Spray-type modifications: an emerging paradigm in post-translational modifications
Recent and intriguing research demonstrates that post-translational modification (PTM) events can act in a local-dependent manner in addition to the traditional sequence-dependent manner.We propose the spray-type PTM concept and describe a mechanism that focuses on the exposure level of reactive ele...
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Veröffentlicht in: | Trends in biochemical sciences (Amsterdam. Regular ed.) 2024-03, Vol.49 (3), p.208-223 |
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description | Recent and intriguing research demonstrates that post-translational modification (PTM) events can act in a local-dependent manner in addition to the traditional sequence-dependent manner.We propose the spray-type PTM concept and describe a mechanism that focuses on the exposure level of reactive electrophilic substrate molecules at the active sites of PTM enzymes.Spray-type PTMs involve chemical interactions between electrophilic groups and nucleophilic moieties that are in close proximity, resembling the principles behind contemporary proximity labeling techniques.We further propose that spray-type PTMs play crucial roles in the simultaneous regulation of proteins within the same location, which are crucial for efficient responses to various stressors such as DNA breaks, heat shock stress, or viral infection.
A post-translational modification (PTM) occurs when a nucleophilic residue (e.g., lysine of a target protein) attacks electrophilic substrate molecules (e.g., acyl-AMP), involving writer enzymes or even occurring spontaneously. Traditionally, this phenomenon was thought to be sequence specific; however, recent research suggests that PTMs can also occur in a non-sequence-specific manner confined to a specific location in a cell. In this Opinion, we compile the accumulated evidence of spray-type PTMs and propose a mechanism for this phenomenon based on the exposure level of reactive electrophilic substrate molecules at the active site of the PTM writers. Overall, a spray-type PTM conceptual framework is useful for comprehending the promiscuous PTM writer events that cannot be adequately explained by the traditional concept of sequence-dependent PTM events.
A post-translational modification (PTM) occurs when a nucleophilic residue (e.g., lysine of a target protein) attacks electrophilic substrate molecules (e.g., acyl-AMP), involving writer enzymes or even occurring spontaneously. Traditionally, this phenomenon was thought to be sequence specific; however, recent research suggests that PTMs can also occur in a non-sequence-specific manner confined to a specific location in a cell. In this Opinion, we compile the accumulated evidence of spray-type PTMs and propose a mechanism for this phenomenon based on the exposure level of reactive electrophilic substrate molecules at the active site of the PTM writers. Overall, a spray-type PTM conceptual framework is useful for comprehending the promiscuous PTM writer events that cannot be adequately explained by th |
doi_str_mv | 10.1016/j.tibs.2024.01.008 |
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A post-translational modification (PTM) occurs when a nucleophilic residue (e.g., lysine of a target protein) attacks electrophilic substrate molecules (e.g., acyl-AMP), involving writer enzymes or even occurring spontaneously. Traditionally, this phenomenon was thought to be sequence specific; however, recent research suggests that PTMs can also occur in a non-sequence-specific manner confined to a specific location in a cell. In this Opinion, we compile the accumulated evidence of spray-type PTMs and propose a mechanism for this phenomenon based on the exposure level of reactive electrophilic substrate molecules at the active site of the PTM writers. Overall, a spray-type PTM conceptual framework is useful for comprehending the promiscuous PTM writer events that cannot be adequately explained by the traditional concept of sequence-dependent PTM events.
A post-translational modification (PTM) occurs when a nucleophilic residue (e.g., lysine of a target protein) attacks electrophilic substrate molecules (e.g., acyl-AMP), involving writer enzymes or even occurring spontaneously. Traditionally, this phenomenon was thought to be sequence specific; however, recent research suggests that PTMs can also occur in a non-sequence-specific manner confined to a specific location in a cell. In this Opinion, we compile the accumulated evidence of spray-type PTMs and propose a mechanism for this phenomenon based on the exposure level of reactive electrophilic substrate molecules at the active site of the PTM writers. Overall, a spray-type PTM conceptual framework is useful for comprehending the promiscuous PTM writer events that cannot be adequately explained by the traditional concept of sequence-dependent PTM events.</description><identifier>ISSN: 0968-0004</identifier><identifier>EISSN: 1362-4326</identifier><identifier>DOI: 10.1016/j.tibs.2024.01.008</identifier><identifier>PMID: 38443288</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>active sites ; acylation ; ADPRylation ; Lewis acids ; Lewis bases ; lysine ; Lysine - metabolism ; post-translational modification ; promiscuity ; Protein Processing, Post-Translational ; Proteins - chemistry ; proximity ; proximity labeling ; ubiquitination</subject><ispartof>Trends in biochemical sciences (Amsterdam. Regular ed.), 2024-03, Vol.49 (3), p.208-223</ispartof><rights>2024 The Authors</rights><rights>Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c384t-a92c2dc821052d03a55147dde670a172178004aaa2a0652569258236d33e153d3</cites><orcidid>0009-0008-2250-3852 ; 0000-0002-3817-3455</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0968000424000239$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>314,776,780,3536,27903,27904,65309</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38443288$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lee, Yun-Bin</creatorcontrib><creatorcontrib>Rhee, Hyun-Woo</creatorcontrib><title>Spray-type modifications: an emerging paradigm in post-translational modifications</title><title>Trends in biochemical sciences (Amsterdam. Regular ed.)</title><addtitle>Trends Biochem Sci</addtitle><description>Recent and intriguing research demonstrates that post-translational modification (PTM) events can act in a local-dependent manner in addition to the traditional sequence-dependent manner.We propose the spray-type PTM concept and describe a mechanism that focuses on the exposure level of reactive electrophilic substrate molecules at the active sites of PTM enzymes.Spray-type PTMs involve chemical interactions between electrophilic groups and nucleophilic moieties that are in close proximity, resembling the principles behind contemporary proximity labeling techniques.We further propose that spray-type PTMs play crucial roles in the simultaneous regulation of proteins within the same location, which are crucial for efficient responses to various stressors such as DNA breaks, heat shock stress, or viral infection.
A post-translational modification (PTM) occurs when a nucleophilic residue (e.g., lysine of a target protein) attacks electrophilic substrate molecules (e.g., acyl-AMP), involving writer enzymes or even occurring spontaneously. Traditionally, this phenomenon was thought to be sequence specific; however, recent research suggests that PTMs can also occur in a non-sequence-specific manner confined to a specific location in a cell. In this Opinion, we compile the accumulated evidence of spray-type PTMs and propose a mechanism for this phenomenon based on the exposure level of reactive electrophilic substrate molecules at the active site of the PTM writers. Overall, a spray-type PTM conceptual framework is useful for comprehending the promiscuous PTM writer events that cannot be adequately explained by the traditional concept of sequence-dependent PTM events.
A post-translational modification (PTM) occurs when a nucleophilic residue (e.g., lysine of a target protein) attacks electrophilic substrate molecules (e.g., acyl-AMP), involving writer enzymes or even occurring spontaneously. Traditionally, this phenomenon was thought to be sequence specific; however, recent research suggests that PTMs can also occur in a non-sequence-specific manner confined to a specific location in a cell. In this Opinion, we compile the accumulated evidence of spray-type PTMs and propose a mechanism for this phenomenon based on the exposure level of reactive electrophilic substrate molecules at the active site of the PTM writers. Overall, a spray-type PTM conceptual framework is useful for comprehending the promiscuous PTM writer events that cannot be adequately explained by the traditional concept of sequence-dependent PTM events.</description><subject>active sites</subject><subject>acylation</subject><subject>ADPRylation</subject><subject>Lewis acids</subject><subject>Lewis bases</subject><subject>lysine</subject><subject>Lysine - metabolism</subject><subject>post-translational modification</subject><subject>promiscuity</subject><subject>Protein Processing, Post-Translational</subject><subject>Proteins - chemistry</subject><subject>proximity</subject><subject>proximity labeling</subject><subject>ubiquitination</subject><issn>0968-0004</issn><issn>1362-4326</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkEtLAzEUhYMoWh9_wIXM0s2MN8kkkxE3UnyBIPhYh2uSlpR5mUyF_ntTq4IbXd3Nd865fIQcUygoUHm2KEb_GgsGrCyAFgBqi0wolywvOZPbZAK1VDkAlHtkP8YFABVVJXbJHldlQpSakMenIeAqH1eDy9re-pk3OPq-i-cZdplrXZj7bp4NGND6eZv5Lhv6OOZjwC42nyg2v5OHZGeGTXRHX_eAvFxfPU9v8_uHm7vp5X1u0vyYY80Ms0YxCoJZ4CgELStrnawAacVopdLniMgQpGBC1kwoxqXl3FHBLT8gp5veIfRvSxdH3fpoXNNg5_pl1DxRkqat-l-U1VwxJaAqE8o2qAl9jMHN9BB8i2GlKei1dr3Qa-16rV0D1Ul7Cp189S9fW2d_It-eE3CxAVwS8u5d0NF41xlnfXBm1Lb3f_V_AFj7krA</recordid><startdate>202403</startdate><enddate>202403</enddate><creator>Lee, Yun-Bin</creator><creator>Rhee, Hyun-Woo</creator><general>Elsevier Ltd</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope><orcidid>https://orcid.org/0009-0008-2250-3852</orcidid><orcidid>https://orcid.org/0000-0002-3817-3455</orcidid></search><sort><creationdate>202403</creationdate><title>Spray-type modifications: an emerging paradigm in post-translational modifications</title><author>Lee, Yun-Bin ; Rhee, Hyun-Woo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c384t-a92c2dc821052d03a55147dde670a172178004aaa2a0652569258236d33e153d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>active sites</topic><topic>acylation</topic><topic>ADPRylation</topic><topic>Lewis acids</topic><topic>Lewis bases</topic><topic>lysine</topic><topic>Lysine - metabolism</topic><topic>post-translational modification</topic><topic>promiscuity</topic><topic>Protein Processing, Post-Translational</topic><topic>Proteins - chemistry</topic><topic>proximity</topic><topic>proximity labeling</topic><topic>ubiquitination</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lee, Yun-Bin</creatorcontrib><creatorcontrib>Rhee, Hyun-Woo</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Trends in biochemical sciences (Amsterdam. Regular ed.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lee, Yun-Bin</au><au>Rhee, Hyun-Woo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Spray-type modifications: an emerging paradigm in post-translational modifications</atitle><jtitle>Trends in biochemical sciences (Amsterdam. Regular ed.)</jtitle><addtitle>Trends Biochem Sci</addtitle><date>2024-03</date><risdate>2024</risdate><volume>49</volume><issue>3</issue><spage>208</spage><epage>223</epage><pages>208-223</pages><issn>0968-0004</issn><eissn>1362-4326</eissn><abstract>Recent and intriguing research demonstrates that post-translational modification (PTM) events can act in a local-dependent manner in addition to the traditional sequence-dependent manner.We propose the spray-type PTM concept and describe a mechanism that focuses on the exposure level of reactive electrophilic substrate molecules at the active sites of PTM enzymes.Spray-type PTMs involve chemical interactions between electrophilic groups and nucleophilic moieties that are in close proximity, resembling the principles behind contemporary proximity labeling techniques.We further propose that spray-type PTMs play crucial roles in the simultaneous regulation of proteins within the same location, which are crucial for efficient responses to various stressors such as DNA breaks, heat shock stress, or viral infection.
A post-translational modification (PTM) occurs when a nucleophilic residue (e.g., lysine of a target protein) attacks electrophilic substrate molecules (e.g., acyl-AMP), involving writer enzymes or even occurring spontaneously. Traditionally, this phenomenon was thought to be sequence specific; however, recent research suggests that PTMs can also occur in a non-sequence-specific manner confined to a specific location in a cell. In this Opinion, we compile the accumulated evidence of spray-type PTMs and propose a mechanism for this phenomenon based on the exposure level of reactive electrophilic substrate molecules at the active site of the PTM writers. Overall, a spray-type PTM conceptual framework is useful for comprehending the promiscuous PTM writer events that cannot be adequately explained by the traditional concept of sequence-dependent PTM events.
A post-translational modification (PTM) occurs when a nucleophilic residue (e.g., lysine of a target protein) attacks electrophilic substrate molecules (e.g., acyl-AMP), involving writer enzymes or even occurring spontaneously. Traditionally, this phenomenon was thought to be sequence specific; however, recent research suggests that PTMs can also occur in a non-sequence-specific manner confined to a specific location in a cell. In this Opinion, we compile the accumulated evidence of spray-type PTMs and propose a mechanism for this phenomenon based on the exposure level of reactive electrophilic substrate molecules at the active site of the PTM writers. Overall, a spray-type PTM conceptual framework is useful for comprehending the promiscuous PTM writer events that cannot be adequately explained by the traditional concept of sequence-dependent PTM events.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>38443288</pmid><doi>10.1016/j.tibs.2024.01.008</doi><tpages>16</tpages><orcidid>https://orcid.org/0009-0008-2250-3852</orcidid><orcidid>https://orcid.org/0000-0002-3817-3455</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | active sites acylation ADPRylation Lewis acids Lewis bases lysine Lysine - metabolism post-translational modification promiscuity Protein Processing, Post-Translational Proteins - chemistry proximity proximity labeling ubiquitination |
title | Spray-type modifications: an emerging paradigm in post-translational modifications |
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