A simple graphene oxide‐based DNA purification strategy for plant pathogen detection
BACKGROUND The on‐site molecular detection of plant pathogens is particularly important for the development of sustainable agriculture. Extracting DNA from plant tissues, microbes or coexisting environments is complex, labor‐intensive and time‐consuming. To facilitate this process, we propose a DNA...
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Veröffentlicht in: | Pest management science 2024-07, Vol.80 (7), p.3516-3525 |
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creator | Zhang, Jing Wang, Xiaochang Ao, Ningjing Zou, Huayan Li, Jingwei Shao, Huijuan Kageyama, Koji Feng, Wenzhuo |
description | BACKGROUND
The on‐site molecular detection of plant pathogens is particularly important for the development of sustainable agriculture. Extracting DNA from plant tissues, microbes or coexisting environments is complex, labor‐intensive and time‐consuming. To facilitate this process, we propose a DNA purification strategy based on graphene oxide (GO).
RESULTS
The excellent adsorption ability of GO was verified by visualizing changes in its microscopic surface and macroscopic mixture. To further optimize the DNA purification, we determined the optimal GO concentration and treatment time at 95 °C (2 mg mL−1 and 2 min, respectively). We confirmed that our strategy is effective on plant tissues and various microorganisms, and that the obtained DNA can be directly used for polymerase chain reaction amplification. Combining the proposed GO‐based DNA purification method with the loop‐mediated isothermal amplification method is superior, in terms of the required steps, time, cost and detection effect, to the cetyltrimethylammonium bromide method and a commercial kit for detecting plant pathogens.
CONCLUSION
We present a feasible, rapid, simple and low‐cost DNA purification method with high practical value for scientific applications in plant pathogen detection. This strategy can also provide important technical support for future research on plant–microbial microenvironments. © 2024 Society of Chemical Industry.
A feasible, rapid, simple and low‐cost DNA purification strategy based on graphene oxide was proposed for plant pathogen detection. |
doi_str_mv | 10.1002/ps.8056 |
format | Article |
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The on‐site molecular detection of plant pathogens is particularly important for the development of sustainable agriculture. Extracting DNA from plant tissues, microbes or coexisting environments is complex, labor‐intensive and time‐consuming. To facilitate this process, we propose a DNA purification strategy based on graphene oxide (GO).
RESULTS
The excellent adsorption ability of GO was verified by visualizing changes in its microscopic surface and macroscopic mixture. To further optimize the DNA purification, we determined the optimal GO concentration and treatment time at 95 °C (2 mg mL−1 and 2 min, respectively). We confirmed that our strategy is effective on plant tissues and various microorganisms, and that the obtained DNA can be directly used for polymerase chain reaction amplification. Combining the proposed GO‐based DNA purification method with the loop‐mediated isothermal amplification method is superior, in terms of the required steps, time, cost and detection effect, to the cetyltrimethylammonium bromide method and a commercial kit for detecting plant pathogens.
CONCLUSION
We present a feasible, rapid, simple and low‐cost DNA purification method with high practical value for scientific applications in plant pathogen detection. This strategy can also provide important technical support for future research on plant–microbial microenvironments. © 2024 Society of Chemical Industry.
A feasible, rapid, simple and low‐cost DNA purification strategy based on graphene oxide was proposed for plant pathogen detection.</description><identifier>ISSN: 1526-498X</identifier><identifier>EISSN: 1526-4998</identifier><identifier>DOI: 10.1002/ps.8056</identifier><identifier>PMID: 38441302</identifier><language>eng</language><publisher>Chichester, UK: John Wiley & Sons, Ltd</publisher><subject>Agricultural economics ; Amplification ; Cetyltrimethylammonium bromide ; Deoxyribonucleic acid ; DNA ; DNA purification ; Graphene ; graphene oxide ; LAMP detection ; Microenvironments ; Microorganisms ; Optimization ; Pathogens ; PCR ; Plant extracts ; Plant tissues ; plant–microbial microenvironment ; Polymerase chain reaction ; Purification ; Sustainable agriculture ; Sustainable development</subject><ispartof>Pest management science, 2024-07, Vol.80 (7), p.3516-3525</ispartof><rights>2024 Society of Chemical Industry.</rights><rights>Copyright © 2024 Society of Chemical Industry</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c3076-3f064721fd3e06919bc9c35d9f7fb407751c7fcf95c5b3311c75d0ff314a681e3</cites><orcidid>0000-0001-6114-2051</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fps.8056$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fps.8056$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1416,27923,27924,45573,45574</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38441302$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Jing</creatorcontrib><creatorcontrib>Wang, Xiaochang</creatorcontrib><creatorcontrib>Ao, Ningjing</creatorcontrib><creatorcontrib>Zou, Huayan</creatorcontrib><creatorcontrib>Li, Jingwei</creatorcontrib><creatorcontrib>Shao, Huijuan</creatorcontrib><creatorcontrib>Kageyama, Koji</creatorcontrib><creatorcontrib>Feng, Wenzhuo</creatorcontrib><title>A simple graphene oxide‐based DNA purification strategy for plant pathogen detection</title><title>Pest management science</title><addtitle>Pest Manag Sci</addtitle><description>BACKGROUND
The on‐site molecular detection of plant pathogens is particularly important for the development of sustainable agriculture. Extracting DNA from plant tissues, microbes or coexisting environments is complex, labor‐intensive and time‐consuming. To facilitate this process, we propose a DNA purification strategy based on graphene oxide (GO).
RESULTS
The excellent adsorption ability of GO was verified by visualizing changes in its microscopic surface and macroscopic mixture. To further optimize the DNA purification, we determined the optimal GO concentration and treatment time at 95 °C (2 mg mL−1 and 2 min, respectively). We confirmed that our strategy is effective on plant tissues and various microorganisms, and that the obtained DNA can be directly used for polymerase chain reaction amplification. Combining the proposed GO‐based DNA purification method with the loop‐mediated isothermal amplification method is superior, in terms of the required steps, time, cost and detection effect, to the cetyltrimethylammonium bromide method and a commercial kit for detecting plant pathogens.
CONCLUSION
We present a feasible, rapid, simple and low‐cost DNA purification method with high practical value for scientific applications in plant pathogen detection. This strategy can also provide important technical support for future research on plant–microbial microenvironments. © 2024 Society of Chemical Industry.
A feasible, rapid, simple and low‐cost DNA purification strategy based on graphene oxide was proposed for plant pathogen detection.</description><subject>Agricultural economics</subject><subject>Amplification</subject><subject>Cetyltrimethylammonium bromide</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA purification</subject><subject>Graphene</subject><subject>graphene oxide</subject><subject>LAMP detection</subject><subject>Microenvironments</subject><subject>Microorganisms</subject><subject>Optimization</subject><subject>Pathogens</subject><subject>PCR</subject><subject>Plant extracts</subject><subject>Plant tissues</subject><subject>plant–microbial microenvironment</subject><subject>Polymerase chain reaction</subject><subject>Purification</subject><subject>Sustainable agriculture</subject><subject>Sustainable development</subject><issn>1526-498X</issn><issn>1526-4998</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNp10N1KwzAYBuAgitMp3oEEPFCQzaRp2uZwzF8YKviDZyFNv2wdXRuTFt2Zl-A1eiV2bu5A8Chf4OHl5UXogJI-JSQ4s76fEB5toB3Kg6gXCpFsru_kpYN2vZ8SQoQQwTbqsCQMKSPBDnoeYJ_PbAF47JSdQAm4es8z-Pr4TJWHDJ_fDrBtXG5yreq8KrGvnaphPMemctgWqqyxVfWkGkOJM6hBL9Qe2jKq8LC_ervo6fLicXjdG91d3QwHo55mJI56zJAojANqMgYkElSkWmjGM2Fik4YkjjnVsdFGcM1Txmj74xkxhtFQRQkF1kUny1zrqtcGfC1nuddQtLWgarwMBItjEiQhb-nRHzqtGle27SRrW0QhpVy06niptKu8d2CkdflMubmkRC6mltbLxdStPFzlNekMsrX73bYFp0vwlhcw_y9H3j_8xH0DnMOGug</recordid><startdate>202407</startdate><enddate>202407</enddate><creator>Zhang, Jing</creator><creator>Wang, Xiaochang</creator><creator>Ao, Ningjing</creator><creator>Zou, Huayan</creator><creator>Li, Jingwei</creator><creator>Shao, Huijuan</creator><creator>Kageyama, Koji</creator><creator>Feng, Wenzhuo</creator><general>John Wiley & Sons, Ltd</general><general>Wiley Subscription Services, Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QR</scope><scope>7SS</scope><scope>7ST</scope><scope>7T7</scope><scope>7U7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>SOI</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-6114-2051</orcidid></search><sort><creationdate>202407</creationdate><title>A simple graphene oxide‐based DNA purification strategy for plant pathogen detection</title><author>Zhang, Jing ; Wang, Xiaochang ; Ao, Ningjing ; Zou, Huayan ; Li, Jingwei ; Shao, Huijuan ; Kageyama, Koji ; Feng, Wenzhuo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3076-3f064721fd3e06919bc9c35d9f7fb407751c7fcf95c5b3311c75d0ff314a681e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Agricultural economics</topic><topic>Amplification</topic><topic>Cetyltrimethylammonium bromide</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA purification</topic><topic>Graphene</topic><topic>graphene oxide</topic><topic>LAMP detection</topic><topic>Microenvironments</topic><topic>Microorganisms</topic><topic>Optimization</topic><topic>Pathogens</topic><topic>PCR</topic><topic>Plant extracts</topic><topic>Plant tissues</topic><topic>plant–microbial microenvironment</topic><topic>Polymerase chain reaction</topic><topic>Purification</topic><topic>Sustainable agriculture</topic><topic>Sustainable development</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Jing</creatorcontrib><creatorcontrib>Wang, Xiaochang</creatorcontrib><creatorcontrib>Ao, Ningjing</creatorcontrib><creatorcontrib>Zou, Huayan</creatorcontrib><creatorcontrib>Li, Jingwei</creatorcontrib><creatorcontrib>Shao, Huijuan</creatorcontrib><creatorcontrib>Kageyama, Koji</creatorcontrib><creatorcontrib>Feng, Wenzhuo</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Chemoreception Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Toxicology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environment Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Pest management science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Jing</au><au>Wang, Xiaochang</au><au>Ao, Ningjing</au><au>Zou, Huayan</au><au>Li, Jingwei</au><au>Shao, Huijuan</au><au>Kageyama, Koji</au><au>Feng, Wenzhuo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A simple graphene oxide‐based DNA purification strategy for plant pathogen detection</atitle><jtitle>Pest management science</jtitle><addtitle>Pest Manag Sci</addtitle><date>2024-07</date><risdate>2024</risdate><volume>80</volume><issue>7</issue><spage>3516</spage><epage>3525</epage><pages>3516-3525</pages><issn>1526-498X</issn><eissn>1526-4998</eissn><abstract>BACKGROUND
The on‐site molecular detection of plant pathogens is particularly important for the development of sustainable agriculture. Extracting DNA from plant tissues, microbes or coexisting environments is complex, labor‐intensive and time‐consuming. To facilitate this process, we propose a DNA purification strategy based on graphene oxide (GO).
RESULTS
The excellent adsorption ability of GO was verified by visualizing changes in its microscopic surface and macroscopic mixture. To further optimize the DNA purification, we determined the optimal GO concentration and treatment time at 95 °C (2 mg mL−1 and 2 min, respectively). We confirmed that our strategy is effective on plant tissues and various microorganisms, and that the obtained DNA can be directly used for polymerase chain reaction amplification. Combining the proposed GO‐based DNA purification method with the loop‐mediated isothermal amplification method is superior, in terms of the required steps, time, cost and detection effect, to the cetyltrimethylammonium bromide method and a commercial kit for detecting plant pathogens.
CONCLUSION
We present a feasible, rapid, simple and low‐cost DNA purification method with high practical value for scientific applications in plant pathogen detection. This strategy can also provide important technical support for future research on plant–microbial microenvironments. © 2024 Society of Chemical Industry.
A feasible, rapid, simple and low‐cost DNA purification strategy based on graphene oxide was proposed for plant pathogen detection.</abstract><cop>Chichester, UK</cop><pub>John Wiley & Sons, Ltd</pub><pmid>38441302</pmid><doi>10.1002/ps.8056</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0001-6114-2051</orcidid></addata></record> |
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subjects | Agricultural economics Amplification Cetyltrimethylammonium bromide Deoxyribonucleic acid DNA DNA purification Graphene graphene oxide LAMP detection Microenvironments Microorganisms Optimization Pathogens PCR Plant extracts Plant tissues plant–microbial microenvironment Polymerase chain reaction Purification Sustainable agriculture Sustainable development |
title | A simple graphene oxide‐based DNA purification strategy for plant pathogen detection |
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