A simple graphene oxide‐based DNA purification strategy for plant pathogen detection

BACKGROUND The on‐site molecular detection of plant pathogens is particularly important for the development of sustainable agriculture. Extracting DNA from plant tissues, microbes or coexisting environments is complex, labor‐intensive and time‐consuming. To facilitate this process, we propose a DNA...

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Veröffentlicht in:Pest management science 2024-07, Vol.80 (7), p.3516-3525
Hauptverfasser: Zhang, Jing, Wang, Xiaochang, Ao, Ningjing, Zou, Huayan, Li, Jingwei, Shao, Huijuan, Kageyama, Koji, Feng, Wenzhuo
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container_end_page 3525
container_issue 7
container_start_page 3516
container_title Pest management science
container_volume 80
creator Zhang, Jing
Wang, Xiaochang
Ao, Ningjing
Zou, Huayan
Li, Jingwei
Shao, Huijuan
Kageyama, Koji
Feng, Wenzhuo
description BACKGROUND The on‐site molecular detection of plant pathogens is particularly important for the development of sustainable agriculture. Extracting DNA from plant tissues, microbes or coexisting environments is complex, labor‐intensive and time‐consuming. To facilitate this process, we propose a DNA purification strategy based on graphene oxide (GO). RESULTS The excellent adsorption ability of GO was verified by visualizing changes in its microscopic surface and macroscopic mixture. To further optimize the DNA purification, we determined the optimal GO concentration and treatment time at 95 °C (2 mg mL−1 and 2 min, respectively). We confirmed that our strategy is effective on plant tissues and various microorganisms, and that the obtained DNA can be directly used for polymerase chain reaction amplification. Combining the proposed GO‐based DNA purification method with the loop‐mediated isothermal amplification method is superior, in terms of the required steps, time, cost and detection effect, to the cetyltrimethylammonium bromide method and a commercial kit for detecting plant pathogens. CONCLUSION We present a feasible, rapid, simple and low‐cost DNA purification method with high practical value for scientific applications in plant pathogen detection. This strategy can also provide important technical support for future research on plant–microbial microenvironments. © 2024 Society of Chemical Industry. A feasible, rapid, simple and low‐cost DNA purification strategy based on graphene oxide was proposed for plant pathogen detection.
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Extracting DNA from plant tissues, microbes or coexisting environments is complex, labor‐intensive and time‐consuming. To facilitate this process, we propose a DNA purification strategy based on graphene oxide (GO). RESULTS The excellent adsorption ability of GO was verified by visualizing changes in its microscopic surface and macroscopic mixture. To further optimize the DNA purification, we determined the optimal GO concentration and treatment time at 95 °C (2 mg mL−1 and 2 min, respectively). We confirmed that our strategy is effective on plant tissues and various microorganisms, and that the obtained DNA can be directly used for polymerase chain reaction amplification. Combining the proposed GO‐based DNA purification method with the loop‐mediated isothermal amplification method is superior, in terms of the required steps, time, cost and detection effect, to the cetyltrimethylammonium bromide method and a commercial kit for detecting plant pathogens. CONCLUSION We present a feasible, rapid, simple and low‐cost DNA purification method with high practical value for scientific applications in plant pathogen detection. This strategy can also provide important technical support for future research on plant–microbial microenvironments. © 2024 Society of Chemical Industry. A feasible, rapid, simple and low‐cost DNA purification strategy based on graphene oxide was proposed for plant pathogen detection.</description><identifier>ISSN: 1526-498X</identifier><identifier>EISSN: 1526-4998</identifier><identifier>DOI: 10.1002/ps.8056</identifier><identifier>PMID: 38441302</identifier><language>eng</language><publisher>Chichester, UK: John Wiley &amp; Sons, Ltd</publisher><subject>Agricultural economics ; Amplification ; Cetyltrimethylammonium bromide ; Deoxyribonucleic acid ; DNA ; DNA purification ; Graphene ; graphene oxide ; LAMP detection ; Microenvironments ; Microorganisms ; Optimization ; Pathogens ; PCR ; Plant extracts ; Plant tissues ; plant–microbial microenvironment ; Polymerase chain reaction ; Purification ; Sustainable agriculture ; Sustainable development</subject><ispartof>Pest management science, 2024-07, Vol.80 (7), p.3516-3525</ispartof><rights>2024 Society of Chemical Industry.</rights><rights>Copyright © 2024 Society of Chemical Industry</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c3076-3f064721fd3e06919bc9c35d9f7fb407751c7fcf95c5b3311c75d0ff314a681e3</cites><orcidid>0000-0001-6114-2051</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fps.8056$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fps.8056$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1416,27923,27924,45573,45574</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38441302$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Jing</creatorcontrib><creatorcontrib>Wang, Xiaochang</creatorcontrib><creatorcontrib>Ao, Ningjing</creatorcontrib><creatorcontrib>Zou, Huayan</creatorcontrib><creatorcontrib>Li, Jingwei</creatorcontrib><creatorcontrib>Shao, Huijuan</creatorcontrib><creatorcontrib>Kageyama, Koji</creatorcontrib><creatorcontrib>Feng, Wenzhuo</creatorcontrib><title>A simple graphene oxide‐based DNA purification strategy for plant pathogen detection</title><title>Pest management science</title><addtitle>Pest Manag Sci</addtitle><description>BACKGROUND The on‐site molecular detection of plant pathogens is particularly important for the development of sustainable agriculture. Extracting DNA from plant tissues, microbes or coexisting environments is complex, labor‐intensive and time‐consuming. To facilitate this process, we propose a DNA purification strategy based on graphene oxide (GO). RESULTS The excellent adsorption ability of GO was verified by visualizing changes in its microscopic surface and macroscopic mixture. To further optimize the DNA purification, we determined the optimal GO concentration and treatment time at 95 °C (2 mg mL−1 and 2 min, respectively). We confirmed that our strategy is effective on plant tissues and various microorganisms, and that the obtained DNA can be directly used for polymerase chain reaction amplification. Combining the proposed GO‐based DNA purification method with the loop‐mediated isothermal amplification method is superior, in terms of the required steps, time, cost and detection effect, to the cetyltrimethylammonium bromide method and a commercial kit for detecting plant pathogens. CONCLUSION We present a feasible, rapid, simple and low‐cost DNA purification method with high practical value for scientific applications in plant pathogen detection. This strategy can also provide important technical support for future research on plant–microbial microenvironments. © 2024 Society of Chemical Industry. 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CONCLUSION We present a feasible, rapid, simple and low‐cost DNA purification method with high practical value for scientific applications in plant pathogen detection. This strategy can also provide important technical support for future research on plant–microbial microenvironments. © 2024 Society of Chemical Industry. A feasible, rapid, simple and low‐cost DNA purification strategy based on graphene oxide was proposed for plant pathogen detection.</abstract><cop>Chichester, UK</cop><pub>John Wiley &amp; Sons, Ltd</pub><pmid>38441302</pmid><doi>10.1002/ps.8056</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0001-6114-2051</orcidid></addata></record>
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subjects Agricultural economics
Amplification
Cetyltrimethylammonium bromide
Deoxyribonucleic acid
DNA
DNA purification
Graphene
graphene oxide
LAMP detection
Microenvironments
Microorganisms
Optimization
Pathogens
PCR
Plant extracts
Plant tissues
plant–microbial microenvironment
Polymerase chain reaction
Purification
Sustainable agriculture
Sustainable development
title A simple graphene oxide‐based DNA purification strategy for plant pathogen detection
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