Fruit residues as substrates for single-cell oil production by Rhodococcus species: physiology and genomics of carbohydrate catabolism
Strains belonging to R. opacus , R. jostii , R. fascians , R. erythropolis and R. equi exhibited differential ability to grow and produce lipids from fruit residues (grape marc and apple pomace), as well as single carbohydrates, such as glucose, gluconate, fructose and sucrose. The oleaginous specie...
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| creator | Herrero, O. Marisa Alvarez, Héctor M. |
| description | Strains belonging to
R. opacus
,
R. jostii
,
R. fascians
,
R. erythropolis
and
R. equi
exhibited differential ability to grow and produce lipids from fruit residues (grape marc and apple pomace), as well as single carbohydrates, such as glucose, gluconate, fructose and sucrose. The oleaginous species,
R. opacus
(strains PD630 and MR22) and
R. jostii
RHA1, produced higher yields of biomass (5.1–5.6 g L
−1
) and lipids (38–44% of CDW) from apple juice wastes, in comparison to
R. erythropolis
DSM43060,
R. fascians
F7 and
R. equi
ATCC6939 (4.1–4.3 g L
−1
and less than 10% CDW of lipids). The production of cellular biomass and lipids were also higher in
R. opacus
and
R. jostii
(6.8–7.2 g L
−1
and 33.9–36.5% of CDW of lipids) compared to
R. erythropolis
,
R. fascians
, and
R. equi
(3.0–3.6 g L
−1
and less than 10% CDW of lipids), during cultivation of cells on wine grape waste. A genome-wide bioinformatic analysis of rhodococci indicated that oleaginous species possess a complete set of genes/proteins necessary for the efficient utilization of carbohydrates, whereas genomes from non-oleaginous rhodococcal strains lack relevant genes coding for transporters and/or enzymes for the uptake, catabolism and assimilation of carbohydrates, such as
gntP
,
glcP
,
edd
,
eda
, among others. Results of this study highlight the potential use of the oleaginous rhodococcal species to convert sugar-rich agro-industrial wastes, such as apple pomace and grape marc, into single-cell oils. |
| doi_str_mv | 10.1007/s11274-023-03866-z |
| format | Article |
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R. opacus
,
R. jostii
,
R. fascians
,
R. erythropolis
and
R. equi
exhibited differential ability to grow and produce lipids from fruit residues (grape marc and apple pomace), as well as single carbohydrates, such as glucose, gluconate, fructose and sucrose. The oleaginous species,
R. opacus
(strains PD630 and MR22) and
R. jostii
RHA1, produced higher yields of biomass (5.1–5.6 g L
−1
) and lipids (38–44% of CDW) from apple juice wastes, in comparison to
R. erythropolis
DSM43060,
R. fascians
F7 and
R. equi
ATCC6939 (4.1–4.3 g L
−1
and less than 10% CDW of lipids). The production of cellular biomass and lipids were also higher in
R. opacus
and
R. jostii
(6.8–7.2 g L
−1
and 33.9–36.5% of CDW of lipids) compared to
R. erythropolis
,
R. fascians
, and
R. equi
(3.0–3.6 g L
−1
and less than 10% CDW of lipids), during cultivation of cells on wine grape waste. A genome-wide bioinformatic analysis of rhodococci indicated that oleaginous species possess a complete set of genes/proteins necessary for the efficient utilization of carbohydrates, whereas genomes from non-oleaginous rhodococcal strains lack relevant genes coding for transporters and/or enzymes for the uptake, catabolism and assimilation of carbohydrates, such as
gntP
,
glcP
,
edd
,
eda
, among others. Results of this study highlight the potential use of the oleaginous rhodococcal species to convert sugar-rich agro-industrial wastes, such as apple pomace and grape marc, into single-cell oils.</description><identifier>ISSN: 0959-3993</identifier><identifier>EISSN: 1573-0972</identifier><identifier>DOI: 10.1007/s11274-023-03866-z</identifier><identifier>PMID: 38177966</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Agricultural wastes ; Apple pomace ; Apples ; Applied Microbiology ; Biochemistry ; Biomass ; Biomedical and Life Sciences ; Biotechnology ; Carbohydrates ; Catabolism ; Cellular manufacture ; Environmental Engineering/Biotechnology ; Fruit juices ; Fruits ; Genes ; Genomes ; Grapes ; Industrial wastes ; Life Sciences ; Lipids ; Microbiology ; Residues ; Rhodococcus ; Substrates ; Sucrose ; Wines</subject><ispartof>World journal of microbiology & biotechnology, 2024-02, Vol.40 (2), p.61-61, Article 61</ispartof><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2024. The Author(s), under exclusive licence to Springer Nature B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c326t-f3630083a95acec59110b5c0ae4b592132ce900907f8024618767f8d71a0377d3</cites><orcidid>0000-0002-0941-9073</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11274-023-03866-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11274-023-03866-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38177966$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Herrero, O. Marisa</creatorcontrib><creatorcontrib>Alvarez, Héctor M.</creatorcontrib><title>Fruit residues as substrates for single-cell oil production by Rhodococcus species: physiology and genomics of carbohydrate catabolism</title><title>World journal of microbiology & biotechnology</title><addtitle>World J Microbiol Biotechnol</addtitle><addtitle>World J Microbiol Biotechnol</addtitle><description>Strains belonging to
R. opacus
,
R. jostii
,
R. fascians
,
R. erythropolis
and
R. equi
exhibited differential ability to grow and produce lipids from fruit residues (grape marc and apple pomace), as well as single carbohydrates, such as glucose, gluconate, fructose and sucrose. The oleaginous species,
R. opacus
(strains PD630 and MR22) and
R. jostii
RHA1, produced higher yields of biomass (5.1–5.6 g L
−1
) and lipids (38–44% of CDW) from apple juice wastes, in comparison to
R. erythropolis
DSM43060,
R. fascians
F7 and
R. equi
ATCC6939 (4.1–4.3 g L
−1
and less than 10% CDW of lipids). The production of cellular biomass and lipids were also higher in
R. opacus
and
R. jostii
(6.8–7.2 g L
−1
and 33.9–36.5% of CDW of lipids) compared to
R. erythropolis
,
R. fascians
, and
R. equi
(3.0–3.6 g L
−1
and less than 10% CDW of lipids), during cultivation of cells on wine grape waste. A genome-wide bioinformatic analysis of rhodococci indicated that oleaginous species possess a complete set of genes/proteins necessary for the efficient utilization of carbohydrates, whereas genomes from non-oleaginous rhodococcal strains lack relevant genes coding for transporters and/or enzymes for the uptake, catabolism and assimilation of carbohydrates, such as
gntP
,
glcP
,
edd
,
eda
, among others. Results of this study highlight the potential use of the oleaginous rhodococcal species to convert sugar-rich agro-industrial wastes, such as apple pomace and grape marc, into single-cell oils.</description><subject>Agricultural wastes</subject><subject>Apple pomace</subject><subject>Apples</subject><subject>Applied Microbiology</subject><subject>Biochemistry</subject><subject>Biomass</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Carbohydrates</subject><subject>Catabolism</subject><subject>Cellular manufacture</subject><subject>Environmental Engineering/Biotechnology</subject><subject>Fruit juices</subject><subject>Fruits</subject><subject>Genes</subject><subject>Genomes</subject><subject>Grapes</subject><subject>Industrial wastes</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Microbiology</subject><subject>Residues</subject><subject>Rhodococcus</subject><subject>Substrates</subject><subject>Sucrose</subject><subject>Wines</subject><issn>0959-3993</issn><issn>1573-0972</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNp9kUFv1DAQha2Kii4tf6AHZIkLl9CxncQxN1RRQKpUCdGz5TjOrqskXjzJIf0B_O7OsgUkDpzskb_3xk-PsUsB7wWAvkIhpC4LkKoA1dR18XjCNqLSNBotX7ANmMoUyhh1xl4hPgCQzKiX7Ew1QmtT1xv28yYvceY5YOyWgNwhx6XFObuZpj5ljnHaDqHwYRh4igPf59Qtfo5p4u3Kv-1Sl3zyfiHhPvgY8APf71aMaUjblbup49swpTF65Knn3uU27dbu4E_D7No0RBwv2GnvBgyvn89zdn_z6fv1l-L27vPX64-3hVeynote1QqgUc5UzgdfGSGgrTy4ULaVkUJJHwxlBN03IMtaNLqma6eFA6V1p87Zu6MvpfhBeWc7RjxEc1NIC1pJjk0pGqkJffsP-pCWPNHvDhRASWsqouSR8jkh5tDbfY6jy6sVYA8t2WNLllqyv1qyjyR682y9tGPo_kh-10KAOgJIT9M25L-7_2P7BFdEnyk</recordid><startdate>20240201</startdate><enddate>20240201</enddate><creator>Herrero, O. Marisa</creator><creator>Alvarez, Héctor M.</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7TB</scope><scope>7TK</scope><scope>7U5</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>L7M</scope><scope>M7N</scope><scope>P64</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-0941-9073</orcidid></search><sort><creationdate>20240201</creationdate><title>Fruit residues as substrates for single-cell oil production by Rhodococcus species: physiology and genomics of carbohydrate catabolism</title><author>Herrero, O. Marisa ; Alvarez, Héctor M.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c326t-f3630083a95acec59110b5c0ae4b592132ce900907f8024618767f8d71a0377d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Agricultural wastes</topic><topic>Apple pomace</topic><topic>Apples</topic><topic>Applied Microbiology</topic><topic>Biochemistry</topic><topic>Biomass</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Carbohydrates</topic><topic>Catabolism</topic><topic>Cellular manufacture</topic><topic>Environmental Engineering/Biotechnology</topic><topic>Fruit juices</topic><topic>Fruits</topic><topic>Genes</topic><topic>Genomes</topic><topic>Grapes</topic><topic>Industrial wastes</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Microbiology</topic><topic>Residues</topic><topic>Rhodococcus</topic><topic>Substrates</topic><topic>Sucrose</topic><topic>Wines</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Herrero, O. Marisa</creatorcontrib><creatorcontrib>Alvarez, Héctor M.</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>World journal of microbiology & biotechnology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Herrero, O. Marisa</au><au>Alvarez, Héctor M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Fruit residues as substrates for single-cell oil production by Rhodococcus species: physiology and genomics of carbohydrate catabolism</atitle><jtitle>World journal of microbiology & biotechnology</jtitle><stitle>World J Microbiol Biotechnol</stitle><addtitle>World J Microbiol Biotechnol</addtitle><date>2024-02-01</date><risdate>2024</risdate><volume>40</volume><issue>2</issue><spage>61</spage><epage>61</epage><pages>61-61</pages><artnum>61</artnum><issn>0959-3993</issn><eissn>1573-0972</eissn><abstract>Strains belonging to
R. opacus
,
R. jostii
,
R. fascians
,
R. erythropolis
and
R. equi
exhibited differential ability to grow and produce lipids from fruit residues (grape marc and apple pomace), as well as single carbohydrates, such as glucose, gluconate, fructose and sucrose. The oleaginous species,
R. opacus
(strains PD630 and MR22) and
R. jostii
RHA1, produced higher yields of biomass (5.1–5.6 g L
−1
) and lipids (38–44% of CDW) from apple juice wastes, in comparison to
R. erythropolis
DSM43060,
R. fascians
F7 and
R. equi
ATCC6939 (4.1–4.3 g L
−1
and less than 10% CDW of lipids). The production of cellular biomass and lipids were also higher in
R. opacus
and
R. jostii
(6.8–7.2 g L
−1
and 33.9–36.5% of CDW of lipids) compared to
R. erythropolis
,
R. fascians
, and
R. equi
(3.0–3.6 g L
−1
and less than 10% CDW of lipids), during cultivation of cells on wine grape waste. A genome-wide bioinformatic analysis of rhodococci indicated that oleaginous species possess a complete set of genes/proteins necessary for the efficient utilization of carbohydrates, whereas genomes from non-oleaginous rhodococcal strains lack relevant genes coding for transporters and/or enzymes for the uptake, catabolism and assimilation of carbohydrates, such as
gntP
,
glcP
,
edd
,
eda
, among others. Results of this study highlight the potential use of the oleaginous rhodococcal species to convert sugar-rich agro-industrial wastes, such as apple pomace and grape marc, into single-cell oils.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>38177966</pmid><doi>10.1007/s11274-023-03866-z</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-0941-9073</orcidid></addata></record> |
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| ispartof | World journal of microbiology & biotechnology, 2024-02, Vol.40 (2), p.61-61, Article 61 |
| issn | 0959-3993 1573-0972 |
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| source | SpringerLink Journals - AutoHoldings |
| subjects | Agricultural wastes Apple pomace Apples Applied Microbiology Biochemistry Biomass Biomedical and Life Sciences Biotechnology Carbohydrates Catabolism Cellular manufacture Environmental Engineering/Biotechnology Fruit juices Fruits Genes Genomes Grapes Industrial wastes Life Sciences Lipids Microbiology Residues Rhodococcus Substrates Sucrose Wines |
| title | Fruit residues as substrates for single-cell oil production by Rhodococcus species: physiology and genomics of carbohydrate catabolism |
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