Presence of onco-fetal neighborhoods in hepatocellular carcinoma is associated with relapse and response to immunotherapy
Onco-fetal reprogramming of the tumor ecosystem induces fetal developmental signatures in the tumor microenvironment, leading to immunosuppressive features. Here, we employed single-cell RNA sequencing, spatial transcriptomics and bulk RNA sequencing to delineate specific cell subsets involved in he...
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Veröffentlicht in: | Nature cancer 2024-01, Vol.5 (1), p.167-186 |
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creator | Li, Ziyi Pai, Rhea Gupta, Saurabh Currenti, Jennifer Guo, Wei Di Bartolomeo, Anna Feng, Hao Zhang, Zijie Li, Zhizhen Liu, Longqi Singh, Abhishek Bai, Yinqi Yang, Bicheng Mishra, Archita Yang, Katharine Qiao, Liang Wallace, Michael Yin, Yujia Xia, Qiang Chan, Jerry Kok Yen George, Jacob Chow, Pierce Kah-Hoe Ginhoux, Florent Sharma, Ankur |
description | Onco-fetal reprogramming of the tumor ecosystem induces fetal developmental signatures in the tumor microenvironment, leading to immunosuppressive features. Here, we employed single-cell RNA sequencing, spatial transcriptomics and bulk RNA sequencing to delineate specific cell subsets involved in hepatocellular carcinoma (HCC) relapse and response to immunotherapy. We identified POSTN
extracellular matrix cancer-associated fibroblasts (EM CAFs) as a prominent onco-fetal interacting hub, promoting tumor progression. Cell-cell communication and spatial transcriptomics analysis revealed crosstalk and co-localization of onco-fetal cells, including POSTN
CAFs, FOLR2
macrophages and PLVAP
endothelial cells. Further analyses suggest an association between onco-fetal reprogramming and epithelial-mesenchymal transition (EMT), tumor cell proliferation and recruitment of T
cells, ultimately influencing early relapse and response to immunotherapy. In summary, our study identifies POSTN
CAFs as part of the HCC onco-fetal niche and highlights its potential influence in EMT, relapse and immunotherapy response, paving the way for the use of onco-fetal signatures for therapeutic stratification. |
doi_str_mv | 10.1038/s43018-023-00672-2 |
format | Article |
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extracellular matrix cancer-associated fibroblasts (EM CAFs) as a prominent onco-fetal interacting hub, promoting tumor progression. Cell-cell communication and spatial transcriptomics analysis revealed crosstalk and co-localization of onco-fetal cells, including POSTN
CAFs, FOLR2
macrophages and PLVAP
endothelial cells. Further analyses suggest an association between onco-fetal reprogramming and epithelial-mesenchymal transition (EMT), tumor cell proliferation and recruitment of T
cells, ultimately influencing early relapse and response to immunotherapy. In summary, our study identifies POSTN
CAFs as part of the HCC onco-fetal niche and highlights its potential influence in EMT, relapse and immunotherapy response, paving the way for the use of onco-fetal signatures for therapeutic stratification.</description><identifier>ISSN: 2662-1347</identifier><identifier>EISSN: 2662-1347</identifier><identifier>DOI: 10.1038/s43018-023-00672-2</identifier><identifier>PMID: 38168935</identifier><language>eng</language><publisher>England</publisher><subject>Carcinoma, Hepatocellular - genetics ; Carcinoma, Hepatocellular - therapy ; Cell Movement - genetics ; Chronic Disease ; Ecosystem ; Endothelial Cells ; Folate Receptor 2 ; Humans ; Immunotherapy ; Liver Neoplasms - genetics ; Liver Neoplasms - therapy ; Recurrence ; Tumor Microenvironment - genetics</subject><ispartof>Nature cancer, 2024-01, Vol.5 (1), p.167-186</ispartof><rights>2024. The Author(s), under exclusive licence to Springer Nature America, Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c303t-67b7639314307f85a54074d2dd617b69969afbe93bcb2309a4c11c59f8afcb363</citedby><cites>FETCH-LOGICAL-c303t-67b7639314307f85a54074d2dd617b69969afbe93bcb2309a4c11c59f8afcb363</cites><orcidid>0000-0003-0947-9137 ; 0000-0002-8421-5476 ; 0000-0002-2857-7755 ; 0000-0003-0584-2584 ; 0000-0002-6862-136X ; 0000-0002-5828-5542 ; 0000-0002-2513-3091</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38168935$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Ziyi</creatorcontrib><creatorcontrib>Pai, Rhea</creatorcontrib><creatorcontrib>Gupta, Saurabh</creatorcontrib><creatorcontrib>Currenti, Jennifer</creatorcontrib><creatorcontrib>Guo, Wei</creatorcontrib><creatorcontrib>Di Bartolomeo, Anna</creatorcontrib><creatorcontrib>Feng, Hao</creatorcontrib><creatorcontrib>Zhang, Zijie</creatorcontrib><creatorcontrib>Li, Zhizhen</creatorcontrib><creatorcontrib>Liu, Longqi</creatorcontrib><creatorcontrib>Singh, Abhishek</creatorcontrib><creatorcontrib>Bai, Yinqi</creatorcontrib><creatorcontrib>Yang, Bicheng</creatorcontrib><creatorcontrib>Mishra, Archita</creatorcontrib><creatorcontrib>Yang, Katharine</creatorcontrib><creatorcontrib>Qiao, Liang</creatorcontrib><creatorcontrib>Wallace, Michael</creatorcontrib><creatorcontrib>Yin, Yujia</creatorcontrib><creatorcontrib>Xia, Qiang</creatorcontrib><creatorcontrib>Chan, Jerry Kok Yen</creatorcontrib><creatorcontrib>George, Jacob</creatorcontrib><creatorcontrib>Chow, Pierce Kah-Hoe</creatorcontrib><creatorcontrib>Ginhoux, Florent</creatorcontrib><creatorcontrib>Sharma, Ankur</creatorcontrib><title>Presence of onco-fetal neighborhoods in hepatocellular carcinoma is associated with relapse and response to immunotherapy</title><title>Nature cancer</title><addtitle>Nat Cancer</addtitle><description>Onco-fetal reprogramming of the tumor ecosystem induces fetal developmental signatures in the tumor microenvironment, leading to immunosuppressive features. Here, we employed single-cell RNA sequencing, spatial transcriptomics and bulk RNA sequencing to delineate specific cell subsets involved in hepatocellular carcinoma (HCC) relapse and response to immunotherapy. We identified POSTN
extracellular matrix cancer-associated fibroblasts (EM CAFs) as a prominent onco-fetal interacting hub, promoting tumor progression. Cell-cell communication and spatial transcriptomics analysis revealed crosstalk and co-localization of onco-fetal cells, including POSTN
CAFs, FOLR2
macrophages and PLVAP
endothelial cells. Further analyses suggest an association between onco-fetal reprogramming and epithelial-mesenchymal transition (EMT), tumor cell proliferation and recruitment of T
cells, ultimately influencing early relapse and response to immunotherapy. In summary, our study identifies POSTN
CAFs as part of the HCC onco-fetal niche and highlights its potential influence in EMT, relapse and immunotherapy response, paving the way for the use of onco-fetal signatures for therapeutic stratification.</description><subject>Carcinoma, Hepatocellular - genetics</subject><subject>Carcinoma, Hepatocellular - therapy</subject><subject>Cell Movement - genetics</subject><subject>Chronic Disease</subject><subject>Ecosystem</subject><subject>Endothelial Cells</subject><subject>Folate Receptor 2</subject><subject>Humans</subject><subject>Immunotherapy</subject><subject>Liver Neoplasms - genetics</subject><subject>Liver Neoplasms - therapy</subject><subject>Recurrence</subject><subject>Tumor Microenvironment - genetics</subject><issn>2662-1347</issn><issn>2662-1347</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpNkEtLxTAQhYMoXrn6B1xIlm6qebRps5SLLxB0oeswTac20iY1aZH7761eFRfDnIE5B85HyClnF5zJ6jLlkvEqY0JmjKlSZGKPHAmlRMZlXu7_0ytyktIbY0wUnBe6OiQrWXFVaVkcke1TxITeIg0tDd6GrMUJeurRvXZ1iF0ITaLO0w5HmILFvp97iNRCtM6HAahLFFIK1sGEDf1wU0cj9jAmpOCbRacx-OWYAnXDMPswdRhh3B6Tgxb6hCc_e01ebq6fN3fZw-Pt_ebqIbOSySlTZV0qqSVf-pZtVUCRszJvRNMoXtZKa6WhrVHL2tZCMg255dwWuq2gtbVUck3Od7ljDO8zpskMLn31AI9hTkZozriWepk1EbtXG0NKEVszRjdA3BrOzBd1s6NuFurmm7oRi-nsJ3-uB2z-LL-M5ScGan9L</recordid><startdate>20240101</startdate><enddate>20240101</enddate><creator>Li, Ziyi</creator><creator>Pai, Rhea</creator><creator>Gupta, Saurabh</creator><creator>Currenti, Jennifer</creator><creator>Guo, Wei</creator><creator>Di Bartolomeo, Anna</creator><creator>Feng, Hao</creator><creator>Zhang, Zijie</creator><creator>Li, Zhizhen</creator><creator>Liu, Longqi</creator><creator>Singh, Abhishek</creator><creator>Bai, Yinqi</creator><creator>Yang, Bicheng</creator><creator>Mishra, Archita</creator><creator>Yang, Katharine</creator><creator>Qiao, Liang</creator><creator>Wallace, Michael</creator><creator>Yin, Yujia</creator><creator>Xia, Qiang</creator><creator>Chan, Jerry Kok Yen</creator><creator>George, Jacob</creator><creator>Chow, Pierce Kah-Hoe</creator><creator>Ginhoux, Florent</creator><creator>Sharma, Ankur</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-0947-9137</orcidid><orcidid>https://orcid.org/0000-0002-8421-5476</orcidid><orcidid>https://orcid.org/0000-0002-2857-7755</orcidid><orcidid>https://orcid.org/0000-0003-0584-2584</orcidid><orcidid>https://orcid.org/0000-0002-6862-136X</orcidid><orcidid>https://orcid.org/0000-0002-5828-5542</orcidid><orcidid>https://orcid.org/0000-0002-2513-3091</orcidid></search><sort><creationdate>20240101</creationdate><title>Presence of onco-fetal neighborhoods in hepatocellular carcinoma is associated with relapse and response to immunotherapy</title><author>Li, Ziyi ; Pai, Rhea ; Gupta, Saurabh ; Currenti, Jennifer ; Guo, Wei ; Di Bartolomeo, Anna ; Feng, Hao ; Zhang, Zijie ; Li, Zhizhen ; Liu, Longqi ; Singh, Abhishek ; Bai, Yinqi ; Yang, Bicheng ; Mishra, Archita ; Yang, Katharine ; Qiao, Liang ; Wallace, Michael ; Yin, Yujia ; Xia, Qiang ; Chan, Jerry Kok Yen ; George, Jacob ; Chow, Pierce Kah-Hoe ; Ginhoux, Florent ; Sharma, Ankur</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c303t-67b7639314307f85a54074d2dd617b69969afbe93bcb2309a4c11c59f8afcb363</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Carcinoma, Hepatocellular - genetics</topic><topic>Carcinoma, Hepatocellular - therapy</topic><topic>Cell Movement - genetics</topic><topic>Chronic Disease</topic><topic>Ecosystem</topic><topic>Endothelial Cells</topic><topic>Folate Receptor 2</topic><topic>Humans</topic><topic>Immunotherapy</topic><topic>Liver Neoplasms - genetics</topic><topic>Liver Neoplasms - therapy</topic><topic>Recurrence</topic><topic>Tumor Microenvironment - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Ziyi</creatorcontrib><creatorcontrib>Pai, Rhea</creatorcontrib><creatorcontrib>Gupta, Saurabh</creatorcontrib><creatorcontrib>Currenti, Jennifer</creatorcontrib><creatorcontrib>Guo, Wei</creatorcontrib><creatorcontrib>Di Bartolomeo, Anna</creatorcontrib><creatorcontrib>Feng, Hao</creatorcontrib><creatorcontrib>Zhang, Zijie</creatorcontrib><creatorcontrib>Li, Zhizhen</creatorcontrib><creatorcontrib>Liu, Longqi</creatorcontrib><creatorcontrib>Singh, Abhishek</creatorcontrib><creatorcontrib>Bai, Yinqi</creatorcontrib><creatorcontrib>Yang, Bicheng</creatorcontrib><creatorcontrib>Mishra, Archita</creatorcontrib><creatorcontrib>Yang, Katharine</creatorcontrib><creatorcontrib>Qiao, Liang</creatorcontrib><creatorcontrib>Wallace, Michael</creatorcontrib><creatorcontrib>Yin, Yujia</creatorcontrib><creatorcontrib>Xia, Qiang</creatorcontrib><creatorcontrib>Chan, Jerry Kok Yen</creatorcontrib><creatorcontrib>George, Jacob</creatorcontrib><creatorcontrib>Chow, Pierce Kah-Hoe</creatorcontrib><creatorcontrib>Ginhoux, Florent</creatorcontrib><creatorcontrib>Sharma, Ankur</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Nature cancer</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Ziyi</au><au>Pai, Rhea</au><au>Gupta, Saurabh</au><au>Currenti, Jennifer</au><au>Guo, Wei</au><au>Di Bartolomeo, Anna</au><au>Feng, Hao</au><au>Zhang, Zijie</au><au>Li, Zhizhen</au><au>Liu, Longqi</au><au>Singh, Abhishek</au><au>Bai, Yinqi</au><au>Yang, Bicheng</au><au>Mishra, Archita</au><au>Yang, Katharine</au><au>Qiao, Liang</au><au>Wallace, Michael</au><au>Yin, Yujia</au><au>Xia, Qiang</au><au>Chan, Jerry Kok Yen</au><au>George, Jacob</au><au>Chow, Pierce Kah-Hoe</au><au>Ginhoux, Florent</au><au>Sharma, Ankur</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Presence of onco-fetal neighborhoods in hepatocellular carcinoma is associated with relapse and response to immunotherapy</atitle><jtitle>Nature cancer</jtitle><addtitle>Nat Cancer</addtitle><date>2024-01-01</date><risdate>2024</risdate><volume>5</volume><issue>1</issue><spage>167</spage><epage>186</epage><pages>167-186</pages><issn>2662-1347</issn><eissn>2662-1347</eissn><abstract>Onco-fetal reprogramming of the tumor ecosystem induces fetal developmental signatures in the tumor microenvironment, leading to immunosuppressive features. Here, we employed single-cell RNA sequencing, spatial transcriptomics and bulk RNA sequencing to delineate specific cell subsets involved in hepatocellular carcinoma (HCC) relapse and response to immunotherapy. We identified POSTN
extracellular matrix cancer-associated fibroblasts (EM CAFs) as a prominent onco-fetal interacting hub, promoting tumor progression. Cell-cell communication and spatial transcriptomics analysis revealed crosstalk and co-localization of onco-fetal cells, including POSTN
CAFs, FOLR2
macrophages and PLVAP
endothelial cells. Further analyses suggest an association between onco-fetal reprogramming and epithelial-mesenchymal transition (EMT), tumor cell proliferation and recruitment of T
cells, ultimately influencing early relapse and response to immunotherapy. In summary, our study identifies POSTN
CAFs as part of the HCC onco-fetal niche and highlights its potential influence in EMT, relapse and immunotherapy response, paving the way for the use of onco-fetal signatures for therapeutic stratification.</abstract><cop>England</cop><pmid>38168935</pmid><doi>10.1038/s43018-023-00672-2</doi><tpages>20</tpages><orcidid>https://orcid.org/0000-0003-0947-9137</orcidid><orcidid>https://orcid.org/0000-0002-8421-5476</orcidid><orcidid>https://orcid.org/0000-0002-2857-7755</orcidid><orcidid>https://orcid.org/0000-0003-0584-2584</orcidid><orcidid>https://orcid.org/0000-0002-6862-136X</orcidid><orcidid>https://orcid.org/0000-0002-5828-5542</orcidid><orcidid>https://orcid.org/0000-0002-2513-3091</orcidid></addata></record> |
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source | MEDLINE; Springer Nature - Complete Springer Journals; Nature |
subjects | Carcinoma, Hepatocellular - genetics Carcinoma, Hepatocellular - therapy Cell Movement - genetics Chronic Disease Ecosystem Endothelial Cells Folate Receptor 2 Humans Immunotherapy Liver Neoplasms - genetics Liver Neoplasms - therapy Recurrence Tumor Microenvironment - genetics |
title | Presence of onco-fetal neighborhoods in hepatocellular carcinoma is associated with relapse and response to immunotherapy |
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