A Solitary Stalled 80S Ribosome Prevents mRNA Recruitment to Stress Granules
In response to stress stimuli, eukaryotic cells typically suppress protein synthesis. This leads to the release of mRNAs from polysomes, their condensation with RNA-binding proteins, and the formation of non-membrane-bound cytoplasmic compartments called stress granules (SGs). SGs contain 40S but ge...
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creator | Fedorovskiy, Artem G. Burakov, Anton V. Terenin, Ilya M. Bykov, Dmitry A. Lashkevich, Kseniya A. Popenko, Vladimir I. Makarova, Nadezhda E. Sorokin, Ivan I. Sukhinina, Anastasia P. Prassolov, Vladimir S. Ivanov, Pavel V. Dmitriev, Sergey E. |
description | In response to stress stimuli, eukaryotic cells typically suppress protein synthesis. This leads to the release of mRNAs from polysomes, their condensation with RNA-binding proteins, and the formation of non-membrane-bound cytoplasmic compartments called stress granules (SGs). SGs contain 40S but generally lack 60S ribosomal subunits. It is known that cycloheximide, emetine, and anisomycin, the ribosome inhibitors that block the progression of 80S ribosomes along mRNA and stabilize polysomes, prevent SG assembly. Conversely, puromycin, which induces premature termination, releases mRNA from polysomes and stimulates the formation of SGs. The same effect is caused by some translation initiation inhibitors, which lead to polysome disassembly and the accumulation of mRNAs in the form of stalled 48S preinitiation complexes. Based on these and other data, it is believed that the trigger for SG formation is the presence of mRNA with extended ribosome-free segments, which tend to form condensates in the cell. In this study, we evaluated the ability of various small-molecule translation inhibitors to block or stimulate the assembly of SGs under conditions of severe oxidative stress induced by sodium arsenite. Contrary to expectations, we found that ribosome-targeting elongation inhibitors of a specific type, which arrest solitary 80S ribosomes at the beginning of the mRNA coding regions but do not interfere with all subsequent ribosomes in completing translation and leaving the transcripts (such as harringtonine, lactimidomycin, or T-2 toxin), completely prevent the formation of arsenite-induced SGs. These observations suggest that the presence of even a single 80S ribosome on mRNA is sufficient to prevent its recruitment into SGs, and the presence of extended ribosome-free regions of mRNA is not sufficient for SG formation. We propose that mRNA entry into SGs may be mediated by specific contacts between RNA-binding proteins and those regions on 40S subunits that remain inaccessible when ribosomes are associated. |
doi_str_mv | 10.1134/S000629792311010X |
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This leads to the release of mRNAs from polysomes, their condensation with RNA-binding proteins, and the formation of non-membrane-bound cytoplasmic compartments called stress granules (SGs). SGs contain 40S but generally lack 60S ribosomal subunits. It is known that cycloheximide, emetine, and anisomycin, the ribosome inhibitors that block the progression of 80S ribosomes along mRNA and stabilize polysomes, prevent SG assembly. Conversely, puromycin, which induces premature termination, releases mRNA from polysomes and stimulates the formation of SGs. The same effect is caused by some translation initiation inhibitors, which lead to polysome disassembly and the accumulation of mRNAs in the form of stalled 48S preinitiation complexes. Based on these and other data, it is believed that the trigger for SG formation is the presence of mRNA with extended ribosome-free segments, which tend to form condensates in the cell. In this study, we evaluated the ability of various small-molecule translation inhibitors to block or stimulate the assembly of SGs under conditions of severe oxidative stress induced by sodium arsenite. Contrary to expectations, we found that ribosome-targeting elongation inhibitors of a specific type, which arrest solitary 80S ribosomes at the beginning of the mRNA coding regions but do not interfere with all subsequent ribosomes in completing translation and leaving the transcripts (such as harringtonine, lactimidomycin, or T-2 toxin), completely prevent the formation of arsenite-induced SGs. These observations suggest that the presence of even a single 80S ribosome on mRNA is sufficient to prevent its recruitment into SGs, and the presence of extended ribosome-free regions of mRNA is not sufficient for SG formation. We propose that mRNA entry into SGs may be mediated by specific contacts between RNA-binding proteins and those regions on 40S subunits that remain inaccessible when ribosomes are associated.</description><identifier>ISSN: 0006-2979</identifier><identifier>EISSN: 1608-3040</identifier><identifier>DOI: 10.1134/S000629792311010X</identifier><identifier>PMID: 38105199</identifier><language>eng</language><publisher>Moscow: Pleiades Publishing</publisher><subject>Anisomycin ; Arsenite ; Binding ; Biochemistry ; Biomedical and Life Sciences ; Biomedicine ; Bioorganic Chemistry ; Cycloheximide ; Cytoplasmic Granules ; Elongation ; Emetine ; Genetic aspects ; Granular materials ; Health aspects ; Inhibitors ; Life Sciences ; Messenger RNA ; Microbiology ; mRNA ; Oxidative stress ; Polyribosomes ; Protein Biosynthesis ; Protein synthesis ; Protein Synthesis Inhibitors - pharmacology ; Proteins ; Puromycin ; Ribonucleic acid ; Ribosomal subunits ; Ribosomes ; Ribosomes - metabolism ; RNA ; RNA, Messenger - metabolism ; RNA-binding protein ; RNA-Binding Proteins - metabolism ; Sodium arsenite ; Stress (Physiology) ; Stress Granules ; Stress response ; Toxins ; Translation initiation</subject><ispartof>Biochemistry (Moscow), 2023-11, Vol.88 (11), p.1786-1799</ispartof><rights>The Author(s) 2023</rights><rights>COPYRIGHT 2023 Springer</rights><rights>The Author(s) 2023. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c482t-a52def46203c84d4571712fd3fa67ec2dfeda7acc0ceb06c5e7b0d15ad05f1533</citedby><cites>FETCH-LOGICAL-c482t-a52def46203c84d4571712fd3fa67ec2dfeda7acc0ceb06c5e7b0d15ad05f1533</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1134/S000629792311010X$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1134/S000629792311010X$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38105199$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fedorovskiy, Artem G.</creatorcontrib><creatorcontrib>Burakov, Anton V.</creatorcontrib><creatorcontrib>Terenin, Ilya M.</creatorcontrib><creatorcontrib>Bykov, Dmitry A.</creatorcontrib><creatorcontrib>Lashkevich, Kseniya A.</creatorcontrib><creatorcontrib>Popenko, Vladimir I.</creatorcontrib><creatorcontrib>Makarova, Nadezhda E.</creatorcontrib><creatorcontrib>Sorokin, Ivan I.</creatorcontrib><creatorcontrib>Sukhinina, Anastasia P.</creatorcontrib><creatorcontrib>Prassolov, Vladimir S.</creatorcontrib><creatorcontrib>Ivanov, Pavel V.</creatorcontrib><creatorcontrib>Dmitriev, Sergey E.</creatorcontrib><title>A Solitary Stalled 80S Ribosome Prevents mRNA Recruitment to Stress Granules</title><title>Biochemistry (Moscow)</title><addtitle>Biochemistry Moscow</addtitle><addtitle>Biochemistry (Mosc)</addtitle><description>In response to stress stimuli, eukaryotic cells typically suppress protein synthesis. This leads to the release of mRNAs from polysomes, their condensation with RNA-binding proteins, and the formation of non-membrane-bound cytoplasmic compartments called stress granules (SGs). SGs contain 40S but generally lack 60S ribosomal subunits. It is known that cycloheximide, emetine, and anisomycin, the ribosome inhibitors that block the progression of 80S ribosomes along mRNA and stabilize polysomes, prevent SG assembly. Conversely, puromycin, which induces premature termination, releases mRNA from polysomes and stimulates the formation of SGs. The same effect is caused by some translation initiation inhibitors, which lead to polysome disassembly and the accumulation of mRNAs in the form of stalled 48S preinitiation complexes. Based on these and other data, it is believed that the trigger for SG formation is the presence of mRNA with extended ribosome-free segments, which tend to form condensates in the cell. In this study, we evaluated the ability of various small-molecule translation inhibitors to block or stimulate the assembly of SGs under conditions of severe oxidative stress induced by sodium arsenite. Contrary to expectations, we found that ribosome-targeting elongation inhibitors of a specific type, which arrest solitary 80S ribosomes at the beginning of the mRNA coding regions but do not interfere with all subsequent ribosomes in completing translation and leaving the transcripts (such as harringtonine, lactimidomycin, or T-2 toxin), completely prevent the formation of arsenite-induced SGs. These observations suggest that the presence of even a single 80S ribosome on mRNA is sufficient to prevent its recruitment into SGs, and the presence of extended ribosome-free regions of mRNA is not sufficient for SG formation. We propose that mRNA entry into SGs may be mediated by specific contacts between RNA-binding proteins and those regions on 40S subunits that remain inaccessible when ribosomes are associated.</description><subject>Anisomycin</subject><subject>Arsenite</subject><subject>Binding</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Bioorganic Chemistry</subject><subject>Cycloheximide</subject><subject>Cytoplasmic Granules</subject><subject>Elongation</subject><subject>Emetine</subject><subject>Genetic aspects</subject><subject>Granular materials</subject><subject>Health aspects</subject><subject>Inhibitors</subject><subject>Life Sciences</subject><subject>Messenger RNA</subject><subject>Microbiology</subject><subject>mRNA</subject><subject>Oxidative stress</subject><subject>Polyribosomes</subject><subject>Protein Biosynthesis</subject><subject>Protein synthesis</subject><subject>Protein Synthesis Inhibitors - pharmacology</subject><subject>Proteins</subject><subject>Puromycin</subject><subject>Ribonucleic acid</subject><subject>Ribosomal subunits</subject><subject>Ribosomes</subject><subject>Ribosomes - metabolism</subject><subject>RNA</subject><subject>RNA, Messenger - metabolism</subject><subject>RNA-binding protein</subject><subject>RNA-Binding Proteins - metabolism</subject><subject>Sodium arsenite</subject><subject>Stress (Physiology)</subject><subject>Stress Granules</subject><subject>Stress response</subject><subject>Toxins</subject><subject>Translation initiation</subject><issn>0006-2979</issn><issn>1608-3040</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kU9r3DAQxUVoSbZpP0AuRdBLL05HkmXZxyWkSWFpwm4KvQmtNAoOtpVKdqHfPjKbpOQfOgjN-73HaIaQIwbHjIny2wYAKt6ohgvGgMHvPbJgFdSFgBLekcUsF7N-QD6kdJOfHBqxTw5EzUCyplmQ1ZJuQteOJv6jm9F0HTpaw4au221IoUd6GfEvDmOi_frnkq7Rxqkd-1yhY8iOiCnRs2iGqcP0kbz3pkv46f4-JL--n16dnBeri7MfJ8tVYcuaj4WR3KEvKw7C1qUrpWKKce-EN5VCy51HZ5SxFixuobIS1RYck8aB9EwKcUi-7nJvY_gzYRp13yaLXWcGDFPSvAEh-DyEjH55ht6EKQ65O83rRkpeVznxkbo2Hep28GGMxs6heqmUBNUoqDJ1_AqVj8O-tWFA3-b6EwPbGWwMKUX0-ja2fR61ZqDnDeoXG8yez_cNT9se3aPjYWUZ4DsgZWm4xvj_R2-n3gH_zKJU</recordid><startdate>20231101</startdate><enddate>20231101</enddate><creator>Fedorovskiy, Artem G.</creator><creator>Burakov, Anton V.</creator><creator>Terenin, Ilya M.</creator><creator>Bykov, Dmitry A.</creator><creator>Lashkevich, Kseniya A.</creator><creator>Popenko, Vladimir I.</creator><creator>Makarova, Nadezhda E.</creator><creator>Sorokin, Ivan I.</creator><creator>Sukhinina, Anastasia P.</creator><creator>Prassolov, Vladimir S.</creator><creator>Ivanov, Pavel V.</creator><creator>Dmitriev, Sergey E.</creator><general>Pleiades Publishing</general><general>Springer</general><general>Springer Nature B.V</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8C1</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope></search><sort><creationdate>20231101</creationdate><title>A Solitary Stalled 80S Ribosome Prevents mRNA Recruitment to Stress Granules</title><author>Fedorovskiy, Artem G. ; Burakov, Anton V. ; Terenin, Ilya M. ; Bykov, Dmitry A. ; Lashkevich, Kseniya A. ; Popenko, Vladimir I. ; Makarova, Nadezhda E. ; Sorokin, Ivan I. ; Sukhinina, Anastasia P. ; Prassolov, Vladimir S. ; Ivanov, Pavel V. ; Dmitriev, Sergey E.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c482t-a52def46203c84d4571712fd3fa67ec2dfeda7acc0ceb06c5e7b0d15ad05f1533</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Anisomycin</topic><topic>Arsenite</topic><topic>Binding</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Bioorganic Chemistry</topic><topic>Cycloheximide</topic><topic>Cytoplasmic Granules</topic><topic>Elongation</topic><topic>Emetine</topic><topic>Genetic aspects</topic><topic>Granular materials</topic><topic>Health aspects</topic><topic>Inhibitors</topic><topic>Life Sciences</topic><topic>Messenger RNA</topic><topic>Microbiology</topic><topic>mRNA</topic><topic>Oxidative stress</topic><topic>Polyribosomes</topic><topic>Protein Biosynthesis</topic><topic>Protein synthesis</topic><topic>Protein Synthesis Inhibitors - pharmacology</topic><topic>Proteins</topic><topic>Puromycin</topic><topic>Ribonucleic acid</topic><topic>Ribosomal subunits</topic><topic>Ribosomes</topic><topic>Ribosomes - metabolism</topic><topic>RNA</topic><topic>RNA, Messenger - metabolism</topic><topic>RNA-binding protein</topic><topic>RNA-Binding Proteins - metabolism</topic><topic>Sodium arsenite</topic><topic>Stress (Physiology)</topic><topic>Stress Granules</topic><topic>Stress response</topic><topic>Toxins</topic><topic>Translation initiation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fedorovskiy, Artem G.</creatorcontrib><creatorcontrib>Burakov, Anton V.</creatorcontrib><creatorcontrib>Terenin, Ilya M.</creatorcontrib><creatorcontrib>Bykov, Dmitry A.</creatorcontrib><creatorcontrib>Lashkevich, Kseniya A.</creatorcontrib><creatorcontrib>Popenko, Vladimir I.</creatorcontrib><creatorcontrib>Makarova, Nadezhda E.</creatorcontrib><creatorcontrib>Sorokin, Ivan I.</creatorcontrib><creatorcontrib>Sukhinina, Anastasia P.</creatorcontrib><creatorcontrib>Prassolov, Vladimir S.</creatorcontrib><creatorcontrib>Ivanov, Pavel V.</creatorcontrib><creatorcontrib>Dmitriev, Sergey E.</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Biochemistry (Moscow)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fedorovskiy, Artem G.</au><au>Burakov, Anton V.</au><au>Terenin, Ilya M.</au><au>Bykov, Dmitry A.</au><au>Lashkevich, Kseniya A.</au><au>Popenko, Vladimir I.</au><au>Makarova, Nadezhda E.</au><au>Sorokin, Ivan I.</au><au>Sukhinina, Anastasia P.</au><au>Prassolov, Vladimir S.</au><au>Ivanov, Pavel V.</au><au>Dmitriev, Sergey E.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Solitary Stalled 80S Ribosome Prevents mRNA Recruitment to Stress Granules</atitle><jtitle>Biochemistry (Moscow)</jtitle><stitle>Biochemistry Moscow</stitle><addtitle>Biochemistry (Mosc)</addtitle><date>2023-11-01</date><risdate>2023</risdate><volume>88</volume><issue>11</issue><spage>1786</spage><epage>1799</epage><pages>1786-1799</pages><issn>0006-2979</issn><eissn>1608-3040</eissn><abstract>In response to stress stimuli, eukaryotic cells typically suppress protein synthesis. This leads to the release of mRNAs from polysomes, their condensation with RNA-binding proteins, and the formation of non-membrane-bound cytoplasmic compartments called stress granules (SGs). SGs contain 40S but generally lack 60S ribosomal subunits. It is known that cycloheximide, emetine, and anisomycin, the ribosome inhibitors that block the progression of 80S ribosomes along mRNA and stabilize polysomes, prevent SG assembly. Conversely, puromycin, which induces premature termination, releases mRNA from polysomes and stimulates the formation of SGs. The same effect is caused by some translation initiation inhibitors, which lead to polysome disassembly and the accumulation of mRNAs in the form of stalled 48S preinitiation complexes. Based on these and other data, it is believed that the trigger for SG formation is the presence of mRNA with extended ribosome-free segments, which tend to form condensates in the cell. In this study, we evaluated the ability of various small-molecule translation inhibitors to block or stimulate the assembly of SGs under conditions of severe oxidative stress induced by sodium arsenite. Contrary to expectations, we found that ribosome-targeting elongation inhibitors of a specific type, which arrest solitary 80S ribosomes at the beginning of the mRNA coding regions but do not interfere with all subsequent ribosomes in completing translation and leaving the transcripts (such as harringtonine, lactimidomycin, or T-2 toxin), completely prevent the formation of arsenite-induced SGs. These observations suggest that the presence of even a single 80S ribosome on mRNA is sufficient to prevent its recruitment into SGs, and the presence of extended ribosome-free regions of mRNA is not sufficient for SG formation. We propose that mRNA entry into SGs may be mediated by specific contacts between RNA-binding proteins and those regions on 40S subunits that remain inaccessible when ribosomes are associated.</abstract><cop>Moscow</cop><pub>Pleiades Publishing</pub><pmid>38105199</pmid><doi>10.1134/S000629792311010X</doi><tpages>14</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Anisomycin Arsenite Binding Biochemistry Biomedical and Life Sciences Biomedicine Bioorganic Chemistry Cycloheximide Cytoplasmic Granules Elongation Emetine Genetic aspects Granular materials Health aspects Inhibitors Life Sciences Messenger RNA Microbiology mRNA Oxidative stress Polyribosomes Protein Biosynthesis Protein synthesis Protein Synthesis Inhibitors - pharmacology Proteins Puromycin Ribonucleic acid Ribosomal subunits Ribosomes Ribosomes - metabolism RNA RNA, Messenger - metabolism RNA-binding protein RNA-Binding Proteins - metabolism Sodium arsenite Stress (Physiology) Stress Granules Stress response Toxins Translation initiation |
title | A Solitary Stalled 80S Ribosome Prevents mRNA Recruitment to Stress Granules |
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