Simultaneous utilization of glucose and xylose by metabolically engineered Pseudomonas putida for the production of 3-hydroxypropionic acid
[Display omitted] •A P. putida strain was engineered to utilize xylose via the Weimberg pathway.•An adaptive laboratory-evolved strain showed similar growth on both glucose and xylose.•Identified key mutations responsible for higher growth on xylose through Weimberg pathway.•A reverse-engineered str...
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creator | Tiwari, Rameshwar Sathesh-Prabu, Chandran Kim, Yuchan Kuk Lee, Sung |
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•A P. putida strain was engineered to utilize xylose via the Weimberg pathway.•An adaptive laboratory-evolved strain showed similar growth on both glucose and xylose.•Identified key mutations responsible for higher growth on xylose through Weimberg pathway.•A reverse-engineered strain capable of co-utilization of glucose and xylose was constructed.•The engineered P. putida produced 29 g/L of 3HP from glucose and xylose in fed-batch fermentation.
Pseudomonas putida,a robust candidate for lignocellulosicbiomass-based biorefineries, encounters challenges in metabolizing xylose. In this study, Weimberg pathway was introduced intoP. putidaEM42 under a xylose-inducible promoter, resulting in slow cell growth (0.05 h−1) on xylose.Through adaptive laboratory evolution, an evolved strain exhibited highly enhanced growth on xylose (0.36 h−1), comparable to that on glucose (0.39 h−1). Whole genome sequencing identified four mutations, with two key mutations located inPP3380andPP2219. Reverse-engineered strain 8EM42_Xyl, harboring these two mutations, showed enhanced growth on xylose but co-utilizing glucose and xylose at a rate of 0.3 g/L/h. Furthermore, 8EM42_Xyl was employed for 3-hydroxypropionic acid (3HP) production from glucose and xylose by expressing malonyl-CoA reductase and acetyl-CoA carboxylase, yielding 29 g/L in fed-batch fermentation. Moreover, the engineered strain exhibited promising performance in 3HP production from empty palm fruit bunch hydrolysate, demonstrating its potential as a promising cell factory forbiorefineries. |
doi_str_mv | 10.1016/j.biortech.2024.130389 |
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•A P. putida strain was engineered to utilize xylose via the Weimberg pathway.•An adaptive laboratory-evolved strain showed similar growth on both glucose and xylose.•Identified key mutations responsible for higher growth on xylose through Weimberg pathway.•A reverse-engineered strain capable of co-utilization of glucose and xylose was constructed.•The engineered P. putida produced 29 g/L of 3HP from glucose and xylose in fed-batch fermentation.
Pseudomonas putida,a robust candidate for lignocellulosicbiomass-based biorefineries, encounters challenges in metabolizing xylose. In this study, Weimberg pathway was introduced intoP. putidaEM42 under a xylose-inducible promoter, resulting in slow cell growth (0.05 h−1) on xylose.Through adaptive laboratory evolution, an evolved strain exhibited highly enhanced growth on xylose (0.36 h−1), comparable to that on glucose (0.39 h−1). Whole genome sequencing identified four mutations, with two key mutations located inPP3380andPP2219. Reverse-engineered strain 8EM42_Xyl, harboring these two mutations, showed enhanced growth on xylose but co-utilizing glucose and xylose at a rate of 0.3 g/L/h. Furthermore, 8EM42_Xyl was employed for 3-hydroxypropionic acid (3HP) production from glucose and xylose by expressing malonyl-CoA reductase and acetyl-CoA carboxylase, yielding 29 g/L in fed-batch fermentation. Moreover, the engineered strain exhibited promising performance in 3HP production from empty palm fruit bunch hydrolysate, demonstrating its potential as a promising cell factory forbiorefineries.</description><identifier>ISSN: 0960-8524</identifier><identifier>EISSN: 1873-2976</identifier><identifier>DOI: 10.1016/j.biortech.2024.130389</identifier><identifier>PMID: 38295962</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>3-hydroxypropionic acid ; Adaptive laboratory evolution ; Pseudomonas putida ; Weimberg pathway ; Xylose metabolism</subject><ispartof>Bioresource technology, 2024-03, Vol.395, p.130389-130389, Article 130389</ispartof><rights>2024 Elsevier Ltd</rights><rights>Copyright © 2024 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c315t-1e3b46600cecd3a1ec5ff4a276c06be50ed4fedff7a6750bdfc89c7d39fa342a3</cites><orcidid>0009-0009-2487-0039 ; 0000-0001-9564-6303</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.biortech.2024.130389$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38295962$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tiwari, Rameshwar</creatorcontrib><creatorcontrib>Sathesh-Prabu, Chandran</creatorcontrib><creatorcontrib>Kim, Yuchan</creatorcontrib><creatorcontrib>Kuk Lee, Sung</creatorcontrib><title>Simultaneous utilization of glucose and xylose by metabolically engineered Pseudomonas putida for the production of 3-hydroxypropionic acid</title><title>Bioresource technology</title><addtitle>Bioresour Technol</addtitle><description>[Display omitted]
•A P. putida strain was engineered to utilize xylose via the Weimberg pathway.•An adaptive laboratory-evolved strain showed similar growth on both glucose and xylose.•Identified key mutations responsible for higher growth on xylose through Weimberg pathway.•A reverse-engineered strain capable of co-utilization of glucose and xylose was constructed.•The engineered P. putida produced 29 g/L of 3HP from glucose and xylose in fed-batch fermentation.
Pseudomonas putida,a robust candidate for lignocellulosicbiomass-based biorefineries, encounters challenges in metabolizing xylose. In this study, Weimberg pathway was introduced intoP. putidaEM42 under a xylose-inducible promoter, resulting in slow cell growth (0.05 h−1) on xylose.Through adaptive laboratory evolution, an evolved strain exhibited highly enhanced growth on xylose (0.36 h−1), comparable to that on glucose (0.39 h−1). Whole genome sequencing identified four mutations, with two key mutations located inPP3380andPP2219. Reverse-engineered strain 8EM42_Xyl, harboring these two mutations, showed enhanced growth on xylose but co-utilizing glucose and xylose at a rate of 0.3 g/L/h. Furthermore, 8EM42_Xyl was employed for 3-hydroxypropionic acid (3HP) production from glucose and xylose by expressing malonyl-CoA reductase and acetyl-CoA carboxylase, yielding 29 g/L in fed-batch fermentation. Moreover, the engineered strain exhibited promising performance in 3HP production from empty palm fruit bunch hydrolysate, demonstrating its potential as a promising cell factory forbiorefineries.</description><subject>3-hydroxypropionic acid</subject><subject>Adaptive laboratory evolution</subject><subject>Pseudomonas putida</subject><subject>Weimberg pathway</subject><subject>Xylose metabolism</subject><issn>0960-8524</issn><issn>1873-2976</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNqFUcmO1DAQtRCIaQZ-YeQjlzReEie-gUZs0kggAWfLKZen3XLixk7QhF_gp0kr01w5Van0FtV7hNxwtueMqzfHfR9SnhAOe8FEveeSyU4_ITvetbISulVPyY5pxaquEfUVeVHKkTEmeSuekyvZCd1oJXbkz7cwzHGyI6a50HkKMfy2U0gjTZ7exxlSQWpHRx-WeF77hQ442T7FADbGheJ4H0bEjI5-LTi7NKTRFnpapZylPmU6HZCecnIzXHRldVhcTg_Lej6ttwDUQnAvyTNvY8FXj_Oa_Pjw_vvtp-ruy8fPt-_uKpC8mSqOsq-VYgwQnLQcofG-tqJVwFSPDUNXe3Tet1a1Deudh05D66T2VtbCymvyetNd7X_OWCYzhAIY45aCEVp0otZatytUbVDIqZSM3pxyGGxeDGfmXIQ5mksR5lyE2YpYiTePHnM_oPtHuyS_At5uAFw__RUwmwIBR0AXMsJkXAr_8_gLSeuipQ</recordid><startdate>202403</startdate><enddate>202403</enddate><creator>Tiwari, Rameshwar</creator><creator>Sathesh-Prabu, Chandran</creator><creator>Kim, Yuchan</creator><creator>Kuk Lee, Sung</creator><general>Elsevier Ltd</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0009-0009-2487-0039</orcidid><orcidid>https://orcid.org/0000-0001-9564-6303</orcidid></search><sort><creationdate>202403</creationdate><title>Simultaneous utilization of glucose and xylose by metabolically engineered Pseudomonas putida for the production of 3-hydroxypropionic acid</title><author>Tiwari, Rameshwar ; Sathesh-Prabu, Chandran ; Kim, Yuchan ; Kuk Lee, Sung</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c315t-1e3b46600cecd3a1ec5ff4a276c06be50ed4fedff7a6750bdfc89c7d39fa342a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>3-hydroxypropionic acid</topic><topic>Adaptive laboratory evolution</topic><topic>Pseudomonas putida</topic><topic>Weimberg pathway</topic><topic>Xylose metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tiwari, Rameshwar</creatorcontrib><creatorcontrib>Sathesh-Prabu, Chandran</creatorcontrib><creatorcontrib>Kim, Yuchan</creatorcontrib><creatorcontrib>Kuk Lee, Sung</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Bioresource technology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tiwari, Rameshwar</au><au>Sathesh-Prabu, Chandran</au><au>Kim, Yuchan</au><au>Kuk Lee, Sung</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Simultaneous utilization of glucose and xylose by metabolically engineered Pseudomonas putida for the production of 3-hydroxypropionic acid</atitle><jtitle>Bioresource technology</jtitle><addtitle>Bioresour Technol</addtitle><date>2024-03</date><risdate>2024</risdate><volume>395</volume><spage>130389</spage><epage>130389</epage><pages>130389-130389</pages><artnum>130389</artnum><issn>0960-8524</issn><eissn>1873-2976</eissn><abstract>[Display omitted]
•A P. putida strain was engineered to utilize xylose via the Weimberg pathway.•An adaptive laboratory-evolved strain showed similar growth on both glucose and xylose.•Identified key mutations responsible for higher growth on xylose through Weimberg pathway.•A reverse-engineered strain capable of co-utilization of glucose and xylose was constructed.•The engineered P. putida produced 29 g/L of 3HP from glucose and xylose in fed-batch fermentation.
Pseudomonas putida,a robust candidate for lignocellulosicbiomass-based biorefineries, encounters challenges in metabolizing xylose. In this study, Weimberg pathway was introduced intoP. putidaEM42 under a xylose-inducible promoter, resulting in slow cell growth (0.05 h−1) on xylose.Through adaptive laboratory evolution, an evolved strain exhibited highly enhanced growth on xylose (0.36 h−1), comparable to that on glucose (0.39 h−1). Whole genome sequencing identified four mutations, with two key mutations located inPP3380andPP2219. Reverse-engineered strain 8EM42_Xyl, harboring these two mutations, showed enhanced growth on xylose but co-utilizing glucose and xylose at a rate of 0.3 g/L/h. Furthermore, 8EM42_Xyl was employed for 3-hydroxypropionic acid (3HP) production from glucose and xylose by expressing malonyl-CoA reductase and acetyl-CoA carboxylase, yielding 29 g/L in fed-batch fermentation. Moreover, the engineered strain exhibited promising performance in 3HP production from empty palm fruit bunch hydrolysate, demonstrating its potential as a promising cell factory forbiorefineries.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>38295962</pmid><doi>10.1016/j.biortech.2024.130389</doi><tpages>1</tpages><orcidid>https://orcid.org/0009-0009-2487-0039</orcidid><orcidid>https://orcid.org/0000-0001-9564-6303</orcidid></addata></record> |
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subjects | 3-hydroxypropionic acid Adaptive laboratory evolution Pseudomonas putida Weimberg pathway Xylose metabolism |
title | Simultaneous utilization of glucose and xylose by metabolically engineered Pseudomonas putida for the production of 3-hydroxypropionic acid |
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