Phyllostachys edulis argonaute genes function in the shoot architecture
Argonaute (AGO) proteins are the core components of the RNA-induced silencing complexes (RISC) in the cytoplasm and nucleus, and are necessary for the development of plant shoot meristem, which gives rise to the above-ground plant body. In this study, we identified 23 Phyllostachys edulis AGO genes...
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| Veröffentlicht in: | Plant science (Limerick) 2024-08, Vol.345, p.112114-112114, Article 112114 |
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| creator | Yue, Zhiqiang Deng, Chu Zeng, Yuxue Shang, Hongna Wang, Shuo Liu, Shenkui Liu, Hua |
| description | Argonaute (AGO) proteins are the core components of the RNA-induced silencing complexes (RISC) in the cytoplasm and nucleus, and are necessary for the development of plant shoot meristem, which gives rise to the above-ground plant body. In this study, we identified 23 Phyllostachys edulis AGO genes (PhAGOs) that were distributed unequally on the 14 unmapped scaffolds. Gene collinearity and phylogeny analysis showed that the innovation of PhAGO genes was mainly due to dispersed duplication and whole-genome duplication, which resulted in the enlarged PhAGO family. PhAGO genes were expressed in a temporal-spatial expression pattern, and they encoded proteins differently localized in the cytoplasm and/or nucleus. Overexpression of the PhAGO2 and PhAGO4 genes increased the number of tillers or leaves in Oryza sativa and affected the shoot architecture of Arabidopsis thaliana. These results provided insight into the fact that PhAGO genes play important roles in plant development.
•The innovation of PhAGO genes were mainly due to dispersed and whole-genome duplication.•PhAGOs with temporal-spatial expression pattern were distributed unequally on the 14 unmapped scaffolds of moso bamboo.•Ectopic expression of PhAGO2 and PhAGO4 affected the shoot architecture of Oryza sativa and Arabidopsis thaliana. |
| doi_str_mv | 10.1016/j.plantsci.2024.112114 |
| format | Article |
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•The innovation of PhAGO genes were mainly due to dispersed and whole-genome duplication.•PhAGOs with temporal-spatial expression pattern were distributed unequally on the 14 unmapped scaffolds of moso bamboo.•Ectopic expression of PhAGO2 and PhAGO4 affected the shoot architecture of Oryza sativa and Arabidopsis thaliana.</description><identifier>ISSN: 0168-9452</identifier><identifier>EISSN: 1873-2259</identifier><identifier>DOI: 10.1016/j.plantsci.2024.112114</identifier><identifier>PMID: 38735397</identifier><language>eng</language><publisher>Ireland: Elsevier B.V</publisher><subject>Arabidopsis - genetics ; Arabidopsis - growth & development ; Argonaute ; Argonaute Proteins - genetics ; Argonaute Proteins - metabolism ; Gene Expression Regulation, Plant ; Genes, Plant ; Oryza - genetics ; Oryza - growth & development ; Oryza - metabolism ; Phyllostachys edulis ; Phylogeny ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Plant Shoots - genetics ; Plant Shoots - growth & development ; Plant Shoots - metabolism ; Shoot architecture ; Shoot meristems</subject><ispartof>Plant science (Limerick), 2024-08, Vol.345, p.112114-112114, Article 112114</ispartof><rights>2024 Elsevier B.V.</rights><rights>Copyright © 2024 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c315t-3c93147da98dad62f261280ba66977768aad6fabc023fed1e93dc7adcb9cae843</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0168945224001419$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38735397$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yue, Zhiqiang</creatorcontrib><creatorcontrib>Deng, Chu</creatorcontrib><creatorcontrib>Zeng, Yuxue</creatorcontrib><creatorcontrib>Shang, Hongna</creatorcontrib><creatorcontrib>Wang, Shuo</creatorcontrib><creatorcontrib>Liu, Shenkui</creatorcontrib><creatorcontrib>Liu, Hua</creatorcontrib><title>Phyllostachys edulis argonaute genes function in the shoot architecture</title><title>Plant science (Limerick)</title><addtitle>Plant Sci</addtitle><description>Argonaute (AGO) proteins are the core components of the RNA-induced silencing complexes (RISC) in the cytoplasm and nucleus, and are necessary for the development of plant shoot meristem, which gives rise to the above-ground plant body. In this study, we identified 23 Phyllostachys edulis AGO genes (PhAGOs) that were distributed unequally on the 14 unmapped scaffolds. Gene collinearity and phylogeny analysis showed that the innovation of PhAGO genes was mainly due to dispersed duplication and whole-genome duplication, which resulted in the enlarged PhAGO family. PhAGO genes were expressed in a temporal-spatial expression pattern, and they encoded proteins differently localized in the cytoplasm and/or nucleus. Overexpression of the PhAGO2 and PhAGO4 genes increased the number of tillers or leaves in Oryza sativa and affected the shoot architecture of Arabidopsis thaliana. These results provided insight into the fact that PhAGO genes play important roles in plant development.
•The innovation of PhAGO genes were mainly due to dispersed and whole-genome duplication.•PhAGOs with temporal-spatial expression pattern were distributed unequally on the 14 unmapped scaffolds of moso bamboo.•Ectopic expression of PhAGO2 and PhAGO4 affected the shoot architecture of Oryza sativa and Arabidopsis thaliana.</description><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - growth & development</subject><subject>Argonaute</subject><subject>Argonaute Proteins - genetics</subject><subject>Argonaute Proteins - metabolism</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes, Plant</subject><subject>Oryza - genetics</subject><subject>Oryza - growth & development</subject><subject>Oryza - metabolism</subject><subject>Phyllostachys edulis</subject><subject>Phylogeny</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Plant Shoots - genetics</subject><subject>Plant Shoots - growth & development</subject><subject>Plant Shoots - metabolism</subject><subject>Shoot architecture</subject><subject>Shoot meristems</subject><issn>0168-9452</issn><issn>1873-2259</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkE1LAzEQhoMotlb_Qtmjl13ztV83pWgVCnrQc8gms92U7aYmWaH_3pS2Xj0NDM_My_sgNCc4I5gUD5ts18sheGUyiinPCKGE8As0JVXJUkrz-hJNI1ilNc_pBN14v8EY0zwvr9GERShndTlFy49u3_fWB6m6vU9Aj73xiXRrO8gxQLKGAXzSjoMKxg6JGZLQQeI7a0OkVGcCqDA6uEVXrew93J3mDH29PH8uXtPV-_Jt8bRKFSN5SJmqGeGllnWlpS5oSwtCK9zIoqjLsiwqGbetbBSmrAVNoGZalVKrplYSKs5m6P74d-fs9wg-iK3xCvooA-zoBcM554zxWG-GiiOqnPXeQSt2zmyl2wuCxUGi2IizRHGQKI4S4-H8lDE2W9B_Z2drEXg8AhCb_hhwIr6AQYE2LuoQ2pr_Mn4Bd2eIAQ</recordid><startdate>202408</startdate><enddate>202408</enddate><creator>Yue, Zhiqiang</creator><creator>Deng, Chu</creator><creator>Zeng, Yuxue</creator><creator>Shang, Hongna</creator><creator>Wang, Shuo</creator><creator>Liu, Shenkui</creator><creator>Liu, Hua</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>202408</creationdate><title>Phyllostachys edulis argonaute genes function in the shoot architecture</title><author>Yue, Zhiqiang ; Deng, Chu ; Zeng, Yuxue ; Shang, Hongna ; Wang, Shuo ; Liu, Shenkui ; Liu, Hua</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c315t-3c93147da98dad62f261280ba66977768aad6fabc023fed1e93dc7adcb9cae843</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Arabidopsis - genetics</topic><topic>Arabidopsis - growth & development</topic><topic>Argonaute</topic><topic>Argonaute Proteins - genetics</topic><topic>Argonaute Proteins - metabolism</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genes, Plant</topic><topic>Oryza - genetics</topic><topic>Oryza - growth & development</topic><topic>Oryza - metabolism</topic><topic>Phyllostachys edulis</topic><topic>Phylogeny</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Plant Shoots - genetics</topic><topic>Plant Shoots - growth & development</topic><topic>Plant Shoots - metabolism</topic><topic>Shoot architecture</topic><topic>Shoot meristems</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yue, Zhiqiang</creatorcontrib><creatorcontrib>Deng, Chu</creatorcontrib><creatorcontrib>Zeng, Yuxue</creatorcontrib><creatorcontrib>Shang, Hongna</creatorcontrib><creatorcontrib>Wang, Shuo</creatorcontrib><creatorcontrib>Liu, Shenkui</creatorcontrib><creatorcontrib>Liu, Hua</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Plant science (Limerick)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yue, Zhiqiang</au><au>Deng, Chu</au><au>Zeng, Yuxue</au><au>Shang, Hongna</au><au>Wang, Shuo</au><au>Liu, Shenkui</au><au>Liu, Hua</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phyllostachys edulis argonaute genes function in the shoot architecture</atitle><jtitle>Plant science (Limerick)</jtitle><addtitle>Plant Sci</addtitle><date>2024-08</date><risdate>2024</risdate><volume>345</volume><spage>112114</spage><epage>112114</epage><pages>112114-112114</pages><artnum>112114</artnum><issn>0168-9452</issn><eissn>1873-2259</eissn><abstract>Argonaute (AGO) proteins are the core components of the RNA-induced silencing complexes (RISC) in the cytoplasm and nucleus, and are necessary for the development of plant shoot meristem, which gives rise to the above-ground plant body. In this study, we identified 23 Phyllostachys edulis AGO genes (PhAGOs) that were distributed unequally on the 14 unmapped scaffolds. Gene collinearity and phylogeny analysis showed that the innovation of PhAGO genes was mainly due to dispersed duplication and whole-genome duplication, which resulted in the enlarged PhAGO family. PhAGO genes were expressed in a temporal-spatial expression pattern, and they encoded proteins differently localized in the cytoplasm and/or nucleus. Overexpression of the PhAGO2 and PhAGO4 genes increased the number of tillers or leaves in Oryza sativa and affected the shoot architecture of Arabidopsis thaliana. These results provided insight into the fact that PhAGO genes play important roles in plant development.
•The innovation of PhAGO genes were mainly due to dispersed and whole-genome duplication.•PhAGOs with temporal-spatial expression pattern were distributed unequally on the 14 unmapped scaffolds of moso bamboo.•Ectopic expression of PhAGO2 and PhAGO4 affected the shoot architecture of Oryza sativa and Arabidopsis thaliana.</abstract><cop>Ireland</cop><pub>Elsevier B.V</pub><pmid>38735397</pmid><doi>10.1016/j.plantsci.2024.112114</doi><tpages>1</tpages></addata></record> |
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| subjects | Arabidopsis - genetics Arabidopsis - growth & development Argonaute Argonaute Proteins - genetics Argonaute Proteins - metabolism Gene Expression Regulation, Plant Genes, Plant Oryza - genetics Oryza - growth & development Oryza - metabolism Phyllostachys edulis Phylogeny Plant Proteins - genetics Plant Proteins - metabolism Plant Shoots - genetics Plant Shoots - growth & development Plant Shoots - metabolism Shoot architecture Shoot meristems |
| title | Phyllostachys edulis argonaute genes function in the shoot architecture |
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