NanoLocz: Image Analysis Platform for AFM, High‐Speed AFM, and Localization AFM
Atomic Force Microscopy (AFM), High‐Speed AFM (HS‐AFM) simulation AFM, and Localization AFM (LAFM) enable the study of molecules and surfaces with increasingly higher spatiotemporal resolution. However, effective and rapid analysis of the images and movies produced by these techniques can be challen...
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description | Atomic Force Microscopy (AFM), High‐Speed AFM (HS‐AFM) simulation AFM, and Localization AFM (LAFM) enable the study of molecules and surfaces with increasingly higher spatiotemporal resolution. However, effective and rapid analysis of the images and movies produced by these techniques can be challenging, often requiring the use of multiple image processing software applications and scripts. Here, NanoLocz, an open‐source solution that offers advanced analysis capabilities for the AFM community, is presented. Integration and continued development of AFM analysis tools is essential to improve access to data, increase throughput, and open new analysis opportunities. NanoLocz efficiently leverages the rich data AFM has to offer by incorporating and combining existing and newly developed analysis methods for AFM, HS‐AFM, simulation AFM, and LAFM seamlessly. It facilitates and streamlines AFM analysis workflows from import of raw data, through to various analysis workflows. Here, the study demonstrates the capabilities of NanoLocz and the new methods it enables including single‐molecule LAFM, time‐resolved LAFM, and simulation LAFM.
NanoLocz, an open‐source solution that addresses the challenge of analyzing Atomic Force Microscopy (AFM), High‐Speed AFM (HS‐AFM), Simulation AFM, and Localization AFM (LAFM) data. This platform streamlines workflows, improving accessibility, throughput, and unlocking new analysis methods. NanoLocz seamlessly integrates existing and novel methods, here the study demonstrates new capabilities in single‐molecule LAFM, time‐resolved LAFM, and simulation LAFM. |
doi_str_mv | 10.1002/smtd.202301766 |
format | Article |
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NanoLocz, an open‐source solution that addresses the challenge of analyzing Atomic Force Microscopy (AFM), High‐Speed AFM (HS‐AFM), Simulation AFM, and Localization AFM (LAFM) data. This platform streamlines workflows, improving accessibility, throughput, and unlocking new analysis methods. NanoLocz seamlessly integrates existing and novel methods, here the study demonstrates new capabilities in single‐molecule LAFM, time‐resolved LAFM, and simulation LAFM.</description><identifier>ISSN: 2366-9608</identifier><identifier>EISSN: 2366-9608</identifier><identifier>DOI: 10.1002/smtd.202301766</identifier><identifier>PMID: 38426645</identifier><language>eng</language><publisher>Germany</publisher><subject>AFM ; DNA origami ; high‐speed AFM ; image processing ; simulation AFM ; structural biology</subject><ispartof>Small methods, 2024-10, Vol.8 (10), p.e2301766-n/a</ispartof><rights>2024 The Authors. Small Methods published by Wiley‐VCH GmbH</rights><rights>2024 The Authors. Small Methods published by Wiley-VCH GmbH.</rights><rights>2024 The Authors. Small Methods published by Wiley‐VCH GmbH.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c3406-959737743552ab6e2dab6cc187a2b2c821b4a4b9712226a64c26b4998e86f6b83</cites><orcidid>0000-0001-6431-2191</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fsmtd.202301766$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fsmtd.202301766$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38426645$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Heath, George R.</creatorcontrib><creatorcontrib>Micklethwaite, Emily</creatorcontrib><creatorcontrib>Storer, Tabitha M.</creatorcontrib><title>NanoLocz: Image Analysis Platform for AFM, High‐Speed AFM, and Localization AFM</title><title>Small methods</title><addtitle>Small Methods</addtitle><description>Atomic Force Microscopy (AFM), High‐Speed AFM (HS‐AFM) simulation AFM, and Localization AFM (LAFM) enable the study of molecules and surfaces with increasingly higher spatiotemporal resolution. However, effective and rapid analysis of the images and movies produced by these techniques can be challenging, often requiring the use of multiple image processing software applications and scripts. Here, NanoLocz, an open‐source solution that offers advanced analysis capabilities for the AFM community, is presented. Integration and continued development of AFM analysis tools is essential to improve access to data, increase throughput, and open new analysis opportunities. NanoLocz efficiently leverages the rich data AFM has to offer by incorporating and combining existing and newly developed analysis methods for AFM, HS‐AFM, simulation AFM, and LAFM seamlessly. It facilitates and streamlines AFM analysis workflows from import of raw data, through to various analysis workflows. Here, the study demonstrates the capabilities of NanoLocz and the new methods it enables including single‐molecule LAFM, time‐resolved LAFM, and simulation LAFM.
NanoLocz, an open‐source solution that addresses the challenge of analyzing Atomic Force Microscopy (AFM), High‐Speed AFM (HS‐AFM), Simulation AFM, and Localization AFM (LAFM) data. This platform streamlines workflows, improving accessibility, throughput, and unlocking new analysis methods. NanoLocz seamlessly integrates existing and novel methods, here the study demonstrates new capabilities in single‐molecule LAFM, time‐resolved LAFM, and simulation LAFM.</description><subject>AFM</subject><subject>DNA origami</subject><subject>high‐speed AFM</subject><subject>image processing</subject><subject>simulation AFM</subject><subject>structural biology</subject><issn>2366-9608</issn><issn>2366-9608</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><recordid>eNqFkM1OAjEUhRujEYNsXZpZuhBsbzvtjDuCIiTgT8B10-l0cMz84HSIgZWP4DP6JJYMojs3996cfOfk5iB0RnCPYAxXNq_jHmCgmAjOD9AJUM67IcfB4Z-7hTrWvmJnwIT6QI5RiwYMOGf-CXq6V0U5KfXm2hvnamG8fqGytU2t95ipOimr3HPD6w-nl94oXbx8fXzOlsbEjaKK2HNmlaUbVadlsVVP0VGiMms6u91Gz8Pb-WDUnTzcjQf9SVdTht1nfiioEIz6PqiIG4jd1JoEQkEEOgASMcWiUBAA4IozDTxiYRiYgCc8CmgbXTS5y6p8Wxlbyzy12mSZKky5shJCykAI6nOH9hpUV6W1lUnkskpzVa0lwXLbpNw2KfdNOsP5LnsV5Sbe4z-9OSBsgPc0M-t_4uRsOr_5Df8GtSJ9dg</recordid><startdate>20241001</startdate><enddate>20241001</enddate><creator>Heath, George R.</creator><creator>Micklethwaite, Emily</creator><creator>Storer, Tabitha M.</creator><scope>24P</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-6431-2191</orcidid></search><sort><creationdate>20241001</creationdate><title>NanoLocz: Image Analysis Platform for AFM, High‐Speed AFM, and Localization AFM</title><author>Heath, George R. ; Micklethwaite, Emily ; Storer, Tabitha M.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3406-959737743552ab6e2dab6cc187a2b2c821b4a4b9712226a64c26b4998e86f6b83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>AFM</topic><topic>DNA origami</topic><topic>high‐speed AFM</topic><topic>image processing</topic><topic>simulation AFM</topic><topic>structural biology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Heath, George R.</creatorcontrib><creatorcontrib>Micklethwaite, Emily</creatorcontrib><creatorcontrib>Storer, Tabitha M.</creatorcontrib><collection>Wiley Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Small methods</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Heath, George R.</au><au>Micklethwaite, Emily</au><au>Storer, Tabitha M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>NanoLocz: Image Analysis Platform for AFM, High‐Speed AFM, and Localization AFM</atitle><jtitle>Small methods</jtitle><addtitle>Small Methods</addtitle><date>2024-10-01</date><risdate>2024</risdate><volume>8</volume><issue>10</issue><spage>e2301766</spage><epage>n/a</epage><pages>e2301766-n/a</pages><issn>2366-9608</issn><eissn>2366-9608</eissn><abstract>Atomic Force Microscopy (AFM), High‐Speed AFM (HS‐AFM) simulation AFM, and Localization AFM (LAFM) enable the study of molecules and surfaces with increasingly higher spatiotemporal resolution. However, effective and rapid analysis of the images and movies produced by these techniques can be challenging, often requiring the use of multiple image processing software applications and scripts. Here, NanoLocz, an open‐source solution that offers advanced analysis capabilities for the AFM community, is presented. Integration and continued development of AFM analysis tools is essential to improve access to data, increase throughput, and open new analysis opportunities. NanoLocz efficiently leverages the rich data AFM has to offer by incorporating and combining existing and newly developed analysis methods for AFM, HS‐AFM, simulation AFM, and LAFM seamlessly. It facilitates and streamlines AFM analysis workflows from import of raw data, through to various analysis workflows. Here, the study demonstrates the capabilities of NanoLocz and the new methods it enables including single‐molecule LAFM, time‐resolved LAFM, and simulation LAFM.
NanoLocz, an open‐source solution that addresses the challenge of analyzing Atomic Force Microscopy (AFM), High‐Speed AFM (HS‐AFM), Simulation AFM, and Localization AFM (LAFM) data. This platform streamlines workflows, improving accessibility, throughput, and unlocking new analysis methods. NanoLocz seamlessly integrates existing and novel methods, here the study demonstrates new capabilities in single‐molecule LAFM, time‐resolved LAFM, and simulation LAFM.</abstract><cop>Germany</cop><pmid>38426645</pmid><doi>10.1002/smtd.202301766</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0001-6431-2191</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | AFM DNA origami high‐speed AFM image processing simulation AFM structural biology |
title | NanoLocz: Image Analysis Platform for AFM, High‐Speed AFM, and Localization AFM |
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