Development and validation of a machine learning model to predict the use of renal replacement therapy in 14,374 patients with COVID-19
To develop a model to predict the use of renal replacement therapy (RRT) in COVID-19 patients. Retrospective analysis of multicenter cohort of intensive care unit (ICU) admissions of Brazil involving COVID-19 critically adult patients, requiring ventilatory support, admitted to 126 Brazilian ICUs, f...
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| Veröffentlicht in: | Journal of critical care 2024-04, Vol.80, p.154480, Article 154480 |
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| creator | França, Allan R M Rocha, Eduardo Bastos, Leonardo S L Bozza, Fernando A Kurtz, Pedro Maccariello, Elizabeth Lapa E Silva, José Roberto Salluh, Jorge I F |
| description | To develop a model to predict the use of renal replacement therapy (RRT) in COVID-19 patients.
Retrospective analysis of multicenter cohort of intensive care unit (ICU) admissions of Brazil involving COVID-19 critically adult patients, requiring ventilatory support, admitted to 126 Brazilian ICUs, from February 2020 to December 2021 (development) and January to May 2022 (validation). No interventions were performed.
Eight machine learning models' classifications were evaluated. Models were developed using an 80/20 testing/train split ratio and cross-validation. Thirteen candidate predictors were selected using the Recursive Feature Elimination (RFE) algorithm. Discrimination and calibration were assessed. Temporal validation was performed using data from 2022. Of 14,374 COVID-19 patients with initial respiratory support, 1924 (13%) required RRT. RRT patients were older (65 [53-75] vs. 55 [42-68]), had more comorbidities (Charlson's Comorbidity Index 1.0 [0.00-2.00] vs 0.0 [0.00-1.00]), had higher severity (SAPS-3 median: 61 [51-74] vs 48 [41-58]), and had higher in-hospital mortality (71% vs 22%) compared to non-RRT. Risk factors for RRT, such as Creatinine, Glasgow Coma Scale, Urea, Invasive Mechanical Ventilation, Age, Chronic Kidney Disease, Platelets count, Vasopressors, Noninvasive Ventilation, Hypertension, Diabetes, modified frailty index (mFI) and Gender, were identified. The best discrimination and calibration were found in the Random Forest (AUC [95%CI]: 0.78 [0.75-0.81] and Brier's Score: 0.09 [95%CI: 0.08-0.10]). The final model (Random Forest) showed comparable performance in the temporal validation (AUC [95%CI]: 0.79 [0.75-0.84] and Brier's Score, 0.08 [95%CI: 0.08-0.1]).
An early ML model using easily available clinical and laboratory data accurately predicted the use of RRT in critically ill patients with COVID-19. Our study demonstrates that using ML techniques is feasible to provide early prediction of use of RRT in COVID-19 patients. |
| doi_str_mv | 10.1016/j.jcrc.2023.154480 |
| format | Article |
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Retrospective analysis of multicenter cohort of intensive care unit (ICU) admissions of Brazil involving COVID-19 critically adult patients, requiring ventilatory support, admitted to 126 Brazilian ICUs, from February 2020 to December 2021 (development) and January to May 2022 (validation). No interventions were performed.
Eight machine learning models' classifications were evaluated. Models were developed using an 80/20 testing/train split ratio and cross-validation. Thirteen candidate predictors were selected using the Recursive Feature Elimination (RFE) algorithm. Discrimination and calibration were assessed. Temporal validation was performed using data from 2022. Of 14,374 COVID-19 patients with initial respiratory support, 1924 (13%) required RRT. RRT patients were older (65 [53-75] vs. 55 [42-68]), had more comorbidities (Charlson's Comorbidity Index 1.0 [0.00-2.00] vs 0.0 [0.00-1.00]), had higher severity (SAPS-3 median: 61 [51-74] vs 48 [41-58]), and had higher in-hospital mortality (71% vs 22%) compared to non-RRT. Risk factors for RRT, such as Creatinine, Glasgow Coma Scale, Urea, Invasive Mechanical Ventilation, Age, Chronic Kidney Disease, Platelets count, Vasopressors, Noninvasive Ventilation, Hypertension, Diabetes, modified frailty index (mFI) and Gender, were identified. The best discrimination and calibration were found in the Random Forest (AUC [95%CI]: 0.78 [0.75-0.81] and Brier's Score: 0.09 [95%CI: 0.08-0.10]). The final model (Random Forest) showed comparable performance in the temporal validation (AUC [95%CI]: 0.79 [0.75-0.84] and Brier's Score, 0.08 [95%CI: 0.08-0.1]).
An early ML model using easily available clinical and laboratory data accurately predicted the use of RRT in critically ill patients with COVID-19. Our study demonstrates that using ML techniques is feasible to provide early prediction of use of RRT in COVID-19 patients.</description><identifier>ISSN: 0883-9441</identifier><identifier>ISSN: 1557-8615</identifier><identifier>EISSN: 1557-8615</identifier><identifier>DOI: 10.1016/j.jcrc.2023.154480</identifier><identifier>PMID: 38016226</identifier><language>eng</language><publisher>United States: Elsevier Limited</publisher><subject>Acute Kidney Injury - therapy ; Adult ; Calibration ; Catheters ; Coronaviruses ; COVID-19 ; COVID-19 - therapy ; Critical Illness ; Feature selection ; Humans ; Intensive Care Units ; Lungs ; Machine Learning ; Mortality ; Ostomy ; Patient admissions ; Probability ; Regression analysis ; Renal replacement therapy ; Renal Replacement Therapy - methods ; Retrospective Studies ; Tracheotomy ; Variables ; Ventilators</subject><ispartof>Journal of critical care, 2024-04, Vol.80, p.154480, Article 154480</ispartof><rights>Copyright © 2023 Elsevier Inc. All rights reserved.</rights><rights>2023. Elsevier Inc.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c331t-b8822a7de893a31effcaa99ec58ab876f3c2af3e756d39ea4efce212b972528e3</citedby><cites>FETCH-LOGICAL-c331t-b8822a7de893a31effcaa99ec58ab876f3c2af3e756d39ea4efce212b972528e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38016226$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>França, Allan R M</creatorcontrib><creatorcontrib>Rocha, Eduardo</creatorcontrib><creatorcontrib>Bastos, Leonardo S L</creatorcontrib><creatorcontrib>Bozza, Fernando A</creatorcontrib><creatorcontrib>Kurtz, Pedro</creatorcontrib><creatorcontrib>Maccariello, Elizabeth</creatorcontrib><creatorcontrib>Lapa E Silva, José Roberto</creatorcontrib><creatorcontrib>Salluh, Jorge I F</creatorcontrib><title>Development and validation of a machine learning model to predict the use of renal replacement therapy in 14,374 patients with COVID-19</title><title>Journal of critical care</title><addtitle>J Crit Care</addtitle><description>To develop a model to predict the use of renal replacement therapy (RRT) in COVID-19 patients.
Retrospective analysis of multicenter cohort of intensive care unit (ICU) admissions of Brazil involving COVID-19 critically adult patients, requiring ventilatory support, admitted to 126 Brazilian ICUs, from February 2020 to December 2021 (development) and January to May 2022 (validation). No interventions were performed.
Eight machine learning models' classifications were evaluated. Models were developed using an 80/20 testing/train split ratio and cross-validation. Thirteen candidate predictors were selected using the Recursive Feature Elimination (RFE) algorithm. Discrimination and calibration were assessed. Temporal validation was performed using data from 2022. Of 14,374 COVID-19 patients with initial respiratory support, 1924 (13%) required RRT. RRT patients were older (65 [53-75] vs. 55 [42-68]), had more comorbidities (Charlson's Comorbidity Index 1.0 [0.00-2.00] vs 0.0 [0.00-1.00]), had higher severity (SAPS-3 median: 61 [51-74] vs 48 [41-58]), and had higher in-hospital mortality (71% vs 22%) compared to non-RRT. Risk factors for RRT, such as Creatinine, Glasgow Coma Scale, Urea, Invasive Mechanical Ventilation, Age, Chronic Kidney Disease, Platelets count, Vasopressors, Noninvasive Ventilation, Hypertension, Diabetes, modified frailty index (mFI) and Gender, were identified. The best discrimination and calibration were found in the Random Forest (AUC [95%CI]: 0.78 [0.75-0.81] and Brier's Score: 0.09 [95%CI: 0.08-0.10]). The final model (Random Forest) showed comparable performance in the temporal validation (AUC [95%CI]: 0.79 [0.75-0.84] and Brier's Score, 0.08 [95%CI: 0.08-0.1]).
An early ML model using easily available clinical and laboratory data accurately predicted the use of RRT in critically ill patients with COVID-19. Our study demonstrates that using ML techniques is feasible to provide early prediction of use of RRT in COVID-19 patients.</description><subject>Acute Kidney Injury - therapy</subject><subject>Adult</subject><subject>Calibration</subject><subject>Catheters</subject><subject>Coronaviruses</subject><subject>COVID-19</subject><subject>COVID-19 - therapy</subject><subject>Critical Illness</subject><subject>Feature selection</subject><subject>Humans</subject><subject>Intensive Care Units</subject><subject>Lungs</subject><subject>Machine Learning</subject><subject>Mortality</subject><subject>Ostomy</subject><subject>Patient admissions</subject><subject>Probability</subject><subject>Regression analysis</subject><subject>Renal replacement therapy</subject><subject>Renal Replacement Therapy - methods</subject><subject>Retrospective Studies</subject><subject>Tracheotomy</subject><subject>Variables</subject><subject>Ventilators</subject><issn>0883-9441</issn><issn>1557-8615</issn><issn>1557-8615</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNpdkU1v1DAQhi0EokvhD3BAlrhwIFt_JLF9RFs-KlXqpXC1Zp0Jm8ixg50U9Rf0b-NlC4deZg7zvK80egh5y9mWM95ejNvRJbcVTMgtb-pas2dkw5tGVbrlzXOyYVrLytQ1PyOvch4Z40rK5iU5k7rkhWg35OES79DHecKwUAgdvQM_dLAMMdDYU6ATuMMQkHqEFIbwk06xQ0-XSOeE3eAWuhyQrhmPeMIAvszZg8O_leWYYL6nQ6C8_ihVTedSXi6Z_h6WA93d_Li6rLh5TV704DO-edzn5PuXz7e7b9X1zder3afryknJl2qvtRCgOtRGguTY9w7AGHSNhr1WbS-dgF6iatpOGoQae4eCi71RohEa5Tn5cOqdU_y1Yl7sNGSH3kPAuGYrtGlEy1TdFvT9E3SMayoPFsrwtuYtl6pQ4kS5FHNO2Ns5DROke8uZPWqyoz1qskdN9qSphN49Vq_7Cbv_kX9e5B-Mso71</recordid><startdate>202404</startdate><enddate>202404</enddate><creator>França, Allan R M</creator><creator>Rocha, Eduardo</creator><creator>Bastos, Leonardo S L</creator><creator>Bozza, Fernando A</creator><creator>Kurtz, Pedro</creator><creator>Maccariello, Elizabeth</creator><creator>Lapa E Silva, José Roberto</creator><creator>Salluh, Jorge I F</creator><general>Elsevier Limited</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7RV</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AN0</scope><scope>ASE</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FPQ</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K6X</scope><scope>K9.</scope><scope>KB0</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>NAPCQ</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope></search><sort><creationdate>202404</creationdate><title>Development and validation of a machine learning model to predict the use of renal replacement therapy in 14,374 patients with COVID-19</title><author>França, Allan R M ; 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Retrospective analysis of multicenter cohort of intensive care unit (ICU) admissions of Brazil involving COVID-19 critically adult patients, requiring ventilatory support, admitted to 126 Brazilian ICUs, from February 2020 to December 2021 (development) and January to May 2022 (validation). No interventions were performed.
Eight machine learning models' classifications were evaluated. Models were developed using an 80/20 testing/train split ratio and cross-validation. Thirteen candidate predictors were selected using the Recursive Feature Elimination (RFE) algorithm. Discrimination and calibration were assessed. Temporal validation was performed using data from 2022. Of 14,374 COVID-19 patients with initial respiratory support, 1924 (13%) required RRT. RRT patients were older (65 [53-75] vs. 55 [42-68]), had more comorbidities (Charlson's Comorbidity Index 1.0 [0.00-2.00] vs 0.0 [0.00-1.00]), had higher severity (SAPS-3 median: 61 [51-74] vs 48 [41-58]), and had higher in-hospital mortality (71% vs 22%) compared to non-RRT. Risk factors for RRT, such as Creatinine, Glasgow Coma Scale, Urea, Invasive Mechanical Ventilation, Age, Chronic Kidney Disease, Platelets count, Vasopressors, Noninvasive Ventilation, Hypertension, Diabetes, modified frailty index (mFI) and Gender, were identified. The best discrimination and calibration were found in the Random Forest (AUC [95%CI]: 0.78 [0.75-0.81] and Brier's Score: 0.09 [95%CI: 0.08-0.10]). The final model (Random Forest) showed comparable performance in the temporal validation (AUC [95%CI]: 0.79 [0.75-0.84] and Brier's Score, 0.08 [95%CI: 0.08-0.1]).
An early ML model using easily available clinical and laboratory data accurately predicted the use of RRT in critically ill patients with COVID-19. Our study demonstrates that using ML techniques is feasible to provide early prediction of use of RRT in COVID-19 patients.</abstract><cop>United States</cop><pub>Elsevier Limited</pub><pmid>38016226</pmid><doi>10.1016/j.jcrc.2023.154480</doi></addata></record> |
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| source | MEDLINE; Elsevier ScienceDirect Journals |
| subjects | Acute Kidney Injury - therapy Adult Calibration Catheters Coronaviruses COVID-19 COVID-19 - therapy Critical Illness Feature selection Humans Intensive Care Units Lungs Machine Learning Mortality Ostomy Patient admissions Probability Regression analysis Renal replacement therapy Renal Replacement Therapy - methods Retrospective Studies Tracheotomy Variables Ventilators |
| title | Development and validation of a machine learning model to predict the use of renal replacement therapy in 14,374 patients with COVID-19 |
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