Odorant-Binding and Chemosensory Proteins in Fig Wasps: Evolutionary Insights From Comparative Studies
Fig wasps (Agaonidae; Hymenoptera) are the only pollinating insects of fig trees ( Ficus ; Moraceae), forming the most closely and highly specific mutualism with the host. We used transcriptome sequences of 25 fig wasps from six genera to explore the evolution of key molecular components of fig wasp...
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Veröffentlicht in: | Journal of molecular evolution 2024-02, Vol.92 (1), p.42-60 |
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creator | Yu, Hui Nong, Xiaojue Huang, Weicheng Bhanumas, Chantarasuwan Deng, Xiaoxia Ding, Yamei Liu, Wanzhen |
description | Fig wasps (Agaonidae; Hymenoptera) are the only pollinating insects of fig trees (
Ficus
; Moraceae), forming the most closely and highly specific mutualism with the host. We used transcriptome sequences of 25 fig wasps from six genera to explore the evolution of key molecular components of fig wasp chemosensory genes: odorant-binding proteins (OBPs) and chemosensory proteins (CSPs). We identified a total 321 OBPs and 240 CSPs, with each species recording from 6 to 27 OBP genes and 6–19 CSP genes. 318 OBP genes are clustered into 17 orthologous groups and can be divided into two groups: PBP sensitive to pheromone and GOBP sensitive to general odor molecules, such as alcohols, esters, acids, ketones, and terpenoids. 240 CSP genes are clustered into 12 orthologous groups, which can be divided into three major groups and have functions, such as olfactory, tissue formation and/or regeneration, developmental, and some specific and unknown function. The gene sequences of most orthologous groups vary greatly among species and are consistent with the phylogenetic relationships between fig wasps. Strong purifying selection of both OBP and CSP genes was detected, as shown by low
ω
values. A positive selection was detected in one locus in CSP1. In conclusion, the evolution of chemosensory proteins OBPs and CSPs in fig wasps is relatively conservative, and they play an indispensable role in the life activities of fig wasps. Our results provide a starting point for understanding the molecular basis of the chemosensory systems of fig wasps. |
doi_str_mv | 10.1007/s00239-023-10152-x |
format | Article |
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Ficus
; Moraceae), forming the most closely and highly specific mutualism with the host. We used transcriptome sequences of 25 fig wasps from six genera to explore the evolution of key molecular components of fig wasp chemosensory genes: odorant-binding proteins (OBPs) and chemosensory proteins (CSPs). We identified a total 321 OBPs and 240 CSPs, with each species recording from 6 to 27 OBP genes and 6–19 CSP genes. 318 OBP genes are clustered into 17 orthologous groups and can be divided into two groups: PBP sensitive to pheromone and GOBP sensitive to general odor molecules, such as alcohols, esters, acids, ketones, and terpenoids. 240 CSP genes are clustered into 12 orthologous groups, which can be divided into three major groups and have functions, such as olfactory, tissue formation and/or regeneration, developmental, and some specific and unknown function. The gene sequences of most orthologous groups vary greatly among species and are consistent with the phylogenetic relationships between fig wasps. Strong purifying selection of both OBP and CSP genes was detected, as shown by low
ω
values. A positive selection was detected in one locus in CSP1. In conclusion, the evolution of chemosensory proteins OBPs and CSPs in fig wasps is relatively conservative, and they play an indispensable role in the life activities of fig wasps. Our results provide a starting point for understanding the molecular basis of the chemosensory systems of fig wasps.</description><identifier>ISSN: 0022-2844</identifier><identifier>EISSN: 1432-1432</identifier><identifier>DOI: 10.1007/s00239-023-10152-x</identifier><identifier>PMID: 38280051</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Alcohols ; Animal Genetics and Genomics ; Animals ; Binding ; Biomedical and Life Sciences ; Cell Biology ; Chemoreception ; Comparative studies ; Esters ; Evolution ; Evolutionary Biology ; Evolutionary genetics ; Ficus - genetics ; Fruit trees ; Gene sequencing ; Genes ; Insects ; Ketones ; Life Sciences ; Microbiology ; Mutualism ; Odorant-binding protein ; Odorants ; Original Article ; Phylogeny ; Plant Genetics and Genomics ; Plant Sciences ; Positive selection ; Proteins ; Symbiosis ; Terpenes ; Transcriptomes ; Wasps - genetics</subject><ispartof>Journal of molecular evolution, 2024-02, Vol.92 (1), p.42-60</ispartof><rights>The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c326t-1c7203acc730a9615020eed92169231a68846685ab55f97cea706898417c3add3</cites><orcidid>0000-0003-0074-9153</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00239-023-10152-x$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00239-023-10152-x$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27923,27924,41487,42556,51318</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38280051$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yu, Hui</creatorcontrib><creatorcontrib>Nong, Xiaojue</creatorcontrib><creatorcontrib>Huang, Weicheng</creatorcontrib><creatorcontrib>Bhanumas, Chantarasuwan</creatorcontrib><creatorcontrib>Deng, Xiaoxia</creatorcontrib><creatorcontrib>Ding, Yamei</creatorcontrib><creatorcontrib>Liu, Wanzhen</creatorcontrib><title>Odorant-Binding and Chemosensory Proteins in Fig Wasps: Evolutionary Insights From Comparative Studies</title><title>Journal of molecular evolution</title><addtitle>J Mol Evol</addtitle><addtitle>J Mol Evol</addtitle><description>Fig wasps (Agaonidae; Hymenoptera) are the only pollinating insects of fig trees (
Ficus
; Moraceae), forming the most closely and highly specific mutualism with the host. We used transcriptome sequences of 25 fig wasps from six genera to explore the evolution of key molecular components of fig wasp chemosensory genes: odorant-binding proteins (OBPs) and chemosensory proteins (CSPs). We identified a total 321 OBPs and 240 CSPs, with each species recording from 6 to 27 OBP genes and 6–19 CSP genes. 318 OBP genes are clustered into 17 orthologous groups and can be divided into two groups: PBP sensitive to pheromone and GOBP sensitive to general odor molecules, such as alcohols, esters, acids, ketones, and terpenoids. 240 CSP genes are clustered into 12 orthologous groups, which can be divided into three major groups and have functions, such as olfactory, tissue formation and/or regeneration, developmental, and some specific and unknown function. The gene sequences of most orthologous groups vary greatly among species and are consistent with the phylogenetic relationships between fig wasps. Strong purifying selection of both OBP and CSP genes was detected, as shown by low
ω
values. A positive selection was detected in one locus in CSP1. In conclusion, the evolution of chemosensory proteins OBPs and CSPs in fig wasps is relatively conservative, and they play an indispensable role in the life activities of fig wasps. Our results provide a starting point for understanding the molecular basis of the chemosensory systems of fig wasps.</description><subject>Alcohols</subject><subject>Animal Genetics and Genomics</subject><subject>Animals</subject><subject>Binding</subject><subject>Biomedical and Life Sciences</subject><subject>Cell Biology</subject><subject>Chemoreception</subject><subject>Comparative studies</subject><subject>Esters</subject><subject>Evolution</subject><subject>Evolutionary Biology</subject><subject>Evolutionary genetics</subject><subject>Ficus - genetics</subject><subject>Fruit trees</subject><subject>Gene sequencing</subject><subject>Genes</subject><subject>Insects</subject><subject>Ketones</subject><subject>Life Sciences</subject><subject>Microbiology</subject><subject>Mutualism</subject><subject>Odorant-binding protein</subject><subject>Odorants</subject><subject>Original Article</subject><subject>Phylogeny</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Sciences</subject><subject>Positive selection</subject><subject>Proteins</subject><subject>Symbiosis</subject><subject>Terpenes</subject><subject>Transcriptomes</subject><subject>Wasps - genetics</subject><issn>0022-2844</issn><issn>1432-1432</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kUFPGzEQha2qqAToH-ihstRLL4axveu1e2sjApGQQKKoR8vZdYJR1k49uwj-PU5DQeLA5c1hvnkz9iPkC4djDtCcIICQhhVhHHgt2MMHMuGVFGwrH8mk9AUTuqr2yQHiHQBvaiM_kX2phQao-YQsL7uUXRzYrxC7EFfUxY5Ob32f0EdM-ZFe5TT4EJGGSGdhRf843OAPenqf1uMQUnSFmUcMq9sB6Synnk5Tv3HZDeHe0-th7ILHI7K3dGv0n5_rIbmZnf6enrOLy7P59OcFa6VQA-NtI0C6tm0kOKN4DQK874zgygjJndK6UkrXblHXS9O03jWgtNEVb1rpuk4eku87301Of0ePg-0Dtn69dtGnEa0wQosKdAUF_fYGvUtjjuW6LaVMpXWjCiV2VJsTYvZLu8mhL2-2HOw2BbtLwRax_1KwD2Xo67P1uOh99zLy_9sLIHcAllZc-fy6-x3bJ_dNkhQ</recordid><startdate>20240201</startdate><enddate>20240201</enddate><creator>Yu, Hui</creator><creator>Nong, Xiaojue</creator><creator>Huang, Weicheng</creator><creator>Bhanumas, Chantarasuwan</creator><creator>Deng, Xiaoxia</creator><creator>Ding, Yamei</creator><creator>Liu, Wanzhen</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7T7</scope><scope>7TK</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-0074-9153</orcidid></search><sort><creationdate>20240201</creationdate><title>Odorant-Binding and Chemosensory Proteins in Fig Wasps: Evolutionary Insights From Comparative Studies</title><author>Yu, Hui ; Nong, Xiaojue ; Huang, Weicheng ; Bhanumas, Chantarasuwan ; Deng, Xiaoxia ; Ding, Yamei ; Liu, Wanzhen</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c326t-1c7203acc730a9615020eed92169231a68846685ab55f97cea706898417c3add3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Alcohols</topic><topic>Animal Genetics and Genomics</topic><topic>Animals</topic><topic>Binding</topic><topic>Biomedical and Life Sciences</topic><topic>Cell Biology</topic><topic>Chemoreception</topic><topic>Comparative studies</topic><topic>Esters</topic><topic>Evolution</topic><topic>Evolutionary Biology</topic><topic>Evolutionary genetics</topic><topic>Ficus - genetics</topic><topic>Fruit trees</topic><topic>Gene sequencing</topic><topic>Genes</topic><topic>Insects</topic><topic>Ketones</topic><topic>Life Sciences</topic><topic>Microbiology</topic><topic>Mutualism</topic><topic>Odorant-binding protein</topic><topic>Odorants</topic><topic>Original Article</topic><topic>Phylogeny</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Sciences</topic><topic>Positive selection</topic><topic>Proteins</topic><topic>Symbiosis</topic><topic>Terpenes</topic><topic>Transcriptomes</topic><topic>Wasps - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yu, Hui</creatorcontrib><creatorcontrib>Nong, Xiaojue</creatorcontrib><creatorcontrib>Huang, Weicheng</creatorcontrib><creatorcontrib>Bhanumas, Chantarasuwan</creatorcontrib><creatorcontrib>Deng, Xiaoxia</creatorcontrib><creatorcontrib>Ding, Yamei</creatorcontrib><creatorcontrib>Liu, Wanzhen</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of molecular evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yu, Hui</au><au>Nong, Xiaojue</au><au>Huang, Weicheng</au><au>Bhanumas, Chantarasuwan</au><au>Deng, Xiaoxia</au><au>Ding, Yamei</au><au>Liu, Wanzhen</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Odorant-Binding and Chemosensory Proteins in Fig Wasps: Evolutionary Insights From Comparative Studies</atitle><jtitle>Journal of molecular evolution</jtitle><stitle>J Mol Evol</stitle><addtitle>J Mol Evol</addtitle><date>2024-02-01</date><risdate>2024</risdate><volume>92</volume><issue>1</issue><spage>42</spage><epage>60</epage><pages>42-60</pages><issn>0022-2844</issn><eissn>1432-1432</eissn><abstract>Fig wasps (Agaonidae; Hymenoptera) are the only pollinating insects of fig trees (
Ficus
; Moraceae), forming the most closely and highly specific mutualism with the host. We used transcriptome sequences of 25 fig wasps from six genera to explore the evolution of key molecular components of fig wasp chemosensory genes: odorant-binding proteins (OBPs) and chemosensory proteins (CSPs). We identified a total 321 OBPs and 240 CSPs, with each species recording from 6 to 27 OBP genes and 6–19 CSP genes. 318 OBP genes are clustered into 17 orthologous groups and can be divided into two groups: PBP sensitive to pheromone and GOBP sensitive to general odor molecules, such as alcohols, esters, acids, ketones, and terpenoids. 240 CSP genes are clustered into 12 orthologous groups, which can be divided into three major groups and have functions, such as olfactory, tissue formation and/or regeneration, developmental, and some specific and unknown function. The gene sequences of most orthologous groups vary greatly among species and are consistent with the phylogenetic relationships between fig wasps. Strong purifying selection of both OBP and CSP genes was detected, as shown by low
ω
values. A positive selection was detected in one locus in CSP1. In conclusion, the evolution of chemosensory proteins OBPs and CSPs in fig wasps is relatively conservative, and they play an indispensable role in the life activities of fig wasps. Our results provide a starting point for understanding the molecular basis of the chemosensory systems of fig wasps.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>38280051</pmid><doi>10.1007/s00239-023-10152-x</doi><tpages>19</tpages><orcidid>https://orcid.org/0000-0003-0074-9153</orcidid></addata></record> |
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subjects | Alcohols Animal Genetics and Genomics Animals Binding Biomedical and Life Sciences Cell Biology Chemoreception Comparative studies Esters Evolution Evolutionary Biology Evolutionary genetics Ficus - genetics Fruit trees Gene sequencing Genes Insects Ketones Life Sciences Microbiology Mutualism Odorant-binding protein Odorants Original Article Phylogeny Plant Genetics and Genomics Plant Sciences Positive selection Proteins Symbiosis Terpenes Transcriptomes Wasps - genetics |
title | Odorant-Binding and Chemosensory Proteins in Fig Wasps: Evolutionary Insights From Comparative Studies |
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