Isolation, identification and transcriptome analysis of triadimefon-degrading strain Enterobacter hormaechei TY18
Triadimefon, a type of triazole systemic fungicide, has been extensively used to control various fungal diseases. However, triadimefon could lead to severe environmental pollution, and even threatens human health. To eliminate triadimefon residues, a triadimefon-degrading bacterial strain TY18 was i...
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| Veröffentlicht in: | Biodegradation (Dordrecht) 2024-08, Vol.35 (5), p.551-564 |
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| creator | Wang, Yan Guan, Qi Jiao, Wenhui Li, Jiangbo Zhao, Rui Zhang, Xiqian Fan, Weixin Wang, Chunwei |
| description | Triadimefon, a type of triazole systemic fungicide, has been extensively used to control various fungal diseases. However, triadimefon could lead to severe environmental pollution, and even threatens human health. To eliminate triadimefon residues, a triadimefon-degrading bacterial strain TY18 was isolated from a long-term polluted site and was identified as
Enterobacter hormaechei
. Strain TY18 could grow well in a carbon salt medium with triadimefon as the sole nitrogen source, and could efficiently degrade triadimefon. Under triadimefon stress, a total of 430 differentially expressed genes (DEGs), including 197 up-regulated and 233 down-regulated DEGs, were identified in strain TY18 using transcriptome sequencing (RNA-Seq). Functional classification and enrichment analysis revealed that these DEGs were mainly related to amino acid transport and metabolism, carbohydrate transport and metabolism, small molecule and pyrimidine metabolism. Interestingly, the DEGs encoding monooxygenase and hydrolase activity acting on carbon–nitrogen were highly up-regulated, might be mainly responsible for the metabolism in triadimefon. Our findings in this work suggest that strain
E. hormaechei
TY18 could efficiently degrade triadimefon for the first time. They provide a great potential to manage triadimefon biodegradation in the environment successfully. |
| doi_str_mv | 10.1007/s10532-024-10076-3 |
| format | Article |
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Enterobacter hormaechei
. Strain TY18 could grow well in a carbon salt medium with triadimefon as the sole nitrogen source, and could efficiently degrade triadimefon. Under triadimefon stress, a total of 430 differentially expressed genes (DEGs), including 197 up-regulated and 233 down-regulated DEGs, were identified in strain TY18 using transcriptome sequencing (RNA-Seq). Functional classification and enrichment analysis revealed that these DEGs were mainly related to amino acid transport and metabolism, carbohydrate transport and metabolism, small molecule and pyrimidine metabolism. Interestingly, the DEGs encoding monooxygenase and hydrolase activity acting on carbon–nitrogen were highly up-regulated, might be mainly responsible for the metabolism in triadimefon. Our findings in this work suggest that strain
E. hormaechei
TY18 could efficiently degrade triadimefon for the first time. They provide a great potential to manage triadimefon biodegradation in the environment successfully.</description><identifier>ISSN: 0923-9820</identifier><identifier>ISSN: 1572-9729</identifier><identifier>EISSN: 1572-9729</identifier><identifier>DOI: 10.1007/s10532-024-10076-3</identifier><identifier>PMID: 38530488</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Amino acids ; Aquatic Pollution ; Biodegradation ; Biomedical and Life Sciences ; Carbohydrate metabolism ; Carbohydrates ; Carbon ; Enterobacter hormaechei ; Environmental health ; Fungal diseases ; fungi ; Fungicides ; gene expression regulation ; Gene sequencing ; Geochemistry ; human health ; hydrolases ; Life Sciences ; Metabolism ; Microbiological strains ; Microbiology ; Nitrogen ; Original Paper ; pollution ; Pyrimidines ; RNA transport ; sequence analysis ; Soil Science & Conservation ; Strain analysis ; Terrestrial Pollution ; transcriptome ; Transcriptomes ; transcriptomics ; Triadimefon ; triazoles ; Waste Management/Waste Technology ; Waste Water Technology ; Water Management ; Water Pollution Control</subject><ispartof>Biodegradation (Dordrecht), 2024-08, Vol.35 (5), p.551-564</ispartof><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2024. The Author(s), under exclusive licence to Springer Nature B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c359t-8b5f6284029be9272d70e0ce3a618df3baa1558f9c8f1fc7c3e6c27508e57d313</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10532-024-10076-3$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10532-024-10076-3$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38530488$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Yan</creatorcontrib><creatorcontrib>Guan, Qi</creatorcontrib><creatorcontrib>Jiao, Wenhui</creatorcontrib><creatorcontrib>Li, Jiangbo</creatorcontrib><creatorcontrib>Zhao, Rui</creatorcontrib><creatorcontrib>Zhang, Xiqian</creatorcontrib><creatorcontrib>Fan, Weixin</creatorcontrib><creatorcontrib>Wang, Chunwei</creatorcontrib><title>Isolation, identification and transcriptome analysis of triadimefon-degrading strain Enterobacter hormaechei TY18</title><title>Biodegradation (Dordrecht)</title><addtitle>Biodegradation</addtitle><addtitle>Biodegradation</addtitle><description>Triadimefon, a type of triazole systemic fungicide, has been extensively used to control various fungal diseases. However, triadimefon could lead to severe environmental pollution, and even threatens human health. To eliminate triadimefon residues, a triadimefon-degrading bacterial strain TY18 was isolated from a long-term polluted site and was identified as
Enterobacter hormaechei
. Strain TY18 could grow well in a carbon salt medium with triadimefon as the sole nitrogen source, and could efficiently degrade triadimefon. Under triadimefon stress, a total of 430 differentially expressed genes (DEGs), including 197 up-regulated and 233 down-regulated DEGs, were identified in strain TY18 using transcriptome sequencing (RNA-Seq). Functional classification and enrichment analysis revealed that these DEGs were mainly related to amino acid transport and metabolism, carbohydrate transport and metabolism, small molecule and pyrimidine metabolism. Interestingly, the DEGs encoding monooxygenase and hydrolase activity acting on carbon–nitrogen were highly up-regulated, might be mainly responsible for the metabolism in triadimefon. Our findings in this work suggest that strain
E. hormaechei
TY18 could efficiently degrade triadimefon for the first time. They provide a great potential to manage triadimefon biodegradation in the environment successfully.</description><subject>Amino acids</subject><subject>Aquatic Pollution</subject><subject>Biodegradation</subject><subject>Biomedical and Life Sciences</subject><subject>Carbohydrate metabolism</subject><subject>Carbohydrates</subject><subject>Carbon</subject><subject>Enterobacter hormaechei</subject><subject>Environmental health</subject><subject>Fungal diseases</subject><subject>fungi</subject><subject>Fungicides</subject><subject>gene expression regulation</subject><subject>Gene sequencing</subject><subject>Geochemistry</subject><subject>human health</subject><subject>hydrolases</subject><subject>Life Sciences</subject><subject>Metabolism</subject><subject>Microbiological strains</subject><subject>Microbiology</subject><subject>Nitrogen</subject><subject>Original Paper</subject><subject>pollution</subject><subject>Pyrimidines</subject><subject>RNA transport</subject><subject>sequence analysis</subject><subject>Soil Science & Conservation</subject><subject>Strain analysis</subject><subject>Terrestrial Pollution</subject><subject>transcriptome</subject><subject>Transcriptomes</subject><subject>transcriptomics</subject><subject>Triadimefon</subject><subject>triazoles</subject><subject>Waste Management/Waste Technology</subject><subject>Waste Water Technology</subject><subject>Water Management</subject><subject>Water Pollution Control</subject><issn>0923-9820</issn><issn>1572-9729</issn><issn>1572-9729</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNqFkTFPHDEQhS1EFC6EP0ARrUSTIoaxfV7bZYSAICHRkIJq5fWOD6Nd-7D3Cv59fHeESCmSavQ833sj-RFyyuCcAaiLwkAKToEv6Va3VByQBZOKU6O4OSQLMFxQozkckU-lPAOAUcA_kiOhpYCl1gvyclvSaOeQ4rcmDBjn4IPb6cbGoZmzjcXlsJ7ThPXFjq8llCb5ugl2CBP6FOmAq1xFXDWlGkJsruKMOfXW1dE8pTxZdE8YmodHpj-TD96OBU_e5jH5eX31cPmD3t3f3F5-v6NOSDNT3Uvfcr0Ebno0XPFBAYJDYVumBy96a5mU2hunPfNOOYGt40qCRqkGwcQx-brPXef0ssEyd1MoDsfRRkyb0gkmhQKlWvl_FEAshVFGVfTsL_Q5bXL9ly2ljGHAd4F8T7mcSsnou3UOk82vHYNu21W3766r3e1024lq-vIWveknHN4tv8uqgNgDpa7iCvOf2_-I_QWviqT0</recordid><startdate>20240801</startdate><enddate>20240801</enddate><creator>Wang, Yan</creator><creator>Guan, Qi</creator><creator>Jiao, Wenhui</creator><creator>Li, Jiangbo</creator><creator>Zhao, Rui</creator><creator>Zhang, Xiqian</creator><creator>Fan, Weixin</creator><creator>Wang, Chunwei</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7ST</scope><scope>7T7</scope><scope>7UA</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H97</scope><scope>K9.</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>SOI</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope></search><sort><creationdate>20240801</creationdate><title>Isolation, identification and transcriptome analysis of triadimefon-degrading strain Enterobacter hormaechei TY18</title><author>Wang, Yan ; 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However, triadimefon could lead to severe environmental pollution, and even threatens human health. To eliminate triadimefon residues, a triadimefon-degrading bacterial strain TY18 was isolated from a long-term polluted site and was identified as
Enterobacter hormaechei
. Strain TY18 could grow well in a carbon salt medium with triadimefon as the sole nitrogen source, and could efficiently degrade triadimefon. Under triadimefon stress, a total of 430 differentially expressed genes (DEGs), including 197 up-regulated and 233 down-regulated DEGs, were identified in strain TY18 using transcriptome sequencing (RNA-Seq). Functional classification and enrichment analysis revealed that these DEGs were mainly related to amino acid transport and metabolism, carbohydrate transport and metabolism, small molecule and pyrimidine metabolism. Interestingly, the DEGs encoding monooxygenase and hydrolase activity acting on carbon–nitrogen were highly up-regulated, might be mainly responsible for the metabolism in triadimefon. Our findings in this work suggest that strain
E. hormaechei
TY18 could efficiently degrade triadimefon for the first time. They provide a great potential to manage triadimefon biodegradation in the environment successfully.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>38530488</pmid><doi>10.1007/s10532-024-10076-3</doi><tpages>14</tpages></addata></record> |
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| subjects | Amino acids Aquatic Pollution Biodegradation Biomedical and Life Sciences Carbohydrate metabolism Carbohydrates Carbon Enterobacter hormaechei Environmental health Fungal diseases fungi Fungicides gene expression regulation Gene sequencing Geochemistry human health hydrolases Life Sciences Metabolism Microbiological strains Microbiology Nitrogen Original Paper pollution Pyrimidines RNA transport sequence analysis Soil Science & Conservation Strain analysis Terrestrial Pollution transcriptome Transcriptomes transcriptomics Triadimefon triazoles Waste Management/Waste Technology Waste Water Technology Water Management Water Pollution Control |
| title | Isolation, identification and transcriptome analysis of triadimefon-degrading strain Enterobacter hormaechei TY18 |
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