructed after a three-step features reduction and selection, and receiver operating characteristic (ROC) curve was employed to evaluate the performance of this model. In the end, an independent testing cohort involving cholangiocarcinoma patients with anti-PD-1 Sintilimab treatment after surgery was used to verify the potential application of the established radiomic model in immunotherapy for cholangiocarcinoma. Two distinct immune related subgroups were classified using ssGSEA based on transcriptome sequencing. For radiomic analysis, a total of 10 predictive radiomic features were finally identified to establish a radiomic signature model for immune landscape classification. Regarding to the predictive performance, the mean AUC of ROC curves was 0.80 in the training/validation cohort. For the independent testing cohort, the individual predictive probability by radiomic model and the corresponding immune score derived from ssGSEA was significantly correlated. In conclusion, radiomic signature model based on DCE-MRI was capable of predicting the immune landscape of chalangiocarcinoma. Consequently, a potentially clinical application of this developed radiomic model to guide immunotherapy for cholangiocarcinoma was suggested.</description><subject>Chalangiocarcinoma</subject><subject>DCE-MRI</subject><subject>Immunotherapy</subject><subject>Radiotranscriptomics</subject><subject>Tumor immune landscape</subject><issn>1881-7815</issn><issn>1881-7823</issn><issn>1881-7823</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNpFkEFr3DAQRkVpaUKaa49Fx168lay1rT2GTdoGUgIhOYvReJxVsCxXkgshf77abLrVYTSM3nyIx9hnKVZNo-tvNuVVLer1SkhZy3fsVGotq07X6v2xl80JO0_pSZTTtFJ37Ud2orRuVBmcspcLPkfqHWb3h3iE3oUcYUoY3ZyDd5i4Dz2N3EKinoeJX26vql9313wIkefFl-q8XybiI0x9QpiJl-YwDHlHEeZn7iaOu1CIRxcQIropePjEPgwwJjp_u8_Yw_er--3P6ub2x_X24qbCtVjnijrcUA1yo2GDEoSyVtXdICwJW1NrqZECES2VYY-9Qqk2ttGDFmDbjgZ1xr4ecucYfi-UsvEuIY3lOxSWZJRoW6XWxWRBVwcUY0gp0mDm6DzEZyOF2Ts3xbnZOzevzsvCl7fsxXrqj_g_wwW4PABPKcMjHQGI2eFIr3lSG7Uv_3OPz7iDaGhSfwHDe5ft</recordid><startdate>20240630</startdate><enddate>20240630</enddate><creator>Chen, Lu</creator><creator>Yin, Guotao</creator><creator>Wang, Ziyang</creator><creator>Liu, Zifan</creator><creator>Sui, Chunxiao</creator><creator>Chen, Kun</creator><creator>Song, Tianqiang</creator><creator>Xu, Wengui</creator><creator>Qi, Lisha</creator><creator>Li, Xiaofeng</creator><general>International Research and Cooperation Association for Bio & Socio-Sciences Advancement</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20240630</creationdate><title>A predictive radiotranscriptomics model based on DCE-MRI for tumor immune landscape and immunotherapy in cholangiocarcinoma</title><author>Chen, Lu ; Yin, Guotao ; Wang, Ziyang ; Liu, Zifan ; Sui, Chunxiao ; Chen, Kun ; Song, Tianqiang ; Xu, Wengui ; Qi, Lisha ; Li, Xiaofeng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c404t-e7c9e2a198a9c1a03bb327f0be0b2e6be510cccbe27fdcd3c139b58f80ab67ef3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Chalangiocarcinoma</topic><topic>DCE-MRI</topic><topic>Immunotherapy</topic><topic>Radiotranscriptomics</topic><topic>Tumor immune landscape</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chen, Lu</creatorcontrib><creatorcontrib>Yin, Guotao</creatorcontrib><creatorcontrib>Wang, Ziyang</creatorcontrib><creatorcontrib>Liu, Zifan</creatorcontrib><creatorcontrib>Sui, Chunxiao</creatorcontrib><creatorcontrib>Chen, Kun</creatorcontrib><creatorcontrib>Song, Tianqiang</creatorcontrib><creatorcontrib>Xu, Wengui</creatorcontrib><creatorcontrib>Qi, Lisha</creatorcontrib><creatorcontrib>Li, Xiaofeng</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>BioScience Trends</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chen, Lu</au><au>Yin, Guotao</au><au>Wang, Ziyang</au><au>Liu, Zifan</au><au>Sui, Chunxiao</au><au>Chen, Kun</au><au>Song, Tianqiang</au><au>Xu, Wengui</au><au>Qi, Lisha</au><au>Li, Xiaofeng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A predictive radiotranscriptomics model based on DCE-MRI for tumor immune landscape and immunotherapy in cholangiocarcinoma</atitle><jtitle>BioScience Trends</jtitle><addtitle>BST</addtitle><date>2024-06-30</date><risdate>2024</risdate><volume>18</volume><issue>3</issue><spage>263</spage><epage>276</epage><pages>263-276</pages><artnum>2024.01121</artnum><issn>1881-7815</issn><issn>1881-7823</issn><eissn>1881-7823</eissn><abstract>This study aims to determine the predictive role of dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) derived radiomic model in tumor immune profiling and immunotherapy for cholangiocarcinoma. To perform radiomic analysis, immune related subgroup clustering was first performed by single sample gene set enrichment analysis (ssGSEA). Second, a total of 806 radiomic features for each phase of DCE-MRI were extracted by utilizing the Python package Pyradiomics. Then, a predictive radiomic signature model was constructed after a three-step features reduction and selection, and receiver operating characteristic (ROC) curve was employed to evaluate the performance of this model. In the end, an independent testing cohort involving cholangiocarcinoma patients with anti-PD-1 Sintilimab treatment after surgery was used to verify the potential application of the established radiomic model in immunotherapy for cholangiocarcinoma. Two distinct immune related subgroups were classified using ssGSEA based on transcriptome sequencing. For radiomic analysis, a total of 10 predictive radiomic features were finally identified to establish a radiomic signature model for immune landscape classification. Regarding to the predictive performance, the mean AUC of ROC curves was 0.80 in the training/validation cohort. For the independent testing cohort, the individual predictive probability by radiomic model and the corresponding immune score derived from ssGSEA was significantly correlated. In conclusion, radiomic signature model based on DCE-MRI was capable of predicting the immune landscape of chalangiocarcinoma. Consequently, a potentially clinical application of this developed radiomic model to guide immunotherapy for cholangiocarcinoma was suggested.</abstract><cop>Japan</cop><pub>International Research and Cooperation Association for Bio & Socio-Sciences Advancement</pub><pmid>38853000</pmid><doi>10.5582/bst.2024.01121</doi><tpages>14</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Chalangiocarcinoma DCE-MRI Immunotherapy Radiotranscriptomics Tumor immune landscape |
title | A predictive radiotranscriptomics model based on DCE-MRI for tumor immune landscape and immunotherapy in cholangiocarcinoma |
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