The impact of epitranscriptomic modifications on liver disease

Discovery of impacts of RNA modifications in liver disease has accelerated recently, with research on N6-methyladenosine and 5-methylcytosine proving particularly fruitful.These findings have yielded potential biomarkers and therapeutics to inform prognosis and course of treatment for hepatocellular...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Trends in endocrinology and metabolism 2024-04, Vol.35 (4), p.331-346
Hauptverfasser: Berggren, Keith A., Schwartz, Robert E., Kleiner, Ralph E., Ploss, Alexander
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 346
container_issue 4
container_start_page 331
container_title Trends in endocrinology and metabolism
container_volume 35
creator Berggren, Keith A.
Schwartz, Robert E.
Kleiner, Ralph E.
Ploss, Alexander
description Discovery of impacts of RNA modifications in liver disease has accelerated recently, with research on N6-methyladenosine and 5-methylcytosine proving particularly fruitful.These findings have yielded potential biomarkers and therapeutics to inform prognosis and course of treatment for hepatocellular carcinoma and metabolic-associated steatohepatitis, and are likely to continue to yield results for other liver diseases.Despite these advances, a full mechanistic understanding of RNA modifications has been slow to advance owing to experimental limitations and the outsized impact of low levels of RNA modification.Both mechanistic studies looking at specific RNA modification sites and broad multi-omic studies using patient samples should be continued, with each type of study potentially informing the other and leading to novel insights into mechanisms and alternative effects of RNA-modifying enzymes and RNA modifications. RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding. RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for
doi_str_mv 10.1016/j.tem.2023.12.007
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2925001882</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S1043276023002722</els_id><sourcerecordid>2925001882</sourcerecordid><originalsourceid>FETCH-LOGICAL-c353t-c49ca346448555559dbbdb2938218e20271aa78c0c41b21b5ba8c5a34214db753</originalsourceid><addsrcrecordid>eNp9kEtLxDAUhYMozjj6A9xIl25a82qbIggy-IIBN-M6JOktZpg2NckM-O9NmdGld3Pv4pzDPR9C1wQXBJPqblNE6AuKKSsILTCuT9CciLrJGa7IaboxZzmtKzxDFyFsMCZckPIczZighFLG5-hh_QmZ7UdlYua6DEYbvRqC8XaMrrcm611rO2tUtG4ImRuyrd2Dz1obQAW4RGed2ga4Ou4F-nh-Wi9f89X7y9vycZUbVrKYG94YxXjFuSinaVqtW02b6Q8BqUBNlKqFwYYTTYkutRKmTA5KeKvrki3Q7SF39O5rByHK3gYD260awO2CpA0tUz0haJKSg9R4F4KHTo7e9sp_S4LlhE1uZMImJ2ySUJmwJc_NMX6ne2j_HL-ckuD-IIBUcm_By2AsDAZa68FE2Tr7T_wPAOh8cg</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2925001882</pqid></control><display><type>article</type><title>The impact of epitranscriptomic modifications on liver disease</title><source>MEDLINE</source><source>Elsevier ScienceDirect Journals</source><creator>Berggren, Keith A. ; Schwartz, Robert E. ; Kleiner, Ralph E. ; Ploss, Alexander</creator><creatorcontrib>Berggren, Keith A. ; Schwartz, Robert E. ; Kleiner, Ralph E. ; Ploss, Alexander</creatorcontrib><description>Discovery of impacts of RNA modifications in liver disease has accelerated recently, with research on N6-methyladenosine and 5-methylcytosine proving particularly fruitful.These findings have yielded potential biomarkers and therapeutics to inform prognosis and course of treatment for hepatocellular carcinoma and metabolic-associated steatohepatitis, and are likely to continue to yield results for other liver diseases.Despite these advances, a full mechanistic understanding of RNA modifications has been slow to advance owing to experimental limitations and the outsized impact of low levels of RNA modification.Both mechanistic studies looking at specific RNA modification sites and broad multi-omic studies using patient samples should be continued, with each type of study potentially informing the other and leading to novel insights into mechanisms and alternative effects of RNA-modifying enzymes and RNA modifications. RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding. RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding.</description><identifier>ISSN: 1043-2760</identifier><identifier>ISSN: 1879-3061</identifier><identifier>EISSN: 1879-3061</identifier><identifier>DOI: 10.1016/j.tem.2023.12.007</identifier><identifier>PMID: 38212234</identifier><language>eng</language><publisher>United States: Elsevier Ltd</publisher><subject>5-methylcytosine ; Cell Differentiation ; epitranscriptomics ; Gene Expression Regulation ; hepatocellular carcinoma ; Humans ; liver disease ; Liver Diseases - genetics ; N6-methyladenosine ; RNA - metabolism ; RNA modification ; viral hepatitis</subject><ispartof>Trends in endocrinology and metabolism, 2024-04, Vol.35 (4), p.331-346</ispartof><rights>2023 Elsevier Ltd</rights><rights>Copyright © 2023 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c353t-c49ca346448555559dbbdb2938218e20271aa78c0c41b21b5ba8c5a34214db753</citedby><cites>FETCH-LOGICAL-c353t-c49ca346448555559dbbdb2938218e20271aa78c0c41b21b5ba8c5a34214db753</cites><orcidid>0000-0001-9322-7252</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1043276023002722$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38212234$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Berggren, Keith A.</creatorcontrib><creatorcontrib>Schwartz, Robert E.</creatorcontrib><creatorcontrib>Kleiner, Ralph E.</creatorcontrib><creatorcontrib>Ploss, Alexander</creatorcontrib><title>The impact of epitranscriptomic modifications on liver disease</title><title>Trends in endocrinology and metabolism</title><addtitle>Trends Endocrinol Metab</addtitle><description>Discovery of impacts of RNA modifications in liver disease has accelerated recently, with research on N6-methyladenosine and 5-methylcytosine proving particularly fruitful.These findings have yielded potential biomarkers and therapeutics to inform prognosis and course of treatment for hepatocellular carcinoma and metabolic-associated steatohepatitis, and are likely to continue to yield results for other liver diseases.Despite these advances, a full mechanistic understanding of RNA modifications has been slow to advance owing to experimental limitations and the outsized impact of low levels of RNA modification.Both mechanistic studies looking at specific RNA modification sites and broad multi-omic studies using patient samples should be continued, with each type of study potentially informing the other and leading to novel insights into mechanisms and alternative effects of RNA-modifying enzymes and RNA modifications. RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding. RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding.</description><subject>5-methylcytosine</subject><subject>Cell Differentiation</subject><subject>epitranscriptomics</subject><subject>Gene Expression Regulation</subject><subject>hepatocellular carcinoma</subject><subject>Humans</subject><subject>liver disease</subject><subject>Liver Diseases - genetics</subject><subject>N6-methyladenosine</subject><subject>RNA - metabolism</subject><subject>RNA modification</subject><subject>viral hepatitis</subject><issn>1043-2760</issn><issn>1879-3061</issn><issn>1879-3061</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kEtLxDAUhYMozjj6A9xIl25a82qbIggy-IIBN-M6JOktZpg2NckM-O9NmdGld3Pv4pzDPR9C1wQXBJPqblNE6AuKKSsILTCuT9CciLrJGa7IaboxZzmtKzxDFyFsMCZckPIczZighFLG5-hh_QmZ7UdlYua6DEYbvRqC8XaMrrcm611rO2tUtG4ImRuyrd2Dz1obQAW4RGed2ga4Ou4F-nh-Wi9f89X7y9vycZUbVrKYG94YxXjFuSinaVqtW02b6Q8BqUBNlKqFwYYTTYkutRKmTA5KeKvrki3Q7SF39O5rByHK3gYD260awO2CpA0tUz0haJKSg9R4F4KHTo7e9sp_S4LlhE1uZMImJ2ySUJmwJc_NMX6ne2j_HL-ckuD-IIBUcm_By2AsDAZa68FE2Tr7T_wPAOh8cg</recordid><startdate>202404</startdate><enddate>202404</enddate><creator>Berggren, Keith A.</creator><creator>Schwartz, Robert E.</creator><creator>Kleiner, Ralph E.</creator><creator>Ploss, Alexander</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-9322-7252</orcidid></search><sort><creationdate>202404</creationdate><title>The impact of epitranscriptomic modifications on liver disease</title><author>Berggren, Keith A. ; Schwartz, Robert E. ; Kleiner, Ralph E. ; Ploss, Alexander</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c353t-c49ca346448555559dbbdb2938218e20271aa78c0c41b21b5ba8c5a34214db753</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>5-methylcytosine</topic><topic>Cell Differentiation</topic><topic>epitranscriptomics</topic><topic>Gene Expression Regulation</topic><topic>hepatocellular carcinoma</topic><topic>Humans</topic><topic>liver disease</topic><topic>Liver Diseases - genetics</topic><topic>N6-methyladenosine</topic><topic>RNA - metabolism</topic><topic>RNA modification</topic><topic>viral hepatitis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Berggren, Keith A.</creatorcontrib><creatorcontrib>Schwartz, Robert E.</creatorcontrib><creatorcontrib>Kleiner, Ralph E.</creatorcontrib><creatorcontrib>Ploss, Alexander</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Trends in endocrinology and metabolism</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Berggren, Keith A.</au><au>Schwartz, Robert E.</au><au>Kleiner, Ralph E.</au><au>Ploss, Alexander</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The impact of epitranscriptomic modifications on liver disease</atitle><jtitle>Trends in endocrinology and metabolism</jtitle><addtitle>Trends Endocrinol Metab</addtitle><date>2024-04</date><risdate>2024</risdate><volume>35</volume><issue>4</issue><spage>331</spage><epage>346</epage><pages>331-346</pages><issn>1043-2760</issn><issn>1879-3061</issn><eissn>1879-3061</eissn><abstract>Discovery of impacts of RNA modifications in liver disease has accelerated recently, with research on N6-methyladenosine and 5-methylcytosine proving particularly fruitful.These findings have yielded potential biomarkers and therapeutics to inform prognosis and course of treatment for hepatocellular carcinoma and metabolic-associated steatohepatitis, and are likely to continue to yield results for other liver diseases.Despite these advances, a full mechanistic understanding of RNA modifications has been slow to advance owing to experimental limitations and the outsized impact of low levels of RNA modification.Both mechanistic studies looking at specific RNA modification sites and broad multi-omic studies using patient samples should be continued, with each type of study potentially informing the other and leading to novel insights into mechanisms and alternative effects of RNA-modifying enzymes and RNA modifications. RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding. RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding.</abstract><cop>United States</cop><pub>Elsevier Ltd</pub><pmid>38212234</pmid><doi>10.1016/j.tem.2023.12.007</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0001-9322-7252</orcidid></addata></record>
fulltext fulltext
identifier ISSN: 1043-2760
ispartof Trends in endocrinology and metabolism, 2024-04, Vol.35 (4), p.331-346
issn 1043-2760
1879-3061
1879-3061
language eng
recordid cdi_proquest_miscellaneous_2925001882
source MEDLINE; Elsevier ScienceDirect Journals
subjects 5-methylcytosine
Cell Differentiation
epitranscriptomics
Gene Expression Regulation
hepatocellular carcinoma
Humans
liver disease
Liver Diseases - genetics
N6-methyladenosine
RNA - metabolism
RNA modification
viral hepatitis
title The impact of epitranscriptomic modifications on liver disease
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-10T07%3A15%3A39IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20impact%20of%20epitranscriptomic%20modifications%20on%20liver%20disease&rft.jtitle=Trends%20in%20endocrinology%20and%20metabolism&rft.au=Berggren,%20Keith%20A.&rft.date=2024-04&rft.volume=35&rft.issue=4&rft.spage=331&rft.epage=346&rft.pages=331-346&rft.issn=1043-2760&rft.eissn=1879-3061&rft_id=info:doi/10.1016/j.tem.2023.12.007&rft_dat=%3Cproquest_cross%3E2925001882%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2925001882&rft_id=info:pmid/38212234&rft_els_id=S1043276023002722&rfr_iscdi=true