Methanooceanicella nereidis gen. nov., sp. nov., the first oceanic Methanocellaceae methanogen, isolated from potential methane hydrate bearing area offshore southwestern Taiwan
A novel mesophilic, hydrogenotrophic methanogen, strain CWC-04 , was obtained from a sediment sample extracted from a gravity core retrieved at station 22 within the KP-9 area off the southwestern coast of Taiwan during the ORIII-1368 cruise in 2009. Cells of strain CWC-04 were rod-shaped, 1.4-2.9 µ...
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creator | Zhang, Wei-Ling Lai, Mei-Chin Lin, Saulwood Chen, Wen-Chieh Deng, Yu-Chen Lai, Shu-Jung Wu, Sue-Yao Hung, Chuan-Chuan Ding, Jiun-Yan Chen, Sheng-Chung |
description | A novel mesophilic, hydrogenotrophic methanogen, strain CWC-04
, was obtained from a sediment sample extracted from a gravity core retrieved at station 22 within the KP-9 area off the southwestern coast of Taiwan during the ORIII-1368 cruise in 2009. Cells of strain CWC-04
were rod-shaped, 1.4-2.9 µm long by 0.5-0.6 µm wide, and occurred singly. Strain CWC-04
utilized formate, H
/CO
, 2-propanol/CO
or 2-butanol/CO
as catabolic substrates. The optimal growth conditions were 42 °C, 0.17 M NaCl and pH 5.35. The genomic DNA G+C content calculated from the genome sequence of strain CWC-04
was 46.19 mol%. Phylogenetic analysis of 16S rRNA gene revealed that strain CWC-04
is affiliated with the genus
. The 16S rRNA gene sequences similarities within strains
MRE50
,
SANAE
and
HZ254
were 93.7, 93.0 and 91.3 %, respectively. In addition, the optical density of CWC-04
culture dropped abruptly upon entering the late-log growth phase, with virus-like particles (150 nm in diameter) being observed on and around the cells. This observation suggests that strain CWC-04
harbours a lytic virus. Based on these phenotypic, phylogenetic and genomic results, we propose that strain CWC-04
represents a novel species of a novel genus in the family
, for which the name
gen. nov., sp. nov. is proposed. The type strain is CWC-04
(=BCRC AR10050
=NBRC 113165
). |
doi_str_mv | 10.1099/ijsem.0.006322 |
format | Article |
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, was obtained from a sediment sample extracted from a gravity core retrieved at station 22 within the KP-9 area off the southwestern coast of Taiwan during the ORIII-1368 cruise in 2009. Cells of strain CWC-04
were rod-shaped, 1.4-2.9 µm long by 0.5-0.6 µm wide, and occurred singly. Strain CWC-04
utilized formate, H
/CO
, 2-propanol/CO
or 2-butanol/CO
as catabolic substrates. The optimal growth conditions were 42 °C, 0.17 M NaCl and pH 5.35. The genomic DNA G+C content calculated from the genome sequence of strain CWC-04
was 46.19 mol%. Phylogenetic analysis of 16S rRNA gene revealed that strain CWC-04
is affiliated with the genus
. The 16S rRNA gene sequences similarities within strains
MRE50
,
SANAE
and
HZ254
were 93.7, 93.0 and 91.3 %, respectively. In addition, the optical density of CWC-04
culture dropped abruptly upon entering the late-log growth phase, with virus-like particles (150 nm in diameter) being observed on and around the cells. This observation suggests that strain CWC-04
harbours a lytic virus. Based on these phenotypic, phylogenetic and genomic results, we propose that strain CWC-04
represents a novel species of a novel genus in the family
, for which the name
gen. nov., sp. nov. is proposed. The type strain is CWC-04
(=BCRC AR10050
=NBRC 113165
).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.006322</identifier><identifier>PMID: 38634834</identifier><language>eng</language><publisher>England</publisher><ispartof>International journal of systematic and evolutionary microbiology, 2024-04, Vol.74 (4)</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c250t-7ba047a0ea097e73f55ab57e9e9063f4d73076a4880c1199808032431335e67a3</cites><orcidid>0000-0002-5670-1338</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38634834$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Wei-Ling</creatorcontrib><creatorcontrib>Lai, Mei-Chin</creatorcontrib><creatorcontrib>Lin, Saulwood</creatorcontrib><creatorcontrib>Chen, Wen-Chieh</creatorcontrib><creatorcontrib>Deng, Yu-Chen</creatorcontrib><creatorcontrib>Lai, Shu-Jung</creatorcontrib><creatorcontrib>Wu, Sue-Yao</creatorcontrib><creatorcontrib>Hung, Chuan-Chuan</creatorcontrib><creatorcontrib>Ding, Jiun-Yan</creatorcontrib><creatorcontrib>Chen, Sheng-Chung</creatorcontrib><title>Methanooceanicella nereidis gen. nov., sp. nov., the first oceanic Methanocellaceae methanogen, isolated from potential methane hydrate bearing area offshore southwestern Taiwan</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A novel mesophilic, hydrogenotrophic methanogen, strain CWC-04
, was obtained from a sediment sample extracted from a gravity core retrieved at station 22 within the KP-9 area off the southwestern coast of Taiwan during the ORIII-1368 cruise in 2009. Cells of strain CWC-04
were rod-shaped, 1.4-2.9 µm long by 0.5-0.6 µm wide, and occurred singly. Strain CWC-04
utilized formate, H
/CO
, 2-propanol/CO
or 2-butanol/CO
as catabolic substrates. The optimal growth conditions were 42 °C, 0.17 M NaCl and pH 5.35. The genomic DNA G+C content calculated from the genome sequence of strain CWC-04
was 46.19 mol%. Phylogenetic analysis of 16S rRNA gene revealed that strain CWC-04
is affiliated with the genus
. The 16S rRNA gene sequences similarities within strains
MRE50
,
SANAE
and
HZ254
were 93.7, 93.0 and 91.3 %, respectively. In addition, the optical density of CWC-04
culture dropped abruptly upon entering the late-log growth phase, with virus-like particles (150 nm in diameter) being observed on and around the cells. This observation suggests that strain CWC-04
harbours a lytic virus. Based on these phenotypic, phylogenetic and genomic results, we propose that strain CWC-04
represents a novel species of a novel genus in the family
, for which the name
gen. nov., sp. nov. is proposed. The type strain is CWC-04
(=BCRC AR10050
=NBRC 113165
).</description><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNo9kTtv3DAQhIkgRvxKmzLYMoVPWYrUqzQMvwAHaexa2JNWFg2JvJA8G_5Z-Yem72RXXAy_GSw5QvyQmElsmt_mKfCcYYZYqjz_Io6kLstVgUp__Zzz8lAch_CEmATEb-JQ1aXStdJH4v8fjiNZ5zomazqeJgLLnk1vAjyyzcC65-wMwuZjiiPDYHyIsHhgidiZk8Qw74VkPwMT3ESRexi8m2HjIttoaFoYhvG19-ke1kze2EcgzwRuGMLoPENw2zi-cIjsLdyTeSF7Kg4GmgJ_X84T8XB1eX9xs7r7e317cX636vIC46paE-qKkAmbiis1FAWti4obbtJXDbqvFFYl6brGTsqmqbFGlWsllSq4rEidiF_73I13_7ZphXY2YfdGy24bWoVa5gmXZUKzPdp5F4Lnod14M5N_bSW27zW1u5pabPc1JcPPJXu7nrn_xD96UW99TpFq</recordid><startdate>202404</startdate><enddate>202404</enddate><creator>Zhang, Wei-Ling</creator><creator>Lai, Mei-Chin</creator><creator>Lin, Saulwood</creator><creator>Chen, Wen-Chieh</creator><creator>Deng, Yu-Chen</creator><creator>Lai, Shu-Jung</creator><creator>Wu, Sue-Yao</creator><creator>Hung, Chuan-Chuan</creator><creator>Ding, Jiun-Yan</creator><creator>Chen, Sheng-Chung</creator><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-5670-1338</orcidid></search><sort><creationdate>202404</creationdate><title>Methanooceanicella nereidis gen. nov., sp. nov., the first oceanic Methanocellaceae methanogen, isolated from potential methane hydrate bearing area offshore southwestern Taiwan</title><author>Zhang, Wei-Ling ; Lai, Mei-Chin ; Lin, Saulwood ; Chen, Wen-Chieh ; Deng, Yu-Chen ; Lai, Shu-Jung ; Wu, Sue-Yao ; Hung, Chuan-Chuan ; Ding, Jiun-Yan ; Chen, Sheng-Chung</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c250t-7ba047a0ea097e73f55ab57e9e9063f4d73076a4880c1199808032431335e67a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Wei-Ling</creatorcontrib><creatorcontrib>Lai, Mei-Chin</creatorcontrib><creatorcontrib>Lin, Saulwood</creatorcontrib><creatorcontrib>Chen, Wen-Chieh</creatorcontrib><creatorcontrib>Deng, Yu-Chen</creatorcontrib><creatorcontrib>Lai, Shu-Jung</creatorcontrib><creatorcontrib>Wu, Sue-Yao</creatorcontrib><creatorcontrib>Hung, Chuan-Chuan</creatorcontrib><creatorcontrib>Ding, Jiun-Yan</creatorcontrib><creatorcontrib>Chen, Sheng-Chung</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Wei-Ling</au><au>Lai, Mei-Chin</au><au>Lin, Saulwood</au><au>Chen, Wen-Chieh</au><au>Deng, Yu-Chen</au><au>Lai, Shu-Jung</au><au>Wu, Sue-Yao</au><au>Hung, Chuan-Chuan</au><au>Ding, Jiun-Yan</au><au>Chen, Sheng-Chung</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Methanooceanicella nereidis gen. nov., sp. nov., the first oceanic Methanocellaceae methanogen, isolated from potential methane hydrate bearing area offshore southwestern Taiwan</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2024-04</date><risdate>2024</risdate><volume>74</volume><issue>4</issue><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A novel mesophilic, hydrogenotrophic methanogen, strain CWC-04
, was obtained from a sediment sample extracted from a gravity core retrieved at station 22 within the KP-9 area off the southwestern coast of Taiwan during the ORIII-1368 cruise in 2009. Cells of strain CWC-04
were rod-shaped, 1.4-2.9 µm long by 0.5-0.6 µm wide, and occurred singly. Strain CWC-04
utilized formate, H
/CO
, 2-propanol/CO
or 2-butanol/CO
as catabolic substrates. The optimal growth conditions were 42 °C, 0.17 M NaCl and pH 5.35. The genomic DNA G+C content calculated from the genome sequence of strain CWC-04
was 46.19 mol%. Phylogenetic analysis of 16S rRNA gene revealed that strain CWC-04
is affiliated with the genus
. The 16S rRNA gene sequences similarities within strains
MRE50
,
SANAE
and
HZ254
were 93.7, 93.0 and 91.3 %, respectively. In addition, the optical density of CWC-04
culture dropped abruptly upon entering the late-log growth phase, with virus-like particles (150 nm in diameter) being observed on and around the cells. This observation suggests that strain CWC-04
harbours a lytic virus. Based on these phenotypic, phylogenetic and genomic results, we propose that strain CWC-04
represents a novel species of a novel genus in the family
, for which the name
gen. nov., sp. nov. is proposed. The type strain is CWC-04
(=BCRC AR10050
=NBRC 113165
).</abstract><cop>England</cop><pmid>38634834</pmid><doi>10.1099/ijsem.0.006322</doi><orcidid>https://orcid.org/0000-0002-5670-1338</orcidid></addata></record> |
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title | Methanooceanicella nereidis gen. nov., sp. nov., the first oceanic Methanocellaceae methanogen, isolated from potential methane hydrate bearing area offshore southwestern Taiwan |
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