Quantitative color analysis of burned bone to predict DNA quantity, quality, and genotyping success
Badly burned skeletal remains are commonly submitted to forensic laboratories for victim identification via DNA analysis methods. Burned skeletal remains present many challenges for DNA analysis as they can contain low amounts of DNA which can also be damaged and degraded, resulting in partial or no...
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Veröffentlicht in: | Journal of forensic sciences 2024-05, Vol.69 (3), p.836-846 |
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description | Badly burned skeletal remains are commonly submitted to forensic laboratories for victim identification via DNA analysis methods. Burned skeletal remains present many challenges for DNA analysis as they can contain low amounts of DNA which can also be damaged and degraded, resulting in partial or no STR profiles. Therefore, a simple, but effective screening method that identifies which samples may provide the most successful STR or mtDNA typing results for identification would enable forensic laboratories to save time, money, and resources. One metric that can be used and a screening method is the color of burned bone, as bone color changes with exposure to fire as temperature and length of exposure increase. This research developed a quantitative screening method based on the surface color of burned bone. The different visual bone colors (light brown, dark brown, black, gray, and white) were quantified using the Commission on Illumination L*a*b color space. These values were then compared to DNA yield, STR, and mtDNA profile completeness to identify whether the L*a*b values can predict genotyping success. A Bayesian network was constructed to determine the probability of STR typing success, given a set of L*a*b values. Results demonstrated that samples with an a* value greater than or equal to one and b* value greater than eight (light brown and dark brown burned samples) were the most predictive of STR typing success and mtDNA typing success. A decision tree for processing burned bones was constructed based on the color value thresholds. |
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Burned skeletal remains present many challenges for DNA analysis as they can contain low amounts of DNA which can also be damaged and degraded, resulting in partial or no STR profiles. Therefore, a simple, but effective screening method that identifies which samples may provide the most successful STR or mtDNA typing results for identification would enable forensic laboratories to save time, money, and resources. One metric that can be used and a screening method is the color of burned bone, as bone color changes with exposure to fire as temperature and length of exposure increase. This research developed a quantitative screening method based on the surface color of burned bone. The different visual bone colors (light brown, dark brown, black, gray, and white) were quantified using the Commission on Illumination L*a*b color space. These values were then compared to DNA yield, STR, and mtDNA profile completeness to identify whether the L*a*b values can predict genotyping success. A Bayesian network was constructed to determine the probability of STR typing success, given a set of L*a*b values. Results demonstrated that samples with an a* value greater than or equal to one and b* value greater than eight (light brown and dark brown burned samples) were the most predictive of STR typing success and mtDNA typing success. A decision tree for processing burned bones was constructed based on the color value thresholds.</description><identifier>ISSN: 0022-1198</identifier><identifier>EISSN: 1556-4029</identifier><identifier>DOI: 10.1111/1556-4029.15490</identifier><identifier>PMID: 38366747</identifier><language>eng</language><publisher>United States: Wiley Subscription Services, Inc</publisher><subject>Bayes Theorem ; Bayesian analysis ; Bone and Bones - chemistry ; bone color ; Bones ; burned bones ; Burns - pathology ; Color ; Decision trees ; DNA ; DNA Fingerprinting - methods ; DNA, Mitochondrial - genetics ; Fire exposure ; Fires ; Forensic Anthropology - methods ; forensic biology ; Genotype ; HID ; human identification ; Human remains ; Humans ; Laboratories ; Microsatellite Repeats ; Mitochondrial DNA ; mtDNA ; Polymerase Chain Reaction ; Screening ; STR typing ; Success</subject><ispartof>Journal of forensic sciences, 2024-05, Vol.69 (3), p.836-846</ispartof><rights>2024 American Academy of Forensic Sciences.</rights><rights>2024 American Academy of Forensic Sciences</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c3250-3c9b2cd64eee34d1f931b2a18f07d1365942f33aaed1e9c25c4ccd9d4062369c3</cites><orcidid>0000-0002-2581-8963 ; 0000-0002-3092-4605</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2F1556-4029.15490$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2F1556-4029.15490$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38366747$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Macias, Eric</creatorcontrib><creatorcontrib>Hartline, Kendall</creatorcontrib><creatorcontrib>Buzzini, Patrick</creatorcontrib><creatorcontrib>Hughes, Sheree</creatorcontrib><title>Quantitative color analysis of burned bone to predict DNA quantity, quality, and genotyping success</title><title>Journal of forensic sciences</title><addtitle>J Forensic Sci</addtitle><description>Badly burned skeletal remains are commonly submitted to forensic laboratories for victim identification via DNA analysis methods. Burned skeletal remains present many challenges for DNA analysis as they can contain low amounts of DNA which can also be damaged and degraded, resulting in partial or no STR profiles. Therefore, a simple, but effective screening method that identifies which samples may provide the most successful STR or mtDNA typing results for identification would enable forensic laboratories to save time, money, and resources. One metric that can be used and a screening method is the color of burned bone, as bone color changes with exposure to fire as temperature and length of exposure increase. This research developed a quantitative screening method based on the surface color of burned bone. The different visual bone colors (light brown, dark brown, black, gray, and white) were quantified using the Commission on Illumination L*a*b color space. These values were then compared to DNA yield, STR, and mtDNA profile completeness to identify whether the L*a*b values can predict genotyping success. A Bayesian network was constructed to determine the probability of STR typing success, given a set of L*a*b values. Results demonstrated that samples with an a* value greater than or equal to one and b* value greater than eight (light brown and dark brown burned samples) were the most predictive of STR typing success and mtDNA typing success. A decision tree for processing burned bones was constructed based on the color value thresholds.</description><subject>Bayes Theorem</subject><subject>Bayesian analysis</subject><subject>Bone and Bones - chemistry</subject><subject>bone color</subject><subject>Bones</subject><subject>burned bones</subject><subject>Burns - pathology</subject><subject>Color</subject><subject>Decision trees</subject><subject>DNA</subject><subject>DNA Fingerprinting - methods</subject><subject>DNA, Mitochondrial - genetics</subject><subject>Fire exposure</subject><subject>Fires</subject><subject>Forensic Anthropology - methods</subject><subject>forensic biology</subject><subject>Genotype</subject><subject>HID</subject><subject>human identification</subject><subject>Human remains</subject><subject>Humans</subject><subject>Laboratories</subject><subject>Microsatellite Repeats</subject><subject>Mitochondrial DNA</subject><subject>mtDNA</subject><subject>Polymerase Chain Reaction</subject><subject>Screening</subject><subject>STR typing</subject><subject>Success</subject><issn>0022-1198</issn><issn>1556-4029</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkD1PwzAQhi0EglKY2ZAlFgYC_m48okL5UEWFBLPl2BcUlMYlTkD596QNdGDhljtZz706PwidUHJJ-7qiUqpEEKYvqRSa7KDR9mUXjQhhLKFUpwfoMMZ3Qoiiiu6jA55ypSZiMkLuubVVUzS2KT4Bu1CGGtvKll0sIg45ztq6Ao-zUAFuAl7V4AvX4Juna_wxbHYX66ncDLby-A2q0HSronrDsXUOYjxCe7ktIxz_9DF6nd2-TO-T-eLuYXo9TxxnkiTc6Yw5rwQAcOFprjnNmKVpTiaeciW1YDnn1oKnoB2TTjjntRdEMa6042N0PuSu6vDRQmzMsogOytJWENpomGYpE0ynrEfP_qDvof9pf53hREgileCip64GytUhxhpys6qLpa07Q4lZ-zdr22Zt22z89xunP7lttgS_5X-F94AcgK-ihO6_PPM4WwzB32M7jyw</recordid><startdate>202405</startdate><enddate>202405</enddate><creator>Macias, Eric</creator><creator>Hartline, Kendall</creator><creator>Buzzini, Patrick</creator><creator>Hughes, Sheree</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>K7.</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-2581-8963</orcidid><orcidid>https://orcid.org/0000-0002-3092-4605</orcidid></search><sort><creationdate>202405</creationdate><title>Quantitative color analysis of burned bone to predict DNA quantity, quality, and genotyping success</title><author>Macias, Eric ; Hartline, Kendall ; Buzzini, Patrick ; Hughes, Sheree</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3250-3c9b2cd64eee34d1f931b2a18f07d1365942f33aaed1e9c25c4ccd9d4062369c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Bayes Theorem</topic><topic>Bayesian analysis</topic><topic>Bone and Bones - chemistry</topic><topic>bone color</topic><topic>Bones</topic><topic>burned bones</topic><topic>Burns - pathology</topic><topic>Color</topic><topic>Decision trees</topic><topic>DNA</topic><topic>DNA Fingerprinting - methods</topic><topic>DNA, Mitochondrial - genetics</topic><topic>Fire exposure</topic><topic>Fires</topic><topic>Forensic Anthropology - methods</topic><topic>forensic biology</topic><topic>Genotype</topic><topic>HID</topic><topic>human identification</topic><topic>Human remains</topic><topic>Humans</topic><topic>Laboratories</topic><topic>Microsatellite Repeats</topic><topic>Mitochondrial DNA</topic><topic>mtDNA</topic><topic>Polymerase Chain Reaction</topic><topic>Screening</topic><topic>STR typing</topic><topic>Success</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Macias, Eric</creatorcontrib><creatorcontrib>Hartline, Kendall</creatorcontrib><creatorcontrib>Buzzini, Patrick</creatorcontrib><creatorcontrib>Hughes, Sheree</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Criminal Justice (Alumni)</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of forensic sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Macias, Eric</au><au>Hartline, Kendall</au><au>Buzzini, Patrick</au><au>Hughes, Sheree</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Quantitative color analysis of burned bone to predict DNA quantity, quality, and genotyping success</atitle><jtitle>Journal of forensic sciences</jtitle><addtitle>J Forensic Sci</addtitle><date>2024-05</date><risdate>2024</risdate><volume>69</volume><issue>3</issue><spage>836</spage><epage>846</epage><pages>836-846</pages><issn>0022-1198</issn><eissn>1556-4029</eissn><abstract>Badly burned skeletal remains are commonly submitted to forensic laboratories for victim identification via DNA analysis methods. Burned skeletal remains present many challenges for DNA analysis as they can contain low amounts of DNA which can also be damaged and degraded, resulting in partial or no STR profiles. Therefore, a simple, but effective screening method that identifies which samples may provide the most successful STR or mtDNA typing results for identification would enable forensic laboratories to save time, money, and resources. One metric that can be used and a screening method is the color of burned bone, as bone color changes with exposure to fire as temperature and length of exposure increase. This research developed a quantitative screening method based on the surface color of burned bone. The different visual bone colors (light brown, dark brown, black, gray, and white) were quantified using the Commission on Illumination L*a*b color space. These values were then compared to DNA yield, STR, and mtDNA profile completeness to identify whether the L*a*b values can predict genotyping success. A Bayesian network was constructed to determine the probability of STR typing success, given a set of L*a*b values. Results demonstrated that samples with an a* value greater than or equal to one and b* value greater than eight (light brown and dark brown burned samples) were the most predictive of STR typing success and mtDNA typing success. A decision tree for processing burned bones was constructed based on the color value thresholds.</abstract><cop>United States</cop><pub>Wiley Subscription Services, Inc</pub><pmid>38366747</pmid><doi>10.1111/1556-4029.15490</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-2581-8963</orcidid><orcidid>https://orcid.org/0000-0002-3092-4605</orcidid></addata></record> |
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subjects | Bayes Theorem Bayesian analysis Bone and Bones - chemistry bone color Bones burned bones Burns - pathology Color Decision trees DNA DNA Fingerprinting - methods DNA, Mitochondrial - genetics Fire exposure Fires Forensic Anthropology - methods forensic biology Genotype HID human identification Human remains Humans Laboratories Microsatellite Repeats Mitochondrial DNA mtDNA Polymerase Chain Reaction Screening STR typing Success |
title | Quantitative color analysis of burned bone to predict DNA quantity, quality, and genotyping success |
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