The Biocatalytic Potential of Aromatic Ammonia–Lyase from Loktanella atrilutea
Characterization of the aromatic ammonia–lyase from Loktanella atrilutea (LaAAL) revealed reduced activity towards canonical AAL substrates: l‐Phe, l‐Tyr, and l‐His, contrasted by its pronounced efficiency towards 3,4‐dimethoxy‐l‐phenylalanine. Assessing the optimal conditions, LaAAL exhibited maxim...
Gespeichert in:
Veröffentlicht in: | Chembiochem : a European journal of chemical biology 2024-05, Vol.25 (9), p.e202400011-n/a |
---|---|
Hauptverfasser: | , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | n/a |
---|---|
container_issue | 9 |
container_start_page | e202400011 |
container_title | Chembiochem : a European journal of chemical biology |
container_volume | 25 |
creator | Tomoiaga, R. B. Ágoston, G. Boros, K. Nagy, L. C. Toşa, M. I. Paizs, C. Bencze, L. C. |
description | Characterization of the aromatic ammonia–lyase from Loktanella atrilutea (LaAAL) revealed reduced activity towards canonical AAL substrates: l‐Phe, l‐Tyr, and l‐His, contrasted by its pronounced efficiency towards 3,4‐dimethoxy‐l‐phenylalanine. Assessing the optimal conditions, LaAAL exhibited maximal activity at pH 9.5 in the ammonia elimination reaction route, distinct from the typical pH ranges of most PALs and TALs. Within the exploration of the ammonia source for the opposite, synthetically valuable ammonia addition reaction, the stability of LaAAL exhibited a positive correlation with the ammonia concentration, with the highest stability in 4 M ammonium carbamate of unadjusted pH of ~9.5. While the enzyme activity increased with rising temperatures yet, the highest operational stability and highest stationary conversions of LaAAL were observed at 30 °C. The substrate scope analysis highlighted the catalytic adaptability of LaAAL in the hydroamination of diverse cinnamic acids, especially of meta‐substituted and di‐/multi–substituted analogues, with structural modelling exposing steric clashes between the substrates’ ortho–substituents and catalytic site residues. LaAAL showed a predilection for ammonia elimination, while classifying as a tyrosine ammonia–lyase (TAL) among the natural AAL classes. However, its distinctive attributes, such as genomic context, unique substrate specificity and catalytic fingerprint, suggest a potential natural role beyond those of known AAL classes.
The aromatic ammonia–lyase from Loktanella atrilutea (LaAAL) displays a high activity towards 3,4‐dimethoxy trans–cinnamic acid, with a surprisingly diminished activity towards natural AAL substrates. Under the optimal reaction conditions LaAAL exhibited versatility for the transformation of various cinnamic acids. While LaAAL might be classified as a tyrosine ammonia‐lyase (TAL, E.C. 4.3.1.23), its strongly distinctive attributes argue for an elemental role in the transformation of non‐natural phenylalanines. |
doi_str_mv | 10.1002/cbic.202400011 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2932940264</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2932940264</sourcerecordid><originalsourceid>FETCH-LOGICAL-c3281-93c9587ede42c7ad54f16bde4de5aee12f34daca64a2a9d217fe7078e7581ec53</originalsourceid><addsrcrecordid>eNqFkMtKw0AUhgdRrLetSwm4cdM6t2Qyy7Z4KRR0UdfD6eQEpyaZmkmQ7nwH39AnMaFVwY2rc_vOz89PyDmjI0Ypv7ZLZ0ecckkpZWyPHDEp9FAlQuzvesm5GpDjEFYdohPBDslApJLFWugj8rh4xmjivIUGik3jbPToG6waB0Xk82hc-xL67bgsfeXg8_1jvoGAUd4dorl_aaDCooAImtoVbYNwSg5yKAKe7eoJebq9WUzvh_OHu9l0PB9awVM21MLqOFWYoeRWQRbLnCXLbsowBkTGcyEzsJBI4KAzzlSOiqoUVZwytLE4IVdb3XXtX1sMjSldsL2XCn0bDNeCa0l5Ijv08g-68m1dde6MoFIrIWLVU6MtZWsfQo25WdeuhHpjGDV91qbP2vxk3T1c7GTbZYnZD_4dbgfoLfDmCtz8I2emk9n0V_wLnkGLpg</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3049733574</pqid></control><display><type>article</type><title>The Biocatalytic Potential of Aromatic Ammonia–Lyase from Loktanella atrilutea</title><source>MEDLINE</source><source>Wiley Online Library Journals Frontfile Complete</source><creator>Tomoiaga, R. B. ; Ágoston, G. ; Boros, K. ; Nagy, L. C. ; Toşa, M. I. ; Paizs, C. ; Bencze, L. C.</creator><creatorcontrib>Tomoiaga, R. B. ; Ágoston, G. ; Boros, K. ; Nagy, L. C. ; Toşa, M. I. ; Paizs, C. ; Bencze, L. C.</creatorcontrib><description>Characterization of the aromatic ammonia–lyase from Loktanella atrilutea (LaAAL) revealed reduced activity towards canonical AAL substrates: l‐Phe, l‐Tyr, and l‐His, contrasted by its pronounced efficiency towards 3,4‐dimethoxy‐l‐phenylalanine. Assessing the optimal conditions, LaAAL exhibited maximal activity at pH 9.5 in the ammonia elimination reaction route, distinct from the typical pH ranges of most PALs and TALs. Within the exploration of the ammonia source for the opposite, synthetically valuable ammonia addition reaction, the stability of LaAAL exhibited a positive correlation with the ammonia concentration, with the highest stability in 4 M ammonium carbamate of unadjusted pH of ~9.5. While the enzyme activity increased with rising temperatures yet, the highest operational stability and highest stationary conversions of LaAAL were observed at 30 °C. The substrate scope analysis highlighted the catalytic adaptability of LaAAL in the hydroamination of diverse cinnamic acids, especially of meta‐substituted and di‐/multi–substituted analogues, with structural modelling exposing steric clashes between the substrates’ ortho–substituents and catalytic site residues. LaAAL showed a predilection for ammonia elimination, while classifying as a tyrosine ammonia–lyase (TAL) among the natural AAL classes. However, its distinctive attributes, such as genomic context, unique substrate specificity and catalytic fingerprint, suggest a potential natural role beyond those of known AAL classes.
The aromatic ammonia–lyase from Loktanella atrilutea (LaAAL) displays a high activity towards 3,4‐dimethoxy trans–cinnamic acid, with a surprisingly diminished activity towards natural AAL substrates. Under the optimal reaction conditions LaAAL exhibited versatility for the transformation of various cinnamic acids. While LaAAL might be classified as a tyrosine ammonia‐lyase (TAL, E.C. 4.3.1.23), its strongly distinctive attributes argue for an elemental role in the transformation of non‐natural phenylalanines.</description><identifier>ISSN: 1439-4227</identifier><identifier>EISSN: 1439-7633</identifier><identifier>DOI: 10.1002/cbic.202400011</identifier><identifier>PMID: 38415939</identifier><language>eng</language><publisher>Germany: Wiley Subscription Services, Inc</publisher><subject>Adaptability ; Ammonia ; Ammonia - chemistry ; Ammonia - metabolism ; ammonia addition reactions ; Ammonia-Lyases - chemistry ; Ammonia-Lyases - metabolism ; Ammonium ; aromatic ammonia–lyases ; Biocatalysis ; Catalytic Domain ; Cinnamic acid ; Enzymatic activity ; Enzyme activity ; Hydrogen-Ion Concentration ; l-phenylalanines ; Models, Molecular ; pH effects ; Phenylalanine ; Stability ; Substitutes ; substrate scope ; Substrate Specificity ; Substrates ; Tyrosine</subject><ispartof>Chembiochem : a European journal of chemical biology, 2024-05, Vol.25 (9), p.e202400011-n/a</ispartof><rights>2024 Wiley-VCH GmbH</rights><rights>2024 Wiley-VCH GmbH.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c3281-93c9587ede42c7ad54f16bde4de5aee12f34daca64a2a9d217fe7078e7581ec53</cites><orcidid>0000-0002-6356-6349 ; 0000-0003-0956-9749 ; 0000-0001-8581-5003 ; 0000-0002-7403-7098 ; 0000-0002-9578-9707 ; 0000-0003-3240-706X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fcbic.202400011$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fcbic.202400011$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38415939$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tomoiaga, R. B.</creatorcontrib><creatorcontrib>Ágoston, G.</creatorcontrib><creatorcontrib>Boros, K.</creatorcontrib><creatorcontrib>Nagy, L. C.</creatorcontrib><creatorcontrib>Toşa, M. I.</creatorcontrib><creatorcontrib>Paizs, C.</creatorcontrib><creatorcontrib>Bencze, L. C.</creatorcontrib><title>The Biocatalytic Potential of Aromatic Ammonia–Lyase from Loktanella atrilutea</title><title>Chembiochem : a European journal of chemical biology</title><addtitle>Chembiochem</addtitle><description>Characterization of the aromatic ammonia–lyase from Loktanella atrilutea (LaAAL) revealed reduced activity towards canonical AAL substrates: l‐Phe, l‐Tyr, and l‐His, contrasted by its pronounced efficiency towards 3,4‐dimethoxy‐l‐phenylalanine. Assessing the optimal conditions, LaAAL exhibited maximal activity at pH 9.5 in the ammonia elimination reaction route, distinct from the typical pH ranges of most PALs and TALs. Within the exploration of the ammonia source for the opposite, synthetically valuable ammonia addition reaction, the stability of LaAAL exhibited a positive correlation with the ammonia concentration, with the highest stability in 4 M ammonium carbamate of unadjusted pH of ~9.5. While the enzyme activity increased with rising temperatures yet, the highest operational stability and highest stationary conversions of LaAAL were observed at 30 °C. The substrate scope analysis highlighted the catalytic adaptability of LaAAL in the hydroamination of diverse cinnamic acids, especially of meta‐substituted and di‐/multi–substituted analogues, with structural modelling exposing steric clashes between the substrates’ ortho–substituents and catalytic site residues. LaAAL showed a predilection for ammonia elimination, while classifying as a tyrosine ammonia–lyase (TAL) among the natural AAL classes. However, its distinctive attributes, such as genomic context, unique substrate specificity and catalytic fingerprint, suggest a potential natural role beyond those of known AAL classes.
The aromatic ammonia–lyase from Loktanella atrilutea (LaAAL) displays a high activity towards 3,4‐dimethoxy trans–cinnamic acid, with a surprisingly diminished activity towards natural AAL substrates. Under the optimal reaction conditions LaAAL exhibited versatility for the transformation of various cinnamic acids. While LaAAL might be classified as a tyrosine ammonia‐lyase (TAL, E.C. 4.3.1.23), its strongly distinctive attributes argue for an elemental role in the transformation of non‐natural phenylalanines.</description><subject>Adaptability</subject><subject>Ammonia</subject><subject>Ammonia - chemistry</subject><subject>Ammonia - metabolism</subject><subject>ammonia addition reactions</subject><subject>Ammonia-Lyases - chemistry</subject><subject>Ammonia-Lyases - metabolism</subject><subject>Ammonium</subject><subject>aromatic ammonia–lyases</subject><subject>Biocatalysis</subject><subject>Catalytic Domain</subject><subject>Cinnamic acid</subject><subject>Enzymatic activity</subject><subject>Enzyme activity</subject><subject>Hydrogen-Ion Concentration</subject><subject>l-phenylalanines</subject><subject>Models, Molecular</subject><subject>pH effects</subject><subject>Phenylalanine</subject><subject>Stability</subject><subject>Substitutes</subject><subject>substrate scope</subject><subject>Substrate Specificity</subject><subject>Substrates</subject><subject>Tyrosine</subject><issn>1439-4227</issn><issn>1439-7633</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkMtKw0AUhgdRrLetSwm4cdM6t2Qyy7Z4KRR0UdfD6eQEpyaZmkmQ7nwH39AnMaFVwY2rc_vOz89PyDmjI0Ypv7ZLZ0ecckkpZWyPHDEp9FAlQuzvesm5GpDjEFYdohPBDslApJLFWugj8rh4xmjivIUGik3jbPToG6waB0Xk82hc-xL67bgsfeXg8_1jvoGAUd4dorl_aaDCooAImtoVbYNwSg5yKAKe7eoJebq9WUzvh_OHu9l0PB9awVM21MLqOFWYoeRWQRbLnCXLbsowBkTGcyEzsJBI4KAzzlSOiqoUVZwytLE4IVdb3XXtX1sMjSldsL2XCn0bDNeCa0l5Ijv08g-68m1dde6MoFIrIWLVU6MtZWsfQo25WdeuhHpjGDV91qbP2vxk3T1c7GTbZYnZD_4dbgfoLfDmCtz8I2emk9n0V_wLnkGLpg</recordid><startdate>20240502</startdate><enddate>20240502</enddate><creator>Tomoiaga, R. B.</creator><creator>Ágoston, G.</creator><creator>Boros, K.</creator><creator>Nagy, L. C.</creator><creator>Toşa, M. I.</creator><creator>Paizs, C.</creator><creator>Bencze, L. C.</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-6356-6349</orcidid><orcidid>https://orcid.org/0000-0003-0956-9749</orcidid><orcidid>https://orcid.org/0000-0001-8581-5003</orcidid><orcidid>https://orcid.org/0000-0002-7403-7098</orcidid><orcidid>https://orcid.org/0000-0002-9578-9707</orcidid><orcidid>https://orcid.org/0000-0003-3240-706X</orcidid></search><sort><creationdate>20240502</creationdate><title>The Biocatalytic Potential of Aromatic Ammonia–Lyase from Loktanella atrilutea</title><author>Tomoiaga, R. B. ; Ágoston, G. ; Boros, K. ; Nagy, L. C. ; Toşa, M. I. ; Paizs, C. ; Bencze, L. C.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3281-93c9587ede42c7ad54f16bde4de5aee12f34daca64a2a9d217fe7078e7581ec53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Adaptability</topic><topic>Ammonia</topic><topic>Ammonia - chemistry</topic><topic>Ammonia - metabolism</topic><topic>ammonia addition reactions</topic><topic>Ammonia-Lyases - chemistry</topic><topic>Ammonia-Lyases - metabolism</topic><topic>Ammonium</topic><topic>aromatic ammonia–lyases</topic><topic>Biocatalysis</topic><topic>Catalytic Domain</topic><topic>Cinnamic acid</topic><topic>Enzymatic activity</topic><topic>Enzyme activity</topic><topic>Hydrogen-Ion Concentration</topic><topic>l-phenylalanines</topic><topic>Models, Molecular</topic><topic>pH effects</topic><topic>Phenylalanine</topic><topic>Stability</topic><topic>Substitutes</topic><topic>substrate scope</topic><topic>Substrate Specificity</topic><topic>Substrates</topic><topic>Tyrosine</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tomoiaga, R. B.</creatorcontrib><creatorcontrib>Ágoston, G.</creatorcontrib><creatorcontrib>Boros, K.</creatorcontrib><creatorcontrib>Nagy, L. C.</creatorcontrib><creatorcontrib>Toşa, M. I.</creatorcontrib><creatorcontrib>Paizs, C.</creatorcontrib><creatorcontrib>Bencze, L. C.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Chembiochem : a European journal of chemical biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tomoiaga, R. B.</au><au>Ágoston, G.</au><au>Boros, K.</au><au>Nagy, L. C.</au><au>Toşa, M. I.</au><au>Paizs, C.</au><au>Bencze, L. C.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The Biocatalytic Potential of Aromatic Ammonia–Lyase from Loktanella atrilutea</atitle><jtitle>Chembiochem : a European journal of chemical biology</jtitle><addtitle>Chembiochem</addtitle><date>2024-05-02</date><risdate>2024</risdate><volume>25</volume><issue>9</issue><spage>e202400011</spage><epage>n/a</epage><pages>e202400011-n/a</pages><issn>1439-4227</issn><eissn>1439-7633</eissn><abstract>Characterization of the aromatic ammonia–lyase from Loktanella atrilutea (LaAAL) revealed reduced activity towards canonical AAL substrates: l‐Phe, l‐Tyr, and l‐His, contrasted by its pronounced efficiency towards 3,4‐dimethoxy‐l‐phenylalanine. Assessing the optimal conditions, LaAAL exhibited maximal activity at pH 9.5 in the ammonia elimination reaction route, distinct from the typical pH ranges of most PALs and TALs. Within the exploration of the ammonia source for the opposite, synthetically valuable ammonia addition reaction, the stability of LaAAL exhibited a positive correlation with the ammonia concentration, with the highest stability in 4 M ammonium carbamate of unadjusted pH of ~9.5. While the enzyme activity increased with rising temperatures yet, the highest operational stability and highest stationary conversions of LaAAL were observed at 30 °C. The substrate scope analysis highlighted the catalytic adaptability of LaAAL in the hydroamination of diverse cinnamic acids, especially of meta‐substituted and di‐/multi–substituted analogues, with structural modelling exposing steric clashes between the substrates’ ortho–substituents and catalytic site residues. LaAAL showed a predilection for ammonia elimination, while classifying as a tyrosine ammonia–lyase (TAL) among the natural AAL classes. However, its distinctive attributes, such as genomic context, unique substrate specificity and catalytic fingerprint, suggest a potential natural role beyond those of known AAL classes.
The aromatic ammonia–lyase from Loktanella atrilutea (LaAAL) displays a high activity towards 3,4‐dimethoxy trans–cinnamic acid, with a surprisingly diminished activity towards natural AAL substrates. Under the optimal reaction conditions LaAAL exhibited versatility for the transformation of various cinnamic acids. While LaAAL might be classified as a tyrosine ammonia‐lyase (TAL, E.C. 4.3.1.23), its strongly distinctive attributes argue for an elemental role in the transformation of non‐natural phenylalanines.</abstract><cop>Germany</cop><pub>Wiley Subscription Services, Inc</pub><pmid>38415939</pmid><doi>10.1002/cbic.202400011</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-6356-6349</orcidid><orcidid>https://orcid.org/0000-0003-0956-9749</orcidid><orcidid>https://orcid.org/0000-0001-8581-5003</orcidid><orcidid>https://orcid.org/0000-0002-7403-7098</orcidid><orcidid>https://orcid.org/0000-0002-9578-9707</orcidid><orcidid>https://orcid.org/0000-0003-3240-706X</orcidid></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1439-4227 |
ispartof | Chembiochem : a European journal of chemical biology, 2024-05, Vol.25 (9), p.e202400011-n/a |
issn | 1439-4227 1439-7633 |
language | eng |
recordid | cdi_proquest_miscellaneous_2932940264 |
source | MEDLINE; Wiley Online Library Journals Frontfile Complete |
subjects | Adaptability Ammonia Ammonia - chemistry Ammonia - metabolism ammonia addition reactions Ammonia-Lyases - chemistry Ammonia-Lyases - metabolism Ammonium aromatic ammonia–lyases Biocatalysis Catalytic Domain Cinnamic acid Enzymatic activity Enzyme activity Hydrogen-Ion Concentration l-phenylalanines Models, Molecular pH effects Phenylalanine Stability Substitutes substrate scope Substrate Specificity Substrates Tyrosine |
title | The Biocatalytic Potential of Aromatic Ammonia–Lyase from Loktanella atrilutea |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-07T22%3A11%3A36IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20Biocatalytic%20Potential%20of%20Aromatic%20Ammonia%E2%80%93Lyase%20from%20Loktanella%20atrilutea&rft.jtitle=Chembiochem%20:%20a%20European%20journal%20of%20chemical%20biology&rft.au=Tomoiaga,%20R.%20B.&rft.date=2024-05-02&rft.volume=25&rft.issue=9&rft.spage=e202400011&rft.epage=n/a&rft.pages=e202400011-n/a&rft.issn=1439-4227&rft.eissn=1439-7633&rft_id=info:doi/10.1002/cbic.202400011&rft_dat=%3Cproquest_cross%3E2932940264%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=3049733574&rft_id=info:pmid/38415939&rfr_iscdi=true |