Symmetry breaking and chiral amplification in prebiotic ligation reactions
The single chirality of biological molecules is a signature of life. Yet, rationalizing how single chirality emerged remains a challenging goal 1 . Research has commonly focused on initial symmetry breaking and subsequent enantioenrichment of monomer building blocks—sugars and amino acids—that compo...
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description | The single chirality of biological molecules is a signature of life. Yet, rationalizing how single chirality emerged remains a challenging goal
1
. Research has commonly focused on initial symmetry breaking and subsequent enantioenrichment of monomer building blocks—sugars and amino acids—that compose the genetic polymers RNA and DNA as well as peptides. If these building blocks are only partially enantioenriched, however, stalling of chain growth may occur, whimsically termed in the case of nucleic acids as “the problem of original syn”
2
. Here, in studying a new prebiotically plausible route to proteinogenic peptides
3
–
5
, we discovered that the reaction favours heterochiral ligation (that is, the ligation of
l
monomers with
d
monomers). Although this finding seems problematic for the prebiotic emergence of homochiral
l
-peptides, we demonstrate, paradoxically, that this heterochiral preference provides a mechanism for enantioenrichment in homochiral chains. Symmetry breaking, chiral amplification and chirality transfer processes occur for all reactants and products in multicomponent competitive reactions even when only one of the molecules in the complex mixture exhibits an imbalance in enantiomer concentrations (non-racemic). Solubility considerations rationalize further chemical purification and enhanced chiral amplification. Experimental data and kinetic modelling support this prebiotically plausible mechanism for the emergence of homochiral biological polymers.
A study of a new route to proteinogenic peptides reveals how heterochiral preference can lead to homochiral peptides in a prebiotic world. |
doi_str_mv | 10.1038/s41586-024-07059-y |
format | Article |
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1
. Research has commonly focused on initial symmetry breaking and subsequent enantioenrichment of monomer building blocks—sugars and amino acids—that compose the genetic polymers RNA and DNA as well as peptides. If these building blocks are only partially enantioenriched, however, stalling of chain growth may occur, whimsically termed in the case of nucleic acids as “the problem of original syn”
2
. Here, in studying a new prebiotically plausible route to proteinogenic peptides
3
–
5
, we discovered that the reaction favours heterochiral ligation (that is, the ligation of
l
monomers with
d
monomers). Although this finding seems problematic for the prebiotic emergence of homochiral
l
-peptides, we demonstrate, paradoxically, that this heterochiral preference provides a mechanism for enantioenrichment in homochiral chains. Symmetry breaking, chiral amplification and chirality transfer processes occur for all reactants and products in multicomponent competitive reactions even when only one of the molecules in the complex mixture exhibits an imbalance in enantiomer concentrations (non-racemic). Solubility considerations rationalize further chemical purification and enhanced chiral amplification. Experimental data and kinetic modelling support this prebiotically plausible mechanism for the emergence of homochiral biological polymers.
A study of a new route to proteinogenic peptides reveals how heterochiral preference can lead to homochiral peptides in a prebiotic world.</description><identifier>ISSN: 0028-0836</identifier><identifier>EISSN: 1476-4687</identifier><identifier>DOI: 10.1038/s41586-024-07059-y</identifier><identifier>PMID: 38418914</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>140/131 ; 631/181 ; 639/638/403/935 ; 639/638/904 ; Amino acids ; Amino Acids - chemistry ; Amplification ; Broken symmetry ; Chirality ; Enantiomers ; Humanities and Social Sciences ; Monomers ; multidisciplinary ; Nucleic acids ; Peptides ; Polymers ; Prebiotics ; RNA - chemistry ; Science ; Science (multidisciplinary) ; Solubility ; Stalling ; Stereoisomerism ; Symmetry</subject><ispartof>Nature (London), 2024-02, Vol.626 (8001), p.1019-1024</ispartof><rights>The Author(s), under exclusive licence to Springer Nature Limited 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2024. The Author(s), under exclusive licence to Springer Nature Limited.</rights><rights>Copyright Nature Publishing Group Feb 29, 2024</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-f8e58f47ad0faa1a73950e5459f6e22d9158074fde11a1dcd877e5bd65c47af83</citedby><cites>FETCH-LOGICAL-c375t-f8e58f47ad0faa1a73950e5459f6e22d9158074fde11a1dcd877e5bd65c47af83</cites><orcidid>0000-0002-8256-7240 ; 0000-0001-9829-8375</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1038/s41586-024-07059-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1038/s41586-024-07059-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38418914$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Deng, Min</creatorcontrib><creatorcontrib>Yu, Jinhan</creatorcontrib><creatorcontrib>Blackmond, Donna G.</creatorcontrib><title>Symmetry breaking and chiral amplification in prebiotic ligation reactions</title><title>Nature (London)</title><addtitle>Nature</addtitle><addtitle>Nature</addtitle><description>The single chirality of biological molecules is a signature of life. Yet, rationalizing how single chirality emerged remains a challenging goal
1
. Research has commonly focused on initial symmetry breaking and subsequent enantioenrichment of monomer building blocks—sugars and amino acids—that compose the genetic polymers RNA and DNA as well as peptides. If these building blocks are only partially enantioenriched, however, stalling of chain growth may occur, whimsically termed in the case of nucleic acids as “the problem of original syn”
2
. Here, in studying a new prebiotically plausible route to proteinogenic peptides
3
–
5
, we discovered that the reaction favours heterochiral ligation (that is, the ligation of
l
monomers with
d
monomers). Although this finding seems problematic for the prebiotic emergence of homochiral
l
-peptides, we demonstrate, paradoxically, that this heterochiral preference provides a mechanism for enantioenrichment in homochiral chains. Symmetry breaking, chiral amplification and chirality transfer processes occur for all reactants and products in multicomponent competitive reactions even when only one of the molecules in the complex mixture exhibits an imbalance in enantiomer concentrations (non-racemic). Solubility considerations rationalize further chemical purification and enhanced chiral amplification. Experimental data and kinetic modelling support this prebiotically plausible mechanism for the emergence of homochiral biological polymers.
A study of a new route to proteinogenic peptides reveals how heterochiral preference can lead to homochiral peptides in a prebiotic world.</description><subject>140/131</subject><subject>631/181</subject><subject>639/638/403/935</subject><subject>639/638/904</subject><subject>Amino acids</subject><subject>Amino Acids - chemistry</subject><subject>Amplification</subject><subject>Broken symmetry</subject><subject>Chirality</subject><subject>Enantiomers</subject><subject>Humanities and Social Sciences</subject><subject>Monomers</subject><subject>multidisciplinary</subject><subject>Nucleic acids</subject><subject>Peptides</subject><subject>Polymers</subject><subject>Prebiotics</subject><subject>RNA - chemistry</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Solubility</subject><subject>Stalling</subject><subject>Stereoisomerism</subject><subject>Symmetry</subject><issn>0028-0836</issn><issn>1476-4687</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kMtOxCAYRonROOPoC7gwTdy4qUK5dmkmXjOJC3VNKIWRsTehXfTtZeyoiQtXEDjf98MB4BTBSwSxuAoEUcFSmJEUckjzdNwDc0Q4SwkTfB_MIcxECgVmM3AUwgZCSBEnh2CGBUEiR2QOHp_Huja9H5PCG_XumnWimjLRb86rKlF1VznrtOpd2ySuSTpvCtf2TieVW0-nMaa3m3AMDqyqgjnZrQvwenvzsrxPV093D8vrVaoxp31qhaHCEq5KaJVCiuOcQkMJzS0zWVbm8VOQE1sahBQqdSk4N7QoGdUxZAVegIupt_Ptx2BCL2sXtKkq1Zh2CDLLMSYso5xF9PwPumkH38TXbak4mREGI5VNlPZtCN5Y2XlXKz9KBOXWtJxMy2hafpmWYwyd7aqHojblT-RbbQTwBIR41ayN_539T-0nThGKHg</recordid><startdate>20240229</startdate><enddate>20240229</enddate><creator>Deng, Min</creator><creator>Yu, Jinhan</creator><creator>Blackmond, Donna G.</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7ST</scope><scope>7T5</scope><scope>7TG</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>KL.</scope><scope>M7N</scope><scope>NAPCQ</scope><scope>P64</scope><scope>RC3</scope><scope>SOI</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-8256-7240</orcidid><orcidid>https://orcid.org/0000-0001-9829-8375</orcidid></search><sort><creationdate>20240229</creationdate><title>Symmetry breaking and chiral amplification in prebiotic ligation reactions</title><author>Deng, Min ; Yu, Jinhan ; Blackmond, Donna G.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-f8e58f47ad0faa1a73950e5459f6e22d9158074fde11a1dcd877e5bd65c47af83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>140/131</topic><topic>631/181</topic><topic>639/638/403/935</topic><topic>639/638/904</topic><topic>Amino acids</topic><topic>Amino Acids - chemistry</topic><topic>Amplification</topic><topic>Broken symmetry</topic><topic>Chirality</topic><topic>Enantiomers</topic><topic>Humanities and Social Sciences</topic><topic>Monomers</topic><topic>multidisciplinary</topic><topic>Nucleic acids</topic><topic>Peptides</topic><topic>Polymers</topic><topic>Prebiotics</topic><topic>RNA - chemistry</topic><topic>Science</topic><topic>Science (multidisciplinary)</topic><topic>Solubility</topic><topic>Stalling</topic><topic>Stereoisomerism</topic><topic>Symmetry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Deng, Min</creatorcontrib><creatorcontrib>Yu, Jinhan</creatorcontrib><creatorcontrib>Blackmond, Donna G.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Environment Abstracts</collection><collection>Immunology Abstracts</collection><collection>Meteorological & Geoastrophysical Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Meteorological & Geoastrophysical Abstracts - Academic</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Nursing & Allied Health Premium</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Nature (London)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Deng, Min</au><au>Yu, Jinhan</au><au>Blackmond, Donna G.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Symmetry breaking and chiral amplification in prebiotic ligation reactions</atitle><jtitle>Nature (London)</jtitle><stitle>Nature</stitle><addtitle>Nature</addtitle><date>2024-02-29</date><risdate>2024</risdate><volume>626</volume><issue>8001</issue><spage>1019</spage><epage>1024</epage><pages>1019-1024</pages><issn>0028-0836</issn><eissn>1476-4687</eissn><abstract>The single chirality of biological molecules is a signature of life. Yet, rationalizing how single chirality emerged remains a challenging goal
1
. Research has commonly focused on initial symmetry breaking and subsequent enantioenrichment of monomer building blocks—sugars and amino acids—that compose the genetic polymers RNA and DNA as well as peptides. If these building blocks are only partially enantioenriched, however, stalling of chain growth may occur, whimsically termed in the case of nucleic acids as “the problem of original syn”
2
. Here, in studying a new prebiotically plausible route to proteinogenic peptides
3
–
5
, we discovered that the reaction favours heterochiral ligation (that is, the ligation of
l
monomers with
d
monomers). Although this finding seems problematic for the prebiotic emergence of homochiral
l
-peptides, we demonstrate, paradoxically, that this heterochiral preference provides a mechanism for enantioenrichment in homochiral chains. Symmetry breaking, chiral amplification and chirality transfer processes occur for all reactants and products in multicomponent competitive reactions even when only one of the molecules in the complex mixture exhibits an imbalance in enantiomer concentrations (non-racemic). Solubility considerations rationalize further chemical purification and enhanced chiral amplification. Experimental data and kinetic modelling support this prebiotically plausible mechanism for the emergence of homochiral biological polymers.
A study of a new route to proteinogenic peptides reveals how heterochiral preference can lead to homochiral peptides in a prebiotic world.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>38418914</pmid><doi>10.1038/s41586-024-07059-y</doi><tpages>6</tpages><orcidid>https://orcid.org/0000-0002-8256-7240</orcidid><orcidid>https://orcid.org/0000-0001-9829-8375</orcidid></addata></record> |
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subjects | 140/131 631/181 639/638/403/935 639/638/904 Amino acids Amino Acids - chemistry Amplification Broken symmetry Chirality Enantiomers Humanities and Social Sciences Monomers multidisciplinary Nucleic acids Peptides Polymers Prebiotics RNA - chemistry Science Science (multidisciplinary) Solubility Stalling Stereoisomerism Symmetry |
title | Symmetry breaking and chiral amplification in prebiotic ligation reactions |
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