The proteomic analysis uncovers the cellular responses to the African swine fever virus membrane proteins p54, p17, and pB117L
African swine fever virus (ASFV) infection causes African swine fever (ASF), a highly contagious and fatal disease that poses severe threat to swine production. To gain insights into the host responses to ASFV, we generated recombinant adenovirus Ad5 expressing viral membrane proteins p54, p17, and...
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Veröffentlicht in: | Microbes and infection 2024-07, Vol.26 (5-6), p.105348, Article 105348 |
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description | African swine fever virus (ASFV) infection causes African swine fever (ASF), a highly contagious and fatal disease that poses severe threat to swine production. To gain insights into the host responses to ASFV, we generated recombinant adenovirus Ad5 expressing viral membrane proteins p54, p17, and pB117L individually and infected an alveolar cell line, 3D4/21, with these recombinant viruses. Then, the cell lysates were analyzed using label-free quantification proteomic analysis method. A total of 2158 differentially expressed proteins (DEPs) were identified, of which 817, 466, and 875 proteins were from Ad5-p54-, Ad5-p17-, Ad5-pB117L-infected 3D4/21 cells, respectively. Gene Ontology (GO) classification and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis revealed distinct yet interconnecting patterns of protein interaction networks. Specifically, the Ad5-p54 virus infection enriched the DEPs primarily involved in the metabolic pathways, endocytosis, adherens junction, and SNARE interactions in vesicular transport. The Ad5-p17 virus infection enriched the DEPs in endocytosis, ubiquitin-mediated proteolysis, N-Glycan biosynthesis, and apoptosis, while the Ad5-pB117L virus infection enriched the DEPs in metabolic pathways, endocytosis, oxidative phosphorylation, and focal adhesion. In summary, these results provide a comprehensive proteinomics analysis of the cellular responses to three ASFV membrane proteins, thus facilitating our understanding of ASFV pathogenesis. |
doi_str_mv | 10.1016/j.micinf.2024.105348 |
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To gain insights into the host responses to ASFV, we generated recombinant adenovirus Ad5 expressing viral membrane proteins p54, p17, and pB117L individually and infected an alveolar cell line, 3D4/21, with these recombinant viruses. Then, the cell lysates were analyzed using label-free quantification proteomic analysis method. A total of 2158 differentially expressed proteins (DEPs) were identified, of which 817, 466, and 875 proteins were from Ad5-p54-, Ad5-p17-, Ad5-pB117L-infected 3D4/21 cells, respectively. Gene Ontology (GO) classification and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis revealed distinct yet interconnecting patterns of protein interaction networks. Specifically, the Ad5-p54 virus infection enriched the DEPs primarily involved in the metabolic pathways, endocytosis, adherens junction, and SNARE interactions in vesicular transport. The Ad5-p17 virus infection enriched the DEPs in endocytosis, ubiquitin-mediated proteolysis, N-Glycan biosynthesis, and apoptosis, while the Ad5-pB117L virus infection enriched the DEPs in metabolic pathways, endocytosis, oxidative phosphorylation, and focal adhesion. In summary, these results provide a comprehensive proteinomics analysis of the cellular responses to three ASFV membrane proteins, thus facilitating our understanding of ASFV pathogenesis.</description><identifier>ISSN: 1286-4579</identifier><identifier>ISSN: 1769-714X</identifier><identifier>EISSN: 1769-714X</identifier><identifier>DOI: 10.1016/j.micinf.2024.105348</identifier><identifier>PMID: 38697277</identifier><language>eng</language><publisher>France: Elsevier Masson SAS</publisher><subject>African Swine Fever - metabolism ; African Swine Fever - virology ; African swine fever virus ; African Swine Fever Virus - genetics ; African Swine Fever Virus - metabolism ; African Swine Fever Virus - physiology ; Animals ; Cell Line ; Host-Pathogen Interactions ; Membrane protein ; Membrane Proteins - genetics ; Membrane Proteins - metabolism ; p17 ; p54 ; pB117L ; Protein Interaction Maps ; Proteomics ; Proteomics - methods ; Swine ; Viral Matrix Proteins - genetics ; Viral Matrix Proteins - metabolism</subject><ispartof>Microbes and infection, 2024-07, Vol.26 (5-6), p.105348, Article 105348</ispartof><rights>2024 The Author(s)</rights><rights>Copyright © 2024 The Author(s). Published by Elsevier Masson SAS.. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c357t-4d99019bdfeb1c1cfff346b9351356521d88d9d68271d795c6bd1da6982393ed3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1286457924000789$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65534</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38697277$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chen, Yuhong</creatorcontrib><creatorcontrib>Ni, Jianqiang</creatorcontrib><creatorcontrib>Wang, Chuanbin</creatorcontrib><creatorcontrib>Zhai, Xinyan</creatorcontrib><creatorcontrib>Luo, Tingrong</creatorcontrib><creatorcontrib>Li, Yi-Ping</creatorcontrib><creatorcontrib>Wei, Youchuan</creatorcontrib><creatorcontrib>Liu, Yuliang</creatorcontrib><title>The proteomic analysis uncovers the cellular responses to the African swine fever virus membrane proteins p54, p17, and pB117L</title><title>Microbes and infection</title><addtitle>Microbes Infect</addtitle><description>African swine fever virus (ASFV) infection causes African swine fever (ASF), a highly contagious and fatal disease that poses severe threat to swine production. To gain insights into the host responses to ASFV, we generated recombinant adenovirus Ad5 expressing viral membrane proteins p54, p17, and pB117L individually and infected an alveolar cell line, 3D4/21, with these recombinant viruses. Then, the cell lysates were analyzed using label-free quantification proteomic analysis method. A total of 2158 differentially expressed proteins (DEPs) were identified, of which 817, 466, and 875 proteins were from Ad5-p54-, Ad5-p17-, Ad5-pB117L-infected 3D4/21 cells, respectively. Gene Ontology (GO) classification and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis revealed distinct yet interconnecting patterns of protein interaction networks. Specifically, the Ad5-p54 virus infection enriched the DEPs primarily involved in the metabolic pathways, endocytosis, adherens junction, and SNARE interactions in vesicular transport. The Ad5-p17 virus infection enriched the DEPs in endocytosis, ubiquitin-mediated proteolysis, N-Glycan biosynthesis, and apoptosis, while the Ad5-pB117L virus infection enriched the DEPs in metabolic pathways, endocytosis, oxidative phosphorylation, and focal adhesion. In summary, these results provide a comprehensive proteinomics analysis of the cellular responses to three ASFV membrane proteins, thus facilitating our understanding of ASFV pathogenesis.</description><subject>African Swine Fever - metabolism</subject><subject>African Swine Fever - virology</subject><subject>African swine fever virus</subject><subject>African Swine Fever Virus - genetics</subject><subject>African Swine Fever Virus - metabolism</subject><subject>African Swine Fever Virus - physiology</subject><subject>Animals</subject><subject>Cell Line</subject><subject>Host-Pathogen Interactions</subject><subject>Membrane protein</subject><subject>Membrane Proteins - genetics</subject><subject>Membrane Proteins - metabolism</subject><subject>p17</subject><subject>p54</subject><subject>pB117L</subject><subject>Protein Interaction Maps</subject><subject>Proteomics</subject><subject>Proteomics - methods</subject><subject>Swine</subject><subject>Viral Matrix Proteins - genetics</subject><subject>Viral Matrix Proteins - metabolism</subject><issn>1286-4579</issn><issn>1769-714X</issn><issn>1769-714X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9UEuLFDEQDqK4D_0HIjl62B5TnVfnIqyLq8KAlxW8he6kghn6ZdI9shd_uxl79OipiqrvUfUR8grYDhiot4fdEF0cw65mtSgjyUXzhFyCVqbSIL49LX3dqEpIbS7IVc4HxkBqJZ6TC94oo2utL8mvh-9I5zQtOBU52o5t_5hjpuvopiOmTJeyd9j3a98mmjDP05ixjKc_m9uQomtHmn_GEWnAQqHHmNZMBxy61I5n8ThmOktxQ2fQN8XF0_k9gN6_IM9C22d8ea7X5Ov9h4e7T9X-y8fPd7f7ynGpl0p4YxiYzgfswIELIXChOsMlcKlkDb5pvPGqqTV4baRTnQffKtPU3HD0_Jq82XTLNT9WzIsdYj69VS6c1mw5k8xwA8oUqNigLk05Jwx2TnFo06MFZk_J24Pdkren5O2WfKG9Pjus3YD-H-lv1AXwbgNg-fMYMdnsIo4OfUzoFuun-H-H39yAlrk</recordid><startdate>202407</startdate><enddate>202407</enddate><creator>Chen, Yuhong</creator><creator>Ni, Jianqiang</creator><creator>Wang, Chuanbin</creator><creator>Zhai, Xinyan</creator><creator>Luo, Tingrong</creator><creator>Li, Yi-Ping</creator><creator>Wei, Youchuan</creator><creator>Liu, Yuliang</creator><general>Elsevier Masson SAS</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>202407</creationdate><title>The proteomic analysis uncovers the cellular responses to the African swine fever virus membrane proteins p54, p17, and pB117L</title><author>Chen, Yuhong ; Ni, Jianqiang ; Wang, Chuanbin ; Zhai, Xinyan ; Luo, Tingrong ; Li, Yi-Ping ; Wei, Youchuan ; Liu, Yuliang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c357t-4d99019bdfeb1c1cfff346b9351356521d88d9d68271d795c6bd1da6982393ed3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>African Swine Fever - metabolism</topic><topic>African Swine Fever - virology</topic><topic>African swine fever virus</topic><topic>African Swine Fever Virus - genetics</topic><topic>African Swine Fever Virus - metabolism</topic><topic>African Swine Fever Virus - physiology</topic><topic>Animals</topic><topic>Cell Line</topic><topic>Host-Pathogen Interactions</topic><topic>Membrane protein</topic><topic>Membrane Proteins - genetics</topic><topic>Membrane Proteins - metabolism</topic><topic>p17</topic><topic>p54</topic><topic>pB117L</topic><topic>Protein Interaction Maps</topic><topic>Proteomics</topic><topic>Proteomics - methods</topic><topic>Swine</topic><topic>Viral Matrix Proteins - genetics</topic><topic>Viral Matrix Proteins - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chen, Yuhong</creatorcontrib><creatorcontrib>Ni, Jianqiang</creatorcontrib><creatorcontrib>Wang, Chuanbin</creatorcontrib><creatorcontrib>Zhai, Xinyan</creatorcontrib><creatorcontrib>Luo, Tingrong</creatorcontrib><creatorcontrib>Li, Yi-Ping</creatorcontrib><creatorcontrib>Wei, Youchuan</creatorcontrib><creatorcontrib>Liu, Yuliang</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Microbes and infection</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chen, Yuhong</au><au>Ni, Jianqiang</au><au>Wang, Chuanbin</au><au>Zhai, Xinyan</au><au>Luo, Tingrong</au><au>Li, Yi-Ping</au><au>Wei, Youchuan</au><au>Liu, Yuliang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The proteomic analysis uncovers the cellular responses to the African swine fever virus membrane proteins p54, p17, and pB117L</atitle><jtitle>Microbes and infection</jtitle><addtitle>Microbes Infect</addtitle><date>2024-07</date><risdate>2024</risdate><volume>26</volume><issue>5-6</issue><spage>105348</spage><pages>105348-</pages><artnum>105348</artnum><issn>1286-4579</issn><issn>1769-714X</issn><eissn>1769-714X</eissn><abstract>African swine fever virus (ASFV) infection causes African swine fever (ASF), a highly contagious and fatal disease that poses severe threat to swine production. To gain insights into the host responses to ASFV, we generated recombinant adenovirus Ad5 expressing viral membrane proteins p54, p17, and pB117L individually and infected an alveolar cell line, 3D4/21, with these recombinant viruses. Then, the cell lysates were analyzed using label-free quantification proteomic analysis method. A total of 2158 differentially expressed proteins (DEPs) were identified, of which 817, 466, and 875 proteins were from Ad5-p54-, Ad5-p17-, Ad5-pB117L-infected 3D4/21 cells, respectively. Gene Ontology (GO) classification and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis revealed distinct yet interconnecting patterns of protein interaction networks. Specifically, the Ad5-p54 virus infection enriched the DEPs primarily involved in the metabolic pathways, endocytosis, adherens junction, and SNARE interactions in vesicular transport. The Ad5-p17 virus infection enriched the DEPs in endocytosis, ubiquitin-mediated proteolysis, N-Glycan biosynthesis, and apoptosis, while the Ad5-pB117L virus infection enriched the DEPs in metabolic pathways, endocytosis, oxidative phosphorylation, and focal adhesion. In summary, these results provide a comprehensive proteinomics analysis of the cellular responses to three ASFV membrane proteins, thus facilitating our understanding of ASFV pathogenesis.</abstract><cop>France</cop><pub>Elsevier Masson SAS</pub><pmid>38697277</pmid><doi>10.1016/j.micinf.2024.105348</doi><oa>free_for_read</oa></addata></record> |
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subjects | African Swine Fever - metabolism African Swine Fever - virology African swine fever virus African Swine Fever Virus - genetics African Swine Fever Virus - metabolism African Swine Fever Virus - physiology Animals Cell Line Host-Pathogen Interactions Membrane protein Membrane Proteins - genetics Membrane Proteins - metabolism p17 p54 pB117L Protein Interaction Maps Proteomics Proteomics - methods Swine Viral Matrix Proteins - genetics Viral Matrix Proteins - metabolism |
title | The proteomic analysis uncovers the cellular responses to the African swine fever virus membrane proteins p54, p17, and pB117L |
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