Identification and Validation of CXCL2 as a Key Gene for Childhood Obesity

This study aims to identify the key genes and their regulatory networks by bioinformatics, increasing understanding of childhood obesity. The data comes from the GEO and Immport database. The immune microenvironment was explored in GSE104815. Key genes were identified by intersection of DEGs with th...

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Veröffentlicht in:Biochemical genetics 2024-08, Vol.62 (4), p.2743-2765
Hauptverfasser: He, Enyang, Chang, Kaili, Dong, Liang, Jia, Miao, Sun, Wenjing, Cui, Hualei
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Sprache:eng
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Zusammenfassung:This study aims to identify the key genes and their regulatory networks by bioinformatics, increasing understanding of childhood obesity. The data comes from the GEO and Immport database. The immune microenvironment was explored in GSE104815. Key genes were identified by intersection of DEGs with the immune gene set. Enrichment analysis revealed gene-related functions and correlation analysis explored the relationship. Regulatory networks were constructed based on miRcode, TarBase and TargetScan databases. GSE29718 was used to validate our findings. Intercellular communication and cell differentiation trends were further explored using single-cell data from GSE153643. Based on our research, the immune microenvironment in the obese group showed higher immune infiltration. We found 962 DEGs and CXCL2 was identified as the key gene. The co-regulatory network of lncRNA-miRNA-mRNA suggested that obtaining TM4SF19-AS1, GUSBP11, AC105020.1, LINC00189, COL4A2-AS2, VIPR1-AS1 and LINC00242 may regulate CXCL2 ( r  > 0.9 and P  
ISSN:0006-2928
1573-4927
1573-4927
DOI:10.1007/s10528-023-10566-8