The impact of epitranscriptomic modifications on liver disease
Discovery of impacts of RNA modifications in liver disease has accelerated recently, with research on N6-methyladenosine and 5-methylcytosine proving particularly fruitful.These findings have yielded potential biomarkers and therapeutics to inform prognosis and course of treatment for hepatocellular...
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description | Discovery of impacts of RNA modifications in liver disease has accelerated recently, with research on N6-methyladenosine and 5-methylcytosine proving particularly fruitful.These findings have yielded potential biomarkers and therapeutics to inform prognosis and course of treatment for hepatocellular carcinoma and metabolic-associated steatohepatitis, and are likely to continue to yield results for other liver diseases.Despite these advances, a full mechanistic understanding of RNA modifications has been slow to advance owing to experimental limitations and the outsized impact of low levels of RNA modification.Both mechanistic studies looking at specific RNA modification sites and broad multi-omic studies using patient samples should be continued, with each type of study potentially informing the other and leading to novel insights into mechanisms and alternative effects of RNA-modifying enzymes and RNA modifications.
RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding.
RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for |
doi_str_mv | 10.1016/j.tem.2023.12.007 |
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RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding.
RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding.</description><identifier>ISSN: 1043-2760</identifier><identifier>ISSN: 1879-3061</identifier><identifier>EISSN: 1879-3061</identifier><identifier>DOI: 10.1016/j.tem.2023.12.007</identifier><identifier>PMID: 38212234</identifier><language>eng</language><publisher>United States: Elsevier Ltd</publisher><subject>5-methylcytosine ; Cell Differentiation ; epitranscriptomics ; Gene Expression Regulation ; hepatocellular carcinoma ; Humans ; liver disease ; Liver Diseases - genetics ; N6-methyladenosine ; RNA - metabolism ; RNA modification ; viral hepatitis</subject><ispartof>Trends in endocrinology and metabolism, 2024-04, Vol.35 (4), p.331-346</ispartof><rights>2023 Elsevier Ltd</rights><rights>Copyright © 2023 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c353t-c49ca346448555559dbbdb2938218e20271aa78c0c41b21b5ba8c5a34214db753</citedby><cites>FETCH-LOGICAL-c353t-c49ca346448555559dbbdb2938218e20271aa78c0c41b21b5ba8c5a34214db753</cites><orcidid>0000-0001-9322-7252</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1043276023002722$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38212234$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Berggren, Keith A.</creatorcontrib><creatorcontrib>Schwartz, Robert E.</creatorcontrib><creatorcontrib>Kleiner, Ralph E.</creatorcontrib><creatorcontrib>Ploss, Alexander</creatorcontrib><title>The impact of epitranscriptomic modifications on liver disease</title><title>Trends in endocrinology and metabolism</title><addtitle>Trends Endocrinol Metab</addtitle><description>Discovery of impacts of RNA modifications in liver disease has accelerated recently, with research on N6-methyladenosine and 5-methylcytosine proving particularly fruitful.These findings have yielded potential biomarkers and therapeutics to inform prognosis and course of treatment for hepatocellular carcinoma and metabolic-associated steatohepatitis, and are likely to continue to yield results for other liver diseases.Despite these advances, a full mechanistic understanding of RNA modifications has been slow to advance owing to experimental limitations and the outsized impact of low levels of RNA modification.Both mechanistic studies looking at specific RNA modification sites and broad multi-omic studies using patient samples should be continued, with each type of study potentially informing the other and leading to novel insights into mechanisms and alternative effects of RNA-modifying enzymes and RNA modifications.
RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding.
RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding.</description><subject>5-methylcytosine</subject><subject>Cell Differentiation</subject><subject>epitranscriptomics</subject><subject>Gene Expression Regulation</subject><subject>hepatocellular carcinoma</subject><subject>Humans</subject><subject>liver disease</subject><subject>Liver Diseases - genetics</subject><subject>N6-methyladenosine</subject><subject>RNA - metabolism</subject><subject>RNA modification</subject><subject>viral hepatitis</subject><issn>1043-2760</issn><issn>1879-3061</issn><issn>1879-3061</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kEtLxDAUhYMozjj6A9xIl25a82qbIggy-IIBN-M6JOktZpg2NckM-O9NmdGld3Pv4pzDPR9C1wQXBJPqblNE6AuKKSsILTCuT9CciLrJGa7IaboxZzmtKzxDFyFsMCZckPIczZighFLG5-hh_QmZ7UdlYua6DEYbvRqC8XaMrrcm611rO2tUtG4ImRuyrd2Dz1obQAW4RGed2ga4Ou4F-nh-Wi9f89X7y9vycZUbVrKYG94YxXjFuSinaVqtW02b6Q8BqUBNlKqFwYYTTYkutRKmTA5KeKvrki3Q7SF39O5rByHK3gYD260awO2CpA0tUz0haJKSg9R4F4KHTo7e9sp_S4LlhE1uZMImJ2ySUJmwJc_NMX6ne2j_HL-ckuD-IIBUcm_By2AsDAZa68FE2Tr7T_wPAOh8cg</recordid><startdate>202404</startdate><enddate>202404</enddate><creator>Berggren, Keith A.</creator><creator>Schwartz, Robert E.</creator><creator>Kleiner, Ralph E.</creator><creator>Ploss, Alexander</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-9322-7252</orcidid></search><sort><creationdate>202404</creationdate><title>The impact of epitranscriptomic modifications on liver disease</title><author>Berggren, Keith A. ; Schwartz, Robert E. ; Kleiner, Ralph E. ; Ploss, Alexander</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c353t-c49ca346448555559dbbdb2938218e20271aa78c0c41b21b5ba8c5a34214db753</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>5-methylcytosine</topic><topic>Cell Differentiation</topic><topic>epitranscriptomics</topic><topic>Gene Expression Regulation</topic><topic>hepatocellular carcinoma</topic><topic>Humans</topic><topic>liver disease</topic><topic>Liver Diseases - genetics</topic><topic>N6-methyladenosine</topic><topic>RNA - metabolism</topic><topic>RNA modification</topic><topic>viral hepatitis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Berggren, Keith A.</creatorcontrib><creatorcontrib>Schwartz, Robert E.</creatorcontrib><creatorcontrib>Kleiner, Ralph E.</creatorcontrib><creatorcontrib>Ploss, Alexander</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Trends in endocrinology and metabolism</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Berggren, Keith A.</au><au>Schwartz, Robert E.</au><au>Kleiner, Ralph E.</au><au>Ploss, Alexander</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The impact of epitranscriptomic modifications on liver disease</atitle><jtitle>Trends in endocrinology and metabolism</jtitle><addtitle>Trends Endocrinol Metab</addtitle><date>2024-04</date><risdate>2024</risdate><volume>35</volume><issue>4</issue><spage>331</spage><epage>346</epage><pages>331-346</pages><issn>1043-2760</issn><issn>1879-3061</issn><eissn>1879-3061</eissn><abstract>Discovery of impacts of RNA modifications in liver disease has accelerated recently, with research on N6-methyladenosine and 5-methylcytosine proving particularly fruitful.These findings have yielded potential biomarkers and therapeutics to inform prognosis and course of treatment for hepatocellular carcinoma and metabolic-associated steatohepatitis, and are likely to continue to yield results for other liver diseases.Despite these advances, a full mechanistic understanding of RNA modifications has been slow to advance owing to experimental limitations and the outsized impact of low levels of RNA modification.Both mechanistic studies looking at specific RNA modification sites and broad multi-omic studies using patient samples should be continued, with each type of study potentially informing the other and leading to novel insights into mechanisms and alternative effects of RNA-modifying enzymes and RNA modifications.
RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding.
RNA modifications have emerged as important mechanisms of gene regulation. Developmental, metabolic, and cell cycle regulatory processes are all affected by epitranscriptomic modifications, which control gene expression in a dynamic manner. The hepatic tissue is highly metabolically active and has an impressive ability to regenerate after injury. Cell proliferation, differentiation, and metabolism, which are all essential to the liver response to injury and regeneration, are regulated via RNA modification. Two such modifications, N6-methyladenosine (m6A)and 5-methylcytosine (m5C), have been identified as prognostic disease markers and potential therapeutic targets for liver diseases. Here, we describe progress in understanding the role of RNA modifications in liver biology and disease and discuss specific areas where unexpected results could lead to improved future understanding.</abstract><cop>United States</cop><pub>Elsevier Ltd</pub><pmid>38212234</pmid><doi>10.1016/j.tem.2023.12.007</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0001-9322-7252</orcidid></addata></record> |
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subjects | 5-methylcytosine Cell Differentiation epitranscriptomics Gene Expression Regulation hepatocellular carcinoma Humans liver disease Liver Diseases - genetics N6-methyladenosine RNA - metabolism RNA modification viral hepatitis |
title | The impact of epitranscriptomic modifications on liver disease |
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