GInaFiT, a freeware tool to assess non-log-linear microbial survivor curves
This contribution focuses on the presentation of GInaFiT (Geeraerd and Van Impe Inactivation Model Fitting Tool), a freeware Add-inn for Microsoft® Excel aiming at bridging the gap between people developing predictive modelling approaches and end-users in the food industry not familiar with or not d...
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Veröffentlicht in: | International journal of food microbiology 2005-06, Vol.102 (1), p.95-105 |
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creator | Geeraerd, A.H. Valdramidis, V.P. Van Impe, J.F. |
description | This contribution focuses on the presentation of GInaFiT (Geeraerd and Van Impe Inactivation Model Fitting Tool), a freeware Add-inn for Microsoft® Excel aiming at bridging the gap between people developing predictive modelling approaches and end-users in the food industry not familiar with or not disposing over advanced non-linear regression analysis tools. More precisely, the tool is useful for testing nine different types of microbial survival models on user-specific experimental data relating the evolution of the microbial population with time. As such, the authors believe to cover all known survivor curve shapes for vegetative bacterial cells. The nine model types are: (i) classical log-linear curves, (ii) curves displaying a so-called shoulder before a log-linear decrease is apparent, (iii) curves displaying a so-called tail after a log-linear decrease, (iv) survival curves displaying both shoulder and tailing behaviour, (v) concave curves, (vi) convex curves, (vii) convex/concave curves followed by tailing, (viii) biphasic inactivation kinetics, and (ix) biphasic inactivation kinetics preceded by a shoulder. Next to the obtained parameter values, the following statistical measures are automatically reported: standard errors of the parameter values, the Sum of Squared Errors, the Mean Sum of Squared Errors and its Root, the
R
2 and the adjusted
R
2. The tool can help the end-user to communicate the performance of food preservation processes in terms of the number of log cycles of reduction rather than the classical
D-value and is downloadable via the KULeuven/BioTeC-homepage
http://cit.kuleuven.be/biotec/ at the topic “Downloads” (Version 1.4, Release date April 2005). |
doi_str_mv | 10.1016/j.ijfoodmicro.2004.11.038 |
format | Article |
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R
2 and the adjusted
R
2. The tool can help the end-user to communicate the performance of food preservation processes in terms of the number of log cycles of reduction rather than the classical
D-value and is downloadable via the KULeuven/BioTeC-homepage
http://cit.kuleuven.be/biotec/ at the topic “Downloads” (Version 1.4, Release date April 2005).</description><identifier>ISSN: 0168-1605</identifier><identifier>EISSN: 1879-3460</identifier><identifier>DOI: 10.1016/j.ijfoodmicro.2004.11.038</identifier><identifier>PMID: 15893399</identifier><identifier>CODEN: IJFMDD</identifier><language>eng</language><publisher>Amsterdam: Elsevier B.V</publisher><subject>bacteria ; Bacteria - growth & development ; bacterial contamination ; Biological and medical sciences ; Consumer Product Safety ; Excel add-in ; expert systems ; Food industries ; food industry ; Food Microbiology ; Food Preservation ; Freeware tool ; Fundamental and applied biological sciences. Psychology ; heat tolerance ; heat treatment ; Kinetics ; microbial growth ; Microbial inactivation ; Microbial survival ; Models, Biological ; nonlinear models ; nonthermal processing ; Numerical Analysis, Computer-Assisted ; population dynamics ; Predictive microbiology ; Predictive Value of Tests ; Software ; vegetative cells ; viability</subject><ispartof>International journal of food microbiology, 2005-06, Vol.102 (1), p.95-105</ispartof><rights>2005 Elsevier B.V.</rights><rights>2005 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c644t-8be08eff4d6788b425ec57c79684f535e2fa6886ac8e9a319f77b3067e84bd3e3</citedby><cites>FETCH-LOGICAL-c644t-8be08eff4d6788b425ec57c79684f535e2fa6886ac8e9a319f77b3067e84bd3e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0168160505000073$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3536,27903,27904,65309</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=16864220$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15893399$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Geeraerd, A.H.</creatorcontrib><creatorcontrib>Valdramidis, V.P.</creatorcontrib><creatorcontrib>Van Impe, J.F.</creatorcontrib><title>GInaFiT, a freeware tool to assess non-log-linear microbial survivor curves</title><title>International journal of food microbiology</title><addtitle>Int J Food Microbiol</addtitle><description>This contribution focuses on the presentation of GInaFiT (Geeraerd and Van Impe Inactivation Model Fitting Tool), a freeware Add-inn for Microsoft® Excel aiming at bridging the gap between people developing predictive modelling approaches and end-users in the food industry not familiar with or not disposing over advanced non-linear regression analysis tools. More precisely, the tool is useful for testing nine different types of microbial survival models on user-specific experimental data relating the evolution of the microbial population with time. As such, the authors believe to cover all known survivor curve shapes for vegetative bacterial cells. The nine model types are: (i) classical log-linear curves, (ii) curves displaying a so-called shoulder before a log-linear decrease is apparent, (iii) curves displaying a so-called tail after a log-linear decrease, (iv) survival curves displaying both shoulder and tailing behaviour, (v) concave curves, (vi) convex curves, (vii) convex/concave curves followed by tailing, (viii) biphasic inactivation kinetics, and (ix) biphasic inactivation kinetics preceded by a shoulder. Next to the obtained parameter values, the following statistical measures are automatically reported: standard errors of the parameter values, the Sum of Squared Errors, the Mean Sum of Squared Errors and its Root, the
R
2 and the adjusted
R
2. The tool can help the end-user to communicate the performance of food preservation processes in terms of the number of log cycles of reduction rather than the classical
D-value and is downloadable via the KULeuven/BioTeC-homepage
http://cit.kuleuven.be/biotec/ at the topic “Downloads” (Version 1.4, Release date April 2005).</description><subject>bacteria</subject><subject>Bacteria - growth & development</subject><subject>bacterial contamination</subject><subject>Biological and medical sciences</subject><subject>Consumer Product Safety</subject><subject>Excel add-in</subject><subject>expert systems</subject><subject>Food industries</subject><subject>food industry</subject><subject>Food Microbiology</subject><subject>Food Preservation</subject><subject>Freeware tool</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>heat tolerance</subject><subject>heat treatment</subject><subject>Kinetics</subject><subject>microbial growth</subject><subject>Microbial inactivation</subject><subject>Microbial survival</subject><subject>Models, Biological</subject><subject>nonlinear models</subject><subject>nonthermal processing</subject><subject>Numerical Analysis, Computer-Assisted</subject><subject>population dynamics</subject><subject>Predictive microbiology</subject><subject>Predictive Value of Tests</subject><subject>Software</subject><subject>vegetative cells</subject><subject>viability</subject><issn>0168-1605</issn><issn>1879-3460</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqN0U1vEzEQBmALUdFQ-AuwHMqJXTzr72MV0VJRqQfas-X1jitHm3WxkyD-fR0SqdzoxePDMzOWX0I-Ae2Agvy66uIqpDSuo8-p6ynlHUBHmX5FFqCVaRmX9DVZVKtbkFSckrelrCilgjH6hpyC0IYxYxbkx9X17C7j3ZfGNSEj_nYZm01KUz0aVwqW0sxpbqf00E5xRpebv1uH6KambPMu7lJufL1geUdOgpsKvj_WM3J_-e1u-b29ub26Xl7ctF5yvmn1gFRjCHyUSuuB9wK9UF4ZqXkQTGAfnNRaOq_ROAYmKDUwKhVqPowM2Rn5fJj7mNOvLZaNXcficZrcjGlbbG8UCODwAtgroVX_XwhKCgmaVWgOsH5BKRmDfcxx7fIfC9Tus7Er-082dp-NBbA1m9r74bhkO6xxfO48hlHB-RG44t0Uspt9LM9Oasn7nlb38eCCS9Y95Gruf_YUGAVKtdF7sTwIrDHsImZbfMTZ4xgz-o0dU3zBg58A3H-7mg</recordid><startdate>20050601</startdate><enddate>20050601</enddate><creator>Geeraerd, A.H.</creator><creator>Valdramidis, V.P.</creator><creator>Van Impe, J.F.</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>7TB</scope><scope>F28</scope></search><sort><creationdate>20050601</creationdate><title>GInaFiT, a freeware tool to assess non-log-linear microbial survivor curves</title><author>Geeraerd, A.H. ; Valdramidis, V.P. ; Van Impe, J.F.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c644t-8be08eff4d6788b425ec57c79684f535e2fa6886ac8e9a319f77b3067e84bd3e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>bacteria</topic><topic>Bacteria - growth & development</topic><topic>bacterial contamination</topic><topic>Biological and medical sciences</topic><topic>Consumer Product Safety</topic><topic>Excel add-in</topic><topic>expert systems</topic><topic>Food industries</topic><topic>food industry</topic><topic>Food Microbiology</topic><topic>Food Preservation</topic><topic>Freeware tool</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>heat tolerance</topic><topic>heat treatment</topic><topic>Kinetics</topic><topic>microbial growth</topic><topic>Microbial inactivation</topic><topic>Microbial survival</topic><topic>Models, Biological</topic><topic>nonlinear models</topic><topic>nonthermal processing</topic><topic>Numerical Analysis, Computer-Assisted</topic><topic>population dynamics</topic><topic>Predictive microbiology</topic><topic>Predictive Value of Tests</topic><topic>Software</topic><topic>vegetative cells</topic><topic>viability</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Geeraerd, A.H.</creatorcontrib><creatorcontrib>Valdramidis, V.P.</creatorcontrib><creatorcontrib>Van Impe, J.F.</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><jtitle>International journal of food microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Geeraerd, A.H.</au><au>Valdramidis, V.P.</au><au>Van Impe, J.F.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>GInaFiT, a freeware tool to assess non-log-linear microbial survivor curves</atitle><jtitle>International journal of food microbiology</jtitle><addtitle>Int J Food Microbiol</addtitle><date>2005-06-01</date><risdate>2005</risdate><volume>102</volume><issue>1</issue><spage>95</spage><epage>105</epage><pages>95-105</pages><issn>0168-1605</issn><eissn>1879-3460</eissn><coden>IJFMDD</coden><abstract>This contribution focuses on the presentation of GInaFiT (Geeraerd and Van Impe Inactivation Model Fitting Tool), a freeware Add-inn for Microsoft® Excel aiming at bridging the gap between people developing predictive modelling approaches and end-users in the food industry not familiar with or not disposing over advanced non-linear regression analysis tools. More precisely, the tool is useful for testing nine different types of microbial survival models on user-specific experimental data relating the evolution of the microbial population with time. As such, the authors believe to cover all known survivor curve shapes for vegetative bacterial cells. The nine model types are: (i) classical log-linear curves, (ii) curves displaying a so-called shoulder before a log-linear decrease is apparent, (iii) curves displaying a so-called tail after a log-linear decrease, (iv) survival curves displaying both shoulder and tailing behaviour, (v) concave curves, (vi) convex curves, (vii) convex/concave curves followed by tailing, (viii) biphasic inactivation kinetics, and (ix) biphasic inactivation kinetics preceded by a shoulder. Next to the obtained parameter values, the following statistical measures are automatically reported: standard errors of the parameter values, the Sum of Squared Errors, the Mean Sum of Squared Errors and its Root, the
R
2 and the adjusted
R
2. The tool can help the end-user to communicate the performance of food preservation processes in terms of the number of log cycles of reduction rather than the classical
D-value and is downloadable via the KULeuven/BioTeC-homepage
http://cit.kuleuven.be/biotec/ at the topic “Downloads” (Version 1.4, Release date April 2005).</abstract><cop>Amsterdam</cop><pub>Elsevier B.V</pub><pmid>15893399</pmid><doi>10.1016/j.ijfoodmicro.2004.11.038</doi><tpages>11</tpages></addata></record> |
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subjects | bacteria Bacteria - growth & development bacterial contamination Biological and medical sciences Consumer Product Safety Excel add-in expert systems Food industries food industry Food Microbiology Food Preservation Freeware tool Fundamental and applied biological sciences. Psychology heat tolerance heat treatment Kinetics microbial growth Microbial inactivation Microbial survival Models, Biological nonlinear models nonthermal processing Numerical Analysis, Computer-Assisted population dynamics Predictive microbiology Predictive Value of Tests Software vegetative cells viability |
title | GInaFiT, a freeware tool to assess non-log-linear microbial survivor curves |
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