Genetic variations in immune mediators and prostate cancer risk: A field synopsis with Bayesian calculations
•The rs1143627 and rs1946518 polymorphisms were noteworthy by Bayesian calculations.•There was a high degree of co-expression among IL1B, IL6, IL8 and PTGS2 genes.•The protein–protein network showed that IL-1B was co-expressed with IL-8. Our study aimed to revaluate the significant data from meta-an...
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creator | Santos Freire, Matheus Victor de Oliveira Monteiro, André Moura Martins, Tayane Socorro Silva Lima Duarte, Márcia Carlos Lima, Antonio Luiz Araújo Bentes Leal, Alessandro Rodolfo Pereira da Silva, Felipe Fernando Marques Barcellos, José |
description | •The rs1143627 and rs1946518 polymorphisms were noteworthy by Bayesian calculations.•There was a high degree of co-expression among IL1B, IL6, IL8 and PTGS2 genes.•The protein–protein network showed that IL-1B was co-expressed with IL-8.
Our study aimed to revaluate the significant data from meta-analyses on genetic variations in immune mediators and the risk of prostate cancer (PCa) by Bayesian approaches.
We performed a search on the literature before September 5th, 2023, for meta-analytic studies on polymorphisms in immune mediator genes and the risk of PCa. Two Bayesian approaches were used to assess the level of noteworthiness in the meta-analytic data: the False-Positive Rate Probability (FPRP) and the Bayesian False Discovery Probability (BFDP) with a statistical power of 1.2 and 1.5 of Odds Ratio at a prior probability of 10−3 and 10−6. The quality evaluation of studies was performed with the Venice criteria. Gene-gene and protein–protein networks were designed for the genes and products enrolled in the results.
As results, 18 meta-analyses on 17 polymorphisms in several immune mediator genes were included (IL1B rs16944/rs1143627, IL4 rs2243250/rs2227284/rs2070874, IL6 1800795/rs1800796/rs1800797, IL8 rs4073, IL10 rs1800896/rs1800871/rs1800872, IL18 rs1946518, COX2 rs2745557, TNFA rs361525 and PTGS2 rs20417/689470). The Bayesian calculations showed the rs1143627 and the rs1946518 polymorphisms in IL1B and IL18 genes, respectively, were noteworthy. The Venice criteria showed that only four studies received the highest level of evidence. The gene-gene and protein–protein networks reinforced the findings on IL1B and IL18 genes.
In conclusion, this current Bayesian revaluation showed that the rs1143627 and the rs1946518 polymorphisms in the IL1B and IL18 genes, respectively, were noteworthy biomarker candidates for PCa risk. |
doi_str_mv | 10.1016/j.cyto.2024.156630 |
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Our study aimed to revaluate the significant data from meta-analyses on genetic variations in immune mediators and the risk of prostate cancer (PCa) by Bayesian approaches.
We performed a search on the literature before September 5th, 2023, for meta-analytic studies on polymorphisms in immune mediator genes and the risk of PCa. Two Bayesian approaches were used to assess the level of noteworthiness in the meta-analytic data: the False-Positive Rate Probability (FPRP) and the Bayesian False Discovery Probability (BFDP) with a statistical power of 1.2 and 1.5 of Odds Ratio at a prior probability of 10−3 and 10−6. The quality evaluation of studies was performed with the Venice criteria. Gene-gene and protein–protein networks were designed for the genes and products enrolled in the results.
As results, 18 meta-analyses on 17 polymorphisms in several immune mediator genes were included (IL1B rs16944/rs1143627, IL4 rs2243250/rs2227284/rs2070874, IL6 1800795/rs1800796/rs1800797, IL8 rs4073, IL10 rs1800896/rs1800871/rs1800872, IL18 rs1946518, COX2 rs2745557, TNFA rs361525 and PTGS2 rs20417/689470). The Bayesian calculations showed the rs1143627 and the rs1946518 polymorphisms in IL1B and IL18 genes, respectively, were noteworthy. The Venice criteria showed that only four studies received the highest level of evidence. The gene-gene and protein–protein networks reinforced the findings on IL1B and IL18 genes.
In conclusion, this current Bayesian revaluation showed that the rs1143627 and the rs1946518 polymorphisms in the IL1B and IL18 genes, respectively, were noteworthy biomarker candidates for PCa risk.</description><identifier>ISSN: 1043-4666</identifier><identifier>ISSN: 1096-0023</identifier><identifier>EISSN: 1096-0023</identifier><identifier>DOI: 10.1016/j.cyto.2024.156630</identifier><identifier>PMID: 38696882</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Bayes Theorem ; Bayesian approach ; Cytokine ; Genetic polymorphisms ; Genetic Predisposition to Disease ; Genetic Variation ; Humans ; Interleukin-1beta - genetics ; Interleukins ; Male ; Meta-analysis ; Polymorphism, Single Nucleotide - genetics ; Prostatic neoplasms ; Prostatic Neoplasms - genetics ; Risk Factors</subject><ispartof>Cytokine (Philadelphia, Pa.), 2024-07, Vol.179, p.156630, Article 156630</ispartof><rights>2024 Elsevier Ltd</rights><rights>Copyright © 2024 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c307t-b7fedc4050a6207cc8b1d52f8282a0bc6c6dfc545906bc9dbceaca94456207c63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1043466624001339$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38696882$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Santos Freire, Matheus</creatorcontrib><creatorcontrib>Victor de Oliveira Monteiro, André</creatorcontrib><creatorcontrib>Moura Martins, Tayane</creatorcontrib><creatorcontrib>Socorro Silva Lima Duarte, Márcia</creatorcontrib><creatorcontrib>Carlos Lima, Antonio</creatorcontrib><creatorcontrib>Luiz Araújo Bentes Leal, Alessandro</creatorcontrib><creatorcontrib>Rodolfo Pereira da Silva, Felipe</creatorcontrib><creatorcontrib>Fernando Marques Barcellos, José</creatorcontrib><title>Genetic variations in immune mediators and prostate cancer risk: A field synopsis with Bayesian calculations</title><title>Cytokine (Philadelphia, Pa.)</title><addtitle>Cytokine</addtitle><description>•The rs1143627 and rs1946518 polymorphisms were noteworthy by Bayesian calculations.•There was a high degree of co-expression among IL1B, IL6, IL8 and PTGS2 genes.•The protein–protein network showed that IL-1B was co-expressed with IL-8.
Our study aimed to revaluate the significant data from meta-analyses on genetic variations in immune mediators and the risk of prostate cancer (PCa) by Bayesian approaches.
We performed a search on the literature before September 5th, 2023, for meta-analytic studies on polymorphisms in immune mediator genes and the risk of PCa. Two Bayesian approaches were used to assess the level of noteworthiness in the meta-analytic data: the False-Positive Rate Probability (FPRP) and the Bayesian False Discovery Probability (BFDP) with a statistical power of 1.2 and 1.5 of Odds Ratio at a prior probability of 10−3 and 10−6. The quality evaluation of studies was performed with the Venice criteria. Gene-gene and protein–protein networks were designed for the genes and products enrolled in the results.
As results, 18 meta-analyses on 17 polymorphisms in several immune mediator genes were included (IL1B rs16944/rs1143627, IL4 rs2243250/rs2227284/rs2070874, IL6 1800795/rs1800796/rs1800797, IL8 rs4073, IL10 rs1800896/rs1800871/rs1800872, IL18 rs1946518, COX2 rs2745557, TNFA rs361525 and PTGS2 rs20417/689470). The Bayesian calculations showed the rs1143627 and the rs1946518 polymorphisms in IL1B and IL18 genes, respectively, were noteworthy. The Venice criteria showed that only four studies received the highest level of evidence. The gene-gene and protein–protein networks reinforced the findings on IL1B and IL18 genes.
In conclusion, this current Bayesian revaluation showed that the rs1143627 and the rs1946518 polymorphisms in the IL1B and IL18 genes, respectively, were noteworthy biomarker candidates for PCa risk.</description><subject>Bayes Theorem</subject><subject>Bayesian approach</subject><subject>Cytokine</subject><subject>Genetic polymorphisms</subject><subject>Genetic Predisposition to Disease</subject><subject>Genetic Variation</subject><subject>Humans</subject><subject>Interleukin-1beta - genetics</subject><subject>Interleukins</subject><subject>Male</subject><subject>Meta-analysis</subject><subject>Polymorphism, Single Nucleotide - genetics</subject><subject>Prostatic neoplasms</subject><subject>Prostatic Neoplasms - genetics</subject><subject>Risk Factors</subject><issn>1043-4666</issn><issn>1096-0023</issn><issn>1096-0023</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kMFO3DAQQK2qqFDoD3BAPnLJdmInTlL1QhGlSEi9lLPljCeql8RZbIdq_75eQjn2ZMt68-R5jJ2XsCmhVJ-3G9yneSNAVJuyVkrCO3ZSQqcKACHfH-6VLCql1DH7GOMWADrZNB_YsWxVp9pWnLDxljwlh_zZBGeSm33kznM3TYsnPpHNj3OI3HjLd2GOySTiaDxS4MHFxy_8ig-ORsvj3s-76CL_49Jv_s3sKTrjMzviMq7mM3Y0mDHSp9fzlD18v_l1_aO4_3l7d311X6CEJhV9M5DFCmowSkCD2PalrcXQilYY6FGhsgPWVd2B6rGzPZJB01VV_YIrecouV2_-8dNCMenJRaRxNJ7mJWqZ1Z3sKmgyKlYU83Ix0KB3wU0m7HUJ-lBZb_Whsj5U1mvlPHTx6l_6nOht5F_WDHxdAcpbPjsKOqKjHM26QJi0nd3__H8BcS6QPQ</recordid><startdate>202407</startdate><enddate>202407</enddate><creator>Santos Freire, Matheus</creator><creator>Victor de Oliveira Monteiro, André</creator><creator>Moura Martins, Tayane</creator><creator>Socorro Silva Lima Duarte, Márcia</creator><creator>Carlos Lima, Antonio</creator><creator>Luiz Araújo Bentes Leal, Alessandro</creator><creator>Rodolfo Pereira da Silva, Felipe</creator><creator>Fernando Marques Barcellos, José</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>202407</creationdate><title>Genetic variations in immune mediators and prostate cancer risk: A field synopsis with Bayesian calculations</title><author>Santos Freire, Matheus ; Victor de Oliveira Monteiro, André ; Moura Martins, Tayane ; Socorro Silva Lima Duarte, Márcia ; Carlos Lima, Antonio ; Luiz Araújo Bentes Leal, Alessandro ; Rodolfo Pereira da Silva, Felipe ; Fernando Marques Barcellos, José</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c307t-b7fedc4050a6207cc8b1d52f8282a0bc6c6dfc545906bc9dbceaca94456207c63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Bayes Theorem</topic><topic>Bayesian approach</topic><topic>Cytokine</topic><topic>Genetic polymorphisms</topic><topic>Genetic Predisposition to Disease</topic><topic>Genetic Variation</topic><topic>Humans</topic><topic>Interleukin-1beta - genetics</topic><topic>Interleukins</topic><topic>Male</topic><topic>Meta-analysis</topic><topic>Polymorphism, Single Nucleotide - genetics</topic><topic>Prostatic neoplasms</topic><topic>Prostatic Neoplasms - genetics</topic><topic>Risk Factors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Santos Freire, Matheus</creatorcontrib><creatorcontrib>Victor de Oliveira Monteiro, André</creatorcontrib><creatorcontrib>Moura Martins, Tayane</creatorcontrib><creatorcontrib>Socorro Silva Lima Duarte, Márcia</creatorcontrib><creatorcontrib>Carlos Lima, Antonio</creatorcontrib><creatorcontrib>Luiz Araújo Bentes Leal, Alessandro</creatorcontrib><creatorcontrib>Rodolfo Pereira da Silva, Felipe</creatorcontrib><creatorcontrib>Fernando Marques Barcellos, José</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Cytokine (Philadelphia, Pa.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Santos Freire, Matheus</au><au>Victor de Oliveira Monteiro, André</au><au>Moura Martins, Tayane</au><au>Socorro Silva Lima Duarte, Márcia</au><au>Carlos Lima, Antonio</au><au>Luiz Araújo Bentes Leal, Alessandro</au><au>Rodolfo Pereira da Silva, Felipe</au><au>Fernando Marques Barcellos, José</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic variations in immune mediators and prostate cancer risk: A field synopsis with Bayesian calculations</atitle><jtitle>Cytokine (Philadelphia, Pa.)</jtitle><addtitle>Cytokine</addtitle><date>2024-07</date><risdate>2024</risdate><volume>179</volume><spage>156630</spage><pages>156630-</pages><artnum>156630</artnum><issn>1043-4666</issn><issn>1096-0023</issn><eissn>1096-0023</eissn><abstract>•The rs1143627 and rs1946518 polymorphisms were noteworthy by Bayesian calculations.•There was a high degree of co-expression among IL1B, IL6, IL8 and PTGS2 genes.•The protein–protein network showed that IL-1B was co-expressed with IL-8.
Our study aimed to revaluate the significant data from meta-analyses on genetic variations in immune mediators and the risk of prostate cancer (PCa) by Bayesian approaches.
We performed a search on the literature before September 5th, 2023, for meta-analytic studies on polymorphisms in immune mediator genes and the risk of PCa. Two Bayesian approaches were used to assess the level of noteworthiness in the meta-analytic data: the False-Positive Rate Probability (FPRP) and the Bayesian False Discovery Probability (BFDP) with a statistical power of 1.2 and 1.5 of Odds Ratio at a prior probability of 10−3 and 10−6. The quality evaluation of studies was performed with the Venice criteria. Gene-gene and protein–protein networks were designed for the genes and products enrolled in the results.
As results, 18 meta-analyses on 17 polymorphisms in several immune mediator genes were included (IL1B rs16944/rs1143627, IL4 rs2243250/rs2227284/rs2070874, IL6 1800795/rs1800796/rs1800797, IL8 rs4073, IL10 rs1800896/rs1800871/rs1800872, IL18 rs1946518, COX2 rs2745557, TNFA rs361525 and PTGS2 rs20417/689470). The Bayesian calculations showed the rs1143627 and the rs1946518 polymorphisms in IL1B and IL18 genes, respectively, were noteworthy. The Venice criteria showed that only four studies received the highest level of evidence. The gene-gene and protein–protein networks reinforced the findings on IL1B and IL18 genes.
In conclusion, this current Bayesian revaluation showed that the rs1143627 and the rs1946518 polymorphisms in the IL1B and IL18 genes, respectively, were noteworthy biomarker candidates for PCa risk.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>38696882</pmid><doi>10.1016/j.cyto.2024.156630</doi></addata></record> |
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subjects | Bayes Theorem Bayesian approach Cytokine Genetic polymorphisms Genetic Predisposition to Disease Genetic Variation Humans Interleukin-1beta - genetics Interleukins Male Meta-analysis Polymorphism, Single Nucleotide - genetics Prostatic neoplasms Prostatic Neoplasms - genetics Risk Factors |
title | Genetic variations in immune mediators and prostate cancer risk: A field synopsis with Bayesian calculations |
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