Lacticaseibacillus pabuli sp. nov., isolated from fermented cattle feed
Strain BSF-3M is a Gram-stain-positive, non-flagellated, facultative anaerobic and rod-shaped bacterium that was isolated from fermented feed collected at a cattle farm in the Daejeon region of the Republic of Korea. It was studied using polyphasic taxonomic methods. Using 16S rRNA gene sequences an...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2024-03, Vol.74 (3) |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Choi, Hyorim Kim, Yiseul Kim, Seunghwan Kwon, Soon-Wo Lee, Daseul Han, Byeong-Hak Hong, Seung-Beom Naito, Hanako Yamada, Tomomi Hamada, Moriyuki Heo, Jun |
| description | Strain BSF-3M
is a Gram-stain-positive, non-flagellated, facultative anaerobic and rod-shaped bacterium that was isolated from fermented feed collected at a cattle farm in the Daejeon region of the Republic of Korea. It was studied using polyphasic taxonomic methods. Using 16S rRNA gene sequences and the resulting phylogenetic tree, the strain was primarily identified as a member of the genus
. Strain BSF-3M
contained a chromosome of 2.5 Mbp and a plasmid of 33.4 kbp. The G+C content of genomic DNA was 51.3 mol%. Strain BSF-3M
had the highest ortho-average nucleotide identity value of 73.7 % with
7-19
, its closest relative in the phylogenetic tree based on the 16S rRNA gene sequences and the phylogenomic tree based on up-to-date bacterial core genes. Based on the results of a polyphasic taxonomic study, strain BSF-3M
represents a novel species in the genus
, for which the name
sp. nov. is proposed. The type strain is BSF-3M
(=KACC 23028
=NBRC 116014
). |
| doi_str_mv | 10.1099/ijsem.0.006277 |
| format | Article |
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is a Gram-stain-positive, non-flagellated, facultative anaerobic and rod-shaped bacterium that was isolated from fermented feed collected at a cattle farm in the Daejeon region of the Republic of Korea. It was studied using polyphasic taxonomic methods. Using 16S rRNA gene sequences and the resulting phylogenetic tree, the strain was primarily identified as a member of the genus
. Strain BSF-3M
contained a chromosome of 2.5 Mbp and a plasmid of 33.4 kbp. The G+C content of genomic DNA was 51.3 mol%. Strain BSF-3M
had the highest ortho-average nucleotide identity value of 73.7 % with
7-19
, its closest relative in the phylogenetic tree based on the 16S rRNA gene sequences and the phylogenomic tree based on up-to-date bacterial core genes. Based on the results of a polyphasic taxonomic study, strain BSF-3M
represents a novel species in the genus
, for which the name
sp. nov. is proposed. The type strain is BSF-3M
(=KACC 23028
=NBRC 116014
).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.006277</identifier><identifier>PMID: 38446021</identifier><language>eng</language><publisher>England</publisher><subject>Animal Feed ; Animals ; Bacterial Typing Techniques ; Base Composition ; Cattle ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Lacticaseibacillus ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA</subject><ispartof>International journal of systematic and evolutionary microbiology, 2024-03, Vol.74 (3)</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c250t-e6a9333d831e4286c7ee75384d5237578eb39e6ba74f99a99e5863c7b2b476983</cites><orcidid>0000-0002-8412-5833</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38446021$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Choi, Hyorim</creatorcontrib><creatorcontrib>Kim, Yiseul</creatorcontrib><creatorcontrib>Kim, Seunghwan</creatorcontrib><creatorcontrib>Kwon, Soon-Wo</creatorcontrib><creatorcontrib>Lee, Daseul</creatorcontrib><creatorcontrib>Han, Byeong-Hak</creatorcontrib><creatorcontrib>Hong, Seung-Beom</creatorcontrib><creatorcontrib>Naito, Hanako</creatorcontrib><creatorcontrib>Yamada, Tomomi</creatorcontrib><creatorcontrib>Hamada, Moriyuki</creatorcontrib><creatorcontrib>Heo, Jun</creatorcontrib><title>Lacticaseibacillus pabuli sp. nov., isolated from fermented cattle feed</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>Strain BSF-3M
is a Gram-stain-positive, non-flagellated, facultative anaerobic and rod-shaped bacterium that was isolated from fermented feed collected at a cattle farm in the Daejeon region of the Republic of Korea. It was studied using polyphasic taxonomic methods. Using 16S rRNA gene sequences and the resulting phylogenetic tree, the strain was primarily identified as a member of the genus
. Strain BSF-3M
contained a chromosome of 2.5 Mbp and a plasmid of 33.4 kbp. The G+C content of genomic DNA was 51.3 mol%. Strain BSF-3M
had the highest ortho-average nucleotide identity value of 73.7 % with
7-19
, its closest relative in the phylogenetic tree based on the 16S rRNA gene sequences and the phylogenomic tree based on up-to-date bacterial core genes. Based on the results of a polyphasic taxonomic study, strain BSF-3M
represents a novel species in the genus
, for which the name
sp. nov. is proposed. The type strain is BSF-3M
(=KACC 23028
=NBRC 116014
).</description><subject>Animal Feed</subject><subject>Animals</subject><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>Cattle</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Lacticaseibacillus</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kL1PwzAQxS0EoqWwMqKMDCRc7MQfI6qgIEVigdmynYvkymlCnCDx35PS0unePb17Ov0Iuc0hy0GpR7-N2GaQAXAqxBlZ5gXnaQmsOD9pyhfkKsYtwGwAXJIFk8WsaL4km8q40TsT0VvjfAhTTHpjp-CT2GfJrvvOHhIfu2BGrJNm6NqkwaHF3X51ZhwDzgbW1-SiMSHizXGuyOfL88f6Na3eN2_rpyp1tIQxRW4UY6yWLMeCSu4Eoijnd-qSMlEKiZYp5NaIolHKKIWl5MwJS20huJJsRe4Pvf3QfU0YR9366DAEs8NuipoqJqkUwPkczQ5RN3QxDtjofvCtGX50DnoPT__B06AP8OaDu2P3ZFusT_F_WuwXIl5qHQ</recordid><startdate>20240301</startdate><enddate>20240301</enddate><creator>Choi, Hyorim</creator><creator>Kim, Yiseul</creator><creator>Kim, Seunghwan</creator><creator>Kwon, Soon-Wo</creator><creator>Lee, Daseul</creator><creator>Han, Byeong-Hak</creator><creator>Hong, Seung-Beom</creator><creator>Naito, Hanako</creator><creator>Yamada, Tomomi</creator><creator>Hamada, Moriyuki</creator><creator>Heo, Jun</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-8412-5833</orcidid></search><sort><creationdate>20240301</creationdate><title>Lacticaseibacillus pabuli sp. nov., isolated from fermented cattle feed</title><author>Choi, Hyorim ; Kim, Yiseul ; Kim, Seunghwan ; Kwon, Soon-Wo ; Lee, Daseul ; Han, Byeong-Hak ; Hong, Seung-Beom ; Naito, Hanako ; Yamada, Tomomi ; Hamada, Moriyuki ; Heo, Jun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c250t-e6a9333d831e4286c7ee75384d5237578eb39e6ba74f99a99e5863c7b2b476983</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Animal Feed</topic><topic>Animals</topic><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>Cattle</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Lacticaseibacillus</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Choi, Hyorim</creatorcontrib><creatorcontrib>Kim, Yiseul</creatorcontrib><creatorcontrib>Kim, Seunghwan</creatorcontrib><creatorcontrib>Kwon, Soon-Wo</creatorcontrib><creatorcontrib>Lee, Daseul</creatorcontrib><creatorcontrib>Han, Byeong-Hak</creatorcontrib><creatorcontrib>Hong, Seung-Beom</creatorcontrib><creatorcontrib>Naito, Hanako</creatorcontrib><creatorcontrib>Yamada, Tomomi</creatorcontrib><creatorcontrib>Hamada, Moriyuki</creatorcontrib><creatorcontrib>Heo, Jun</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Choi, Hyorim</au><au>Kim, Yiseul</au><au>Kim, Seunghwan</au><au>Kwon, Soon-Wo</au><au>Lee, Daseul</au><au>Han, Byeong-Hak</au><au>Hong, Seung-Beom</au><au>Naito, Hanako</au><au>Yamada, Tomomi</au><au>Hamada, Moriyuki</au><au>Heo, Jun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Lacticaseibacillus pabuli sp. nov., isolated from fermented cattle feed</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2024-03-01</date><risdate>2024</risdate><volume>74</volume><issue>3</issue><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>Strain BSF-3M
is a Gram-stain-positive, non-flagellated, facultative anaerobic and rod-shaped bacterium that was isolated from fermented feed collected at a cattle farm in the Daejeon region of the Republic of Korea. It was studied using polyphasic taxonomic methods. Using 16S rRNA gene sequences and the resulting phylogenetic tree, the strain was primarily identified as a member of the genus
. Strain BSF-3M
contained a chromosome of 2.5 Mbp and a plasmid of 33.4 kbp. The G+C content of genomic DNA was 51.3 mol%. Strain BSF-3M
had the highest ortho-average nucleotide identity value of 73.7 % with
7-19
, its closest relative in the phylogenetic tree based on the 16S rRNA gene sequences and the phylogenomic tree based on up-to-date bacterial core genes. Based on the results of a polyphasic taxonomic study, strain BSF-3M
represents a novel species in the genus
, for which the name
sp. nov. is proposed. The type strain is BSF-3M
(=KACC 23028
=NBRC 116014
).</abstract><cop>England</cop><pmid>38446021</pmid><doi>10.1099/ijsem.0.006277</doi><orcidid>https://orcid.org/0000-0002-8412-5833</orcidid></addata></record> |
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| ispartof | International journal of systematic and evolutionary microbiology, 2024-03, Vol.74 (3) |
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| language | eng |
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| source | MEDLINE; Microbiology Society |
| subjects | Animal Feed Animals Bacterial Typing Techniques Base Composition Cattle DNA, Bacterial - genetics Fatty Acids - chemistry Lacticaseibacillus Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA |
| title | Lacticaseibacillus pabuli sp. nov., isolated from fermented cattle feed |
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