A preliminary study characterizing temporal changes in soil bacterial communities after dismembered bones were buried
Determining the burial time of skeletal remains is one of the most important issues of forensic medicine. We speculated that the microbiome of gravesoil may be a promising method to infer burial time by virtue of time‐dependent. As we know, forensic scientists have established various models to pred...
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Veröffentlicht in: | Electrophoresis 2024-08, Vol.45 (15-16), p.1370-1378 |
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description | Determining the burial time of skeletal remains is one of the most important issues of forensic medicine. We speculated that the microbiome of gravesoil may be a promising method to infer burial time by virtue of time‐dependent. As we know, forensic scientists have established various models to predict the postmortem interval of a decedent based on the changes in body and soil microbiome communities. However, limited data are available on the burial time prediction for bones, especially dismembered bones. In this exploratory study, we initially conducted 16S rRNA amplicon high‐throughput sequencing on the burial soil of 10 porcine femurs within a 120‐day period and analyzed the changes in soil microbial communities. Compared with the control soil, a higher Shannon index in the microbial diversity of burial soil containing bones was observed. Correlation analysis identified 61 time‐related bacterial families and the best subset selection method obtained best subset, containing Thermomonosporaceae, Clostridiaceae, 0319‐A21, and Oxalobacteraceae, which were used to construct a simplified multiple linear regression model with a mean absolute error (MAE) of 56.69 accumulated degree day (ADD). An additional random forest model was established based on indicators for the minimum cross‐validation error of Thermomonosporaceae, Clostridiaceae, 0319‐A21, Oxalobacteraceae, and Syntrophobacteraceae, with an MAE of 55.65 ADD. The produced empirical data in this pilot study provided the evidence of feasibility that the microbial successional changes of burial soil will predict the burial time of dismembered bones and may also expand the current knowledge of the effects of bone burial on soil bacterial communities. |
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We speculated that the microbiome of gravesoil may be a promising method to infer burial time by virtue of time‐dependent. As we know, forensic scientists have established various models to predict the postmortem interval of a decedent based on the changes in body and soil microbiome communities. However, limited data are available on the burial time prediction for bones, especially dismembered bones. In this exploratory study, we initially conducted 16S rRNA amplicon high‐throughput sequencing on the burial soil of 10 porcine femurs within a 120‐day period and analyzed the changes in soil microbial communities. Compared with the control soil, a higher Shannon index in the microbial diversity of burial soil containing bones was observed. Correlation analysis identified 61 time‐related bacterial families and the best subset selection method obtained best subset, containing Thermomonosporaceae, Clostridiaceae, 0319‐A21, and Oxalobacteraceae, which were used to construct a simplified multiple linear regression model with a mean absolute error (MAE) of 56.69 accumulated degree day (ADD). An additional random forest model was established based on indicators for the minimum cross‐validation error of Thermomonosporaceae, Clostridiaceae, 0319‐A21, Oxalobacteraceae, and Syntrophobacteraceae, with an MAE of 55.65 ADD. The produced empirical data in this pilot study provided the evidence of feasibility that the microbial successional changes of burial soil will predict the burial time of dismembered bones and may also expand the current knowledge of the effects of bone burial on soil bacterial communities.</description><identifier>ISSN: 0173-0835</identifier><identifier>ISSN: 1522-2683</identifier><identifier>EISSN: 1522-2683</identifier><identifier>DOI: 10.1002/elps.202300274</identifier><identifier>PMID: 38332582</identifier><language>eng</language><publisher>Germany: Wiley Subscription Services, Inc</publisher><subject>Animals ; Bacteria - classification ; Bacteria - genetics ; Bacteria - isolation & purification ; Bone and Bones - chemistry ; Bone and Bones - microbiology ; Bones ; Burial ; burial soil microbial community ; burial time period prediction ; Correlation analysis ; dismembering bones ; Feasibility studies ; Femur - microbiology ; High-Throughput Nucleotide Sequencing ; Human remains ; Microbiota ; Microorganisms ; Postmortem Changes ; Regression models ; RNA, Ribosomal, 16S - analysis ; RNA, Ribosomal, 16S - genetics ; Soil - chemistry ; Soil analysis ; Soil Microbiology ; Swine ; Time dependence</subject><ispartof>Electrophoresis, 2024-08, Vol.45 (15-16), p.1370-1378</ispartof><rights>2024 Wiley‐VCH GmbH.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c3231-ace1caa35526ab8b12f4e7b2e7603e1c894abe4980e7079cea81b8c7fe6067fa3</cites><orcidid>0000-0002-7466-1958</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Felps.202300274$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Felps.202300274$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38332582$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Jiaqi</creatorcontrib><creatorcontrib>Liu, Zidong</creatorcontrib><creatorcontrib>Ren, Jianbo</creatorcontrib><creatorcontrib>Zhang, Mingming</creatorcontrib><creatorcontrib>Guan, Zimeng</creatorcontrib><creatorcontrib>Zhao, Xingchun</creatorcontrib><creatorcontrib>Gao, Cairong</creatorcontrib><creatorcontrib>Zhang, Gengqian</creatorcontrib><title>A preliminary study characterizing temporal changes in soil bacterial communities after dismembered bones were buried</title><title>Electrophoresis</title><addtitle>Electrophoresis</addtitle><description>Determining the burial time of skeletal remains is one of the most important issues of forensic medicine. We speculated that the microbiome of gravesoil may be a promising method to infer burial time by virtue of time‐dependent. As we know, forensic scientists have established various models to predict the postmortem interval of a decedent based on the changes in body and soil microbiome communities. However, limited data are available on the burial time prediction for bones, especially dismembered bones. In this exploratory study, we initially conducted 16S rRNA amplicon high‐throughput sequencing on the burial soil of 10 porcine femurs within a 120‐day period and analyzed the changes in soil microbial communities. Compared with the control soil, a higher Shannon index in the microbial diversity of burial soil containing bones was observed. Correlation analysis identified 61 time‐related bacterial families and the best subset selection method obtained best subset, containing Thermomonosporaceae, Clostridiaceae, 0319‐A21, and Oxalobacteraceae, which were used to construct a simplified multiple linear regression model with a mean absolute error (MAE) of 56.69 accumulated degree day (ADD). An additional random forest model was established based on indicators for the minimum cross‐validation error of Thermomonosporaceae, Clostridiaceae, 0319‐A21, Oxalobacteraceae, and Syntrophobacteraceae, with an MAE of 55.65 ADD. The produced empirical data in this pilot study provided the evidence of feasibility that the microbial successional changes of burial soil will predict the burial time of dismembered bones and may also expand the current knowledge of the effects of bone burial on soil bacterial communities.</description><subject>Animals</subject><subject>Bacteria - classification</subject><subject>Bacteria - genetics</subject><subject>Bacteria - isolation & purification</subject><subject>Bone and Bones - chemistry</subject><subject>Bone and Bones - microbiology</subject><subject>Bones</subject><subject>Burial</subject><subject>burial soil microbial community</subject><subject>burial time period prediction</subject><subject>Correlation analysis</subject><subject>dismembering bones</subject><subject>Feasibility studies</subject><subject>Femur - microbiology</subject><subject>High-Throughput Nucleotide Sequencing</subject><subject>Human remains</subject><subject>Microbiota</subject><subject>Microorganisms</subject><subject>Postmortem Changes</subject><subject>Regression models</subject><subject>RNA, Ribosomal, 16S - analysis</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Soil - chemistry</subject><subject>Soil analysis</subject><subject>Soil Microbiology</subject><subject>Swine</subject><subject>Time dependence</subject><issn>0173-0835</issn><issn>1522-2683</issn><issn>1522-2683</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc1r3DAUxEVJabZJrz0GQS65eKtPSzqGkLSFhRbanIUkP6cKlu1INmH711fLpjn00pOkmZ-GxxuEPlKypYSwTzDMZcsI4_WhxBu0oZKxhrWan6ANoYo3RHN5it6X8kgIEUaId-iUa86Z1GyD1ms8ZxhiiqPLe1yWtdvj8MtlFxbI8XccH_ACaZ6yGw76-AAFxxGXKQ7YH6GDM6W0jnGJ1XV9FXEXS4LkIUOH_TRW_bnesV9zhO4cve3dUODDy3mG7u9uf958aXbfPn-9ud41gTNOGxeABue4lKx1XnvKegHKM1At4dXSRjgPwmgCiigTwGnqdVA9tKRVveNn6OqYO-fpaYWy2BRLgGFwI0xrscwwSbhsuazo5T_o47TmsU5nOTGyrpcaU6ntkQp5KiVDb-ccU92cpcQeCrGHQuxrIfXDxUvs6hN0r_jfBiogjsBzHGD_nzh7u_v-QxlB-R_wmZjo</recordid><startdate>202408</startdate><enddate>202408</enddate><creator>Wang, Jiaqi</creator><creator>Liu, Zidong</creator><creator>Ren, Jianbo</creator><creator>Zhang, Mingming</creator><creator>Guan, Zimeng</creator><creator>Zhao, Xingchun</creator><creator>Gao, Cairong</creator><creator>Zhang, Gengqian</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7U5</scope><scope>8FD</scope><scope>L7M</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-7466-1958</orcidid></search><sort><creationdate>202408</creationdate><title>A preliminary study characterizing temporal changes in soil bacterial communities after dismembered bones were buried</title><author>Wang, Jiaqi ; Liu, Zidong ; Ren, Jianbo ; Zhang, Mingming ; Guan, Zimeng ; Zhao, Xingchun ; Gao, Cairong ; Zhang, Gengqian</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3231-ace1caa35526ab8b12f4e7b2e7603e1c894abe4980e7079cea81b8c7fe6067fa3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Animals</topic><topic>Bacteria - classification</topic><topic>Bacteria - genetics</topic><topic>Bacteria - isolation & purification</topic><topic>Bone and Bones - chemistry</topic><topic>Bone and Bones - microbiology</topic><topic>Bones</topic><topic>Burial</topic><topic>burial soil microbial community</topic><topic>burial time period prediction</topic><topic>Correlation analysis</topic><topic>dismembering bones</topic><topic>Feasibility studies</topic><topic>Femur - microbiology</topic><topic>High-Throughput Nucleotide Sequencing</topic><topic>Human remains</topic><topic>Microbiota</topic><topic>Microorganisms</topic><topic>Postmortem Changes</topic><topic>Regression models</topic><topic>RNA, Ribosomal, 16S - analysis</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Soil - chemistry</topic><topic>Soil analysis</topic><topic>Soil Microbiology</topic><topic>Swine</topic><topic>Time dependence</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Jiaqi</creatorcontrib><creatorcontrib>Liu, Zidong</creatorcontrib><creatorcontrib>Ren, Jianbo</creatorcontrib><creatorcontrib>Zhang, Mingming</creatorcontrib><creatorcontrib>Guan, Zimeng</creatorcontrib><creatorcontrib>Zhao, Xingchun</creatorcontrib><creatorcontrib>Gao, Cairong</creatorcontrib><creatorcontrib>Zhang, Gengqian</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Technology Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>MEDLINE - Academic</collection><jtitle>Electrophoresis</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Jiaqi</au><au>Liu, Zidong</au><au>Ren, Jianbo</au><au>Zhang, Mingming</au><au>Guan, Zimeng</au><au>Zhao, Xingchun</au><au>Gao, Cairong</au><au>Zhang, Gengqian</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A preliminary study characterizing temporal changes in soil bacterial communities after dismembered bones were buried</atitle><jtitle>Electrophoresis</jtitle><addtitle>Electrophoresis</addtitle><date>2024-08</date><risdate>2024</risdate><volume>45</volume><issue>15-16</issue><spage>1370</spage><epage>1378</epage><pages>1370-1378</pages><issn>0173-0835</issn><issn>1522-2683</issn><eissn>1522-2683</eissn><abstract>Determining the burial time of skeletal remains is one of the most important issues of forensic medicine. We speculated that the microbiome of gravesoil may be a promising method to infer burial time by virtue of time‐dependent. As we know, forensic scientists have established various models to predict the postmortem interval of a decedent based on the changes in body and soil microbiome communities. However, limited data are available on the burial time prediction for bones, especially dismembered bones. In this exploratory study, we initially conducted 16S rRNA amplicon high‐throughput sequencing on the burial soil of 10 porcine femurs within a 120‐day period and analyzed the changes in soil microbial communities. Compared with the control soil, a higher Shannon index in the microbial diversity of burial soil containing bones was observed. Correlation analysis identified 61 time‐related bacterial families and the best subset selection method obtained best subset, containing Thermomonosporaceae, Clostridiaceae, 0319‐A21, and Oxalobacteraceae, which were used to construct a simplified multiple linear regression model with a mean absolute error (MAE) of 56.69 accumulated degree day (ADD). An additional random forest model was established based on indicators for the minimum cross‐validation error of Thermomonosporaceae, Clostridiaceae, 0319‐A21, Oxalobacteraceae, and Syntrophobacteraceae, with an MAE of 55.65 ADD. The produced empirical data in this pilot study provided the evidence of feasibility that the microbial successional changes of burial soil will predict the burial time of dismembered bones and may also expand the current knowledge of the effects of bone burial on soil bacterial communities.</abstract><cop>Germany</cop><pub>Wiley Subscription Services, Inc</pub><pmid>38332582</pmid><doi>10.1002/elps.202300274</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0002-7466-1958</orcidid></addata></record> |
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subjects | Animals Bacteria - classification Bacteria - genetics Bacteria - isolation & purification Bone and Bones - chemistry Bone and Bones - microbiology Bones Burial burial soil microbial community burial time period prediction Correlation analysis dismembering bones Feasibility studies Femur - microbiology High-Throughput Nucleotide Sequencing Human remains Microbiota Microorganisms Postmortem Changes Regression models RNA, Ribosomal, 16S - analysis RNA, Ribosomal, 16S - genetics Soil - chemistry Soil analysis Soil Microbiology Swine Time dependence |
title | A preliminary study characterizing temporal changes in soil bacterial communities after dismembered bones were buried |
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