Protein oxidation of fucose environments (POFE) reveals fucose-protein interactions

Cell membrane glycoproteins are generally highly fucosylated and sialylated, and post-translational modifications play important roles in the proteins' functions of signaling, binding and cellular processing. For these reasons, methods for measuring sialic acid-mediated protein-protein interact...

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Veröffentlicht in:Chemical science (Cambridge) 2024-04, Vol.15 (14), p.5256-5267
Hauptverfasser: Xie, Yixuan, Chen, Siyu, Alvarez, Michael Russelle, Sheng, Ying, Li, Qiongyu, Maverakis, Emanual, Lebrilla, Carlito B
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container_issue 14
container_start_page 5256
container_title Chemical science (Cambridge)
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creator Xie, Yixuan
Chen, Siyu
Alvarez, Michael Russelle
Sheng, Ying
Li, Qiongyu
Maverakis, Emanual
Lebrilla, Carlito B
description Cell membrane glycoproteins are generally highly fucosylated and sialylated, and post-translational modifications play important roles in the proteins' functions of signaling, binding and cellular processing. For these reasons, methods for measuring sialic acid-mediated protein-protein interactions have been developed. However, determining the role of fucose in these interactions has been limited by technological barriers that have thus far hindered the ability to characterize and observe fucose-mediated protein-protein interactions. Herein, we describe a method to metabolically label mammalian cells with modified fucose, which incorporates a bioorthogonal group into cell membrane glycoproteins thereby enabling the characterization of cell-surface fucose interactome. Copper-catalyzed click chemistry was used to conjugate a proximity labeling probe, azido-FeBABE. Following the addition of hydrogen peroxide (H 2 O 2 ), the fucose-azido-FeBABE catalyzed the formation of hydroxyl radicals, which in turn oxidized the amino acids in the proximity of the labeled fucose residue. The oxidized peptides were identified using liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS). Variations in degree of protein oxidation were obtained with different H 2 O 2 reaction times yielding the acquisition of spatial information of the fucose-interacting proteins. In addition, specific glycoprotein-protein interactions were constructed for Galectin-3 (LEG3) and Galectin-3-binding protein (LG3BP) illustrating the further utility of the method. This method identifies new fucose binding partners thereby enhancing our understanding of the cell glycocalyx. POFE (Protein Oxidation of Fucose Environments) method utilizes proximity-based oxidative proteomics to decipher cellular fucosylated glycoprotein interactions.
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subjects Amino acids
Cell membranes
Chemical synthesis
Chemistry
Fucose
Glycoproteins
Hydrogen peroxide
Hydroxyl radicals
Labels
Liquid chromatography
Mass spectrometry
Measurement methods
Oxidation
Peptides
Proteins
Spatial data
title Protein oxidation of fucose environments (POFE) reveals fucose-protein interactions
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