Tar patties are hotspots of hydrocarbon turnover and nitrogen fixation during a nearshore pollution event in the oligotrophic southeastern Mediterranean Sea
Weathered oil, that is, tar, forms hotspots of hydrocarbon degradation by complex biota in marine environment. Here, we used marker gene sequencing and metagenomics to characterize the communities of bacteria, archaea and eukaryotes that colonized tar patties and control samples (wood, plastic), col...
Gespeichert in:
Veröffentlicht in: | Marine pollution bulletin 2023-12, Vol.197, p.115747-115747, Article 115747 |
---|---|
Hauptverfasser: | , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 115747 |
---|---|
container_issue | |
container_start_page | 115747 |
container_title | Marine pollution bulletin |
container_volume | 197 |
creator | Rubin-Blum, Maxim Yudkovsky, Yana Marmen, Sophi Raveh, Ofrat Amrani, Alon Kutuzov, Ilya Guy-Haim, Tamar Rahav, Eyal |
description | Weathered oil, that is, tar, forms hotspots of hydrocarbon degradation by complex biota in marine environment. Here, we used marker gene sequencing and metagenomics to characterize the communities of bacteria, archaea and eukaryotes that colonized tar patties and control samples (wood, plastic), collected in the littoral following an offshore spill in the warm, oligotrophic southeastern Mediterranean Sea (SEMS). We show potential aerobic and anaerobic hydrocarbon catabolism niches on tar interior and exterior, linking carbon, sulfur and nitrogen cycles. Alongside aromatics and larger alkanes, short-chain alkanes appear to fuel dominant populations, both the aerobic clade UBA5335 (Macondimonas), anaerobic Syntropharchaeales, and facultative Mycobacteriales. Most key organisms, including the hydrocarbon degraders and cyanobacteria, have the potential to fix dinitrogen, potentially alleviating the nitrogen limitation of hydrocarbon degradation in the SEMS. We highlight the complexity of these tar-associated communities, where bacteria, archaea and eukaryotes co-exist, likely exchanging metabolites and competing for resources and space. |
doi_str_mv | 10.1016/j.marpolbul.2023.115747 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2893836424</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2893836424</sourcerecordid><originalsourceid>FETCH-LOGICAL-c362t-4fe7efbc0bc7914422741fd0a1fa0852a381130c04c171c7be5af345fe3545333</originalsourceid><addsrcrecordid>eNo9kc9u1DAQxi0EokvhFcBHLllsjxMnR1TxTyriQJG4WY4z3niVtYPtVPRdeFhctvQwmtHMfN-M9CPkDWd7znj37rg_mbTGZdyWvWAC9py3SqonZMd7NTQAHTwlO8ZE24Dofl6QFzkfGWNKKP6cXIAahlYC25E_NybR1ZTiMVOTkM6x5LUGjY7Od1OK1qQxBlq2FOItJmrCRIMvKR4wUOd_m-LreNqSDwdqaECT8hyrU31v2f4N8RZDob6azEjj4g-xytfZW5rjVnsmF0yBfsXJ1yKZ6hHodzQvyTNnloyvHvIl-fHxw83V5-b626cvV--vGwudKI10qNCNlo1WDVxKIZTkbmKGO8P6VhjoOQdmmbRccatGbI0D2TqEVrYAcEnenn3XFH9tmIs--WxxWeonccta9AP00Ekh66o6r9oUc07o9Jp8ZXGnOdP3aPRRP6LR92j0GU1Vvn44so0nnB51_1nAX7xvknY</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2893836424</pqid></control><display><type>article</type><title>Tar patties are hotspots of hydrocarbon turnover and nitrogen fixation during a nearshore pollution event in the oligotrophic southeastern Mediterranean Sea</title><source>MEDLINE</source><source>Access via ScienceDirect (Elsevier)</source><creator>Rubin-Blum, Maxim ; Yudkovsky, Yana ; Marmen, Sophi ; Raveh, Ofrat ; Amrani, Alon ; Kutuzov, Ilya ; Guy-Haim, Tamar ; Rahav, Eyal</creator><creatorcontrib>Rubin-Blum, Maxim ; Yudkovsky, Yana ; Marmen, Sophi ; Raveh, Ofrat ; Amrani, Alon ; Kutuzov, Ilya ; Guy-Haim, Tamar ; Rahav, Eyal</creatorcontrib><description>Weathered oil, that is, tar, forms hotspots of hydrocarbon degradation by complex biota in marine environment. Here, we used marker gene sequencing and metagenomics to characterize the communities of bacteria, archaea and eukaryotes that colonized tar patties and control samples (wood, plastic), collected in the littoral following an offshore spill in the warm, oligotrophic southeastern Mediterranean Sea (SEMS). We show potential aerobic and anaerobic hydrocarbon catabolism niches on tar interior and exterior, linking carbon, sulfur and nitrogen cycles. Alongside aromatics and larger alkanes, short-chain alkanes appear to fuel dominant populations, both the aerobic clade UBA5335 (Macondimonas), anaerobic Syntropharchaeales, and facultative Mycobacteriales. Most key organisms, including the hydrocarbon degraders and cyanobacteria, have the potential to fix dinitrogen, potentially alleviating the nitrogen limitation of hydrocarbon degradation in the SEMS. We highlight the complexity of these tar-associated communities, where bacteria, archaea and eukaryotes co-exist, likely exchanging metabolites and competing for resources and space.</description><identifier>ISSN: 0025-326X</identifier><identifier>EISSN: 1879-3363</identifier><identifier>DOI: 10.1016/j.marpolbul.2023.115747</identifier><identifier>PMID: 37995430</identifier><language>eng</language><publisher>England</publisher><subject>Alkanes - metabolism ; Archaea - metabolism ; Bacteria - genetics ; Biodegradation, Environmental ; Hydrocarbons - metabolism ; Mediterranean Sea ; Nitrogen Fixation ; Petroleum Pollution</subject><ispartof>Marine pollution bulletin, 2023-12, Vol.197, p.115747-115747, Article 115747</ispartof><rights>Copyright © 2023 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c362t-4fe7efbc0bc7914422741fd0a1fa0852a381130c04c171c7be5af345fe3545333</citedby><cites>FETCH-LOGICAL-c362t-4fe7efbc0bc7914422741fd0a1fa0852a381130c04c171c7be5af345fe3545333</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37995430$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Rubin-Blum, Maxim</creatorcontrib><creatorcontrib>Yudkovsky, Yana</creatorcontrib><creatorcontrib>Marmen, Sophi</creatorcontrib><creatorcontrib>Raveh, Ofrat</creatorcontrib><creatorcontrib>Amrani, Alon</creatorcontrib><creatorcontrib>Kutuzov, Ilya</creatorcontrib><creatorcontrib>Guy-Haim, Tamar</creatorcontrib><creatorcontrib>Rahav, Eyal</creatorcontrib><title>Tar patties are hotspots of hydrocarbon turnover and nitrogen fixation during a nearshore pollution event in the oligotrophic southeastern Mediterranean Sea</title><title>Marine pollution bulletin</title><addtitle>Mar Pollut Bull</addtitle><description>Weathered oil, that is, tar, forms hotspots of hydrocarbon degradation by complex biota in marine environment. Here, we used marker gene sequencing and metagenomics to characterize the communities of bacteria, archaea and eukaryotes that colonized tar patties and control samples (wood, plastic), collected in the littoral following an offshore spill in the warm, oligotrophic southeastern Mediterranean Sea (SEMS). We show potential aerobic and anaerobic hydrocarbon catabolism niches on tar interior and exterior, linking carbon, sulfur and nitrogen cycles. Alongside aromatics and larger alkanes, short-chain alkanes appear to fuel dominant populations, both the aerobic clade UBA5335 (Macondimonas), anaerobic Syntropharchaeales, and facultative Mycobacteriales. Most key organisms, including the hydrocarbon degraders and cyanobacteria, have the potential to fix dinitrogen, potentially alleviating the nitrogen limitation of hydrocarbon degradation in the SEMS. We highlight the complexity of these tar-associated communities, where bacteria, archaea and eukaryotes co-exist, likely exchanging metabolites and competing for resources and space.</description><subject>Alkanes - metabolism</subject><subject>Archaea - metabolism</subject><subject>Bacteria - genetics</subject><subject>Biodegradation, Environmental</subject><subject>Hydrocarbons - metabolism</subject><subject>Mediterranean Sea</subject><subject>Nitrogen Fixation</subject><subject>Petroleum Pollution</subject><issn>0025-326X</issn><issn>1879-3363</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kc9u1DAQxi0EokvhFcBHLllsjxMnR1TxTyriQJG4WY4z3niVtYPtVPRdeFhctvQwmtHMfN-M9CPkDWd7znj37rg_mbTGZdyWvWAC9py3SqonZMd7NTQAHTwlO8ZE24Dofl6QFzkfGWNKKP6cXIAahlYC25E_NybR1ZTiMVOTkM6x5LUGjY7Od1OK1qQxBlq2FOItJmrCRIMvKR4wUOd_m-LreNqSDwdqaECT8hyrU31v2f4N8RZDob6azEjj4g-xytfZW5rjVnsmF0yBfsXJ1yKZ6hHodzQvyTNnloyvHvIl-fHxw83V5-b626cvV--vGwudKI10qNCNlo1WDVxKIZTkbmKGO8P6VhjoOQdmmbRccatGbI0D2TqEVrYAcEnenn3XFH9tmIs--WxxWeonccta9AP00Ekh66o6r9oUc07o9Jp8ZXGnOdP3aPRRP6LR92j0GU1Vvn44so0nnB51_1nAX7xvknY</recordid><startdate>202312</startdate><enddate>202312</enddate><creator>Rubin-Blum, Maxim</creator><creator>Yudkovsky, Yana</creator><creator>Marmen, Sophi</creator><creator>Raveh, Ofrat</creator><creator>Amrani, Alon</creator><creator>Kutuzov, Ilya</creator><creator>Guy-Haim, Tamar</creator><creator>Rahav, Eyal</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>202312</creationdate><title>Tar patties are hotspots of hydrocarbon turnover and nitrogen fixation during a nearshore pollution event in the oligotrophic southeastern Mediterranean Sea</title><author>Rubin-Blum, Maxim ; Yudkovsky, Yana ; Marmen, Sophi ; Raveh, Ofrat ; Amrani, Alon ; Kutuzov, Ilya ; Guy-Haim, Tamar ; Rahav, Eyal</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c362t-4fe7efbc0bc7914422741fd0a1fa0852a381130c04c171c7be5af345fe3545333</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Alkanes - metabolism</topic><topic>Archaea - metabolism</topic><topic>Bacteria - genetics</topic><topic>Biodegradation, Environmental</topic><topic>Hydrocarbons - metabolism</topic><topic>Mediterranean Sea</topic><topic>Nitrogen Fixation</topic><topic>Petroleum Pollution</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Rubin-Blum, Maxim</creatorcontrib><creatorcontrib>Yudkovsky, Yana</creatorcontrib><creatorcontrib>Marmen, Sophi</creatorcontrib><creatorcontrib>Raveh, Ofrat</creatorcontrib><creatorcontrib>Amrani, Alon</creatorcontrib><creatorcontrib>Kutuzov, Ilya</creatorcontrib><creatorcontrib>Guy-Haim, Tamar</creatorcontrib><creatorcontrib>Rahav, Eyal</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Marine pollution bulletin</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Rubin-Blum, Maxim</au><au>Yudkovsky, Yana</au><au>Marmen, Sophi</au><au>Raveh, Ofrat</au><au>Amrani, Alon</au><au>Kutuzov, Ilya</au><au>Guy-Haim, Tamar</au><au>Rahav, Eyal</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Tar patties are hotspots of hydrocarbon turnover and nitrogen fixation during a nearshore pollution event in the oligotrophic southeastern Mediterranean Sea</atitle><jtitle>Marine pollution bulletin</jtitle><addtitle>Mar Pollut Bull</addtitle><date>2023-12</date><risdate>2023</risdate><volume>197</volume><spage>115747</spage><epage>115747</epage><pages>115747-115747</pages><artnum>115747</artnum><issn>0025-326X</issn><eissn>1879-3363</eissn><abstract>Weathered oil, that is, tar, forms hotspots of hydrocarbon degradation by complex biota in marine environment. Here, we used marker gene sequencing and metagenomics to characterize the communities of bacteria, archaea and eukaryotes that colonized tar patties and control samples (wood, plastic), collected in the littoral following an offshore spill in the warm, oligotrophic southeastern Mediterranean Sea (SEMS). We show potential aerobic and anaerobic hydrocarbon catabolism niches on tar interior and exterior, linking carbon, sulfur and nitrogen cycles. Alongside aromatics and larger alkanes, short-chain alkanes appear to fuel dominant populations, both the aerobic clade UBA5335 (Macondimonas), anaerobic Syntropharchaeales, and facultative Mycobacteriales. Most key organisms, including the hydrocarbon degraders and cyanobacteria, have the potential to fix dinitrogen, potentially alleviating the nitrogen limitation of hydrocarbon degradation in the SEMS. We highlight the complexity of these tar-associated communities, where bacteria, archaea and eukaryotes co-exist, likely exchanging metabolites and competing for resources and space.</abstract><cop>England</cop><pmid>37995430</pmid><doi>10.1016/j.marpolbul.2023.115747</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0025-326X |
ispartof | Marine pollution bulletin, 2023-12, Vol.197, p.115747-115747, Article 115747 |
issn | 0025-326X 1879-3363 |
language | eng |
recordid | cdi_proquest_miscellaneous_2893836424 |
source | MEDLINE; Access via ScienceDirect (Elsevier) |
subjects | Alkanes - metabolism Archaea - metabolism Bacteria - genetics Biodegradation, Environmental Hydrocarbons - metabolism Mediterranean Sea Nitrogen Fixation Petroleum Pollution |
title | Tar patties are hotspots of hydrocarbon turnover and nitrogen fixation during a nearshore pollution event in the oligotrophic southeastern Mediterranean Sea |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-25T22%3A40%3A46IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Tar%20patties%20are%20hotspots%20of%20hydrocarbon%20turnover%20and%20nitrogen%20fixation%20during%20a%20nearshore%20pollution%20event%20in%20the%20oligotrophic%20southeastern%20Mediterranean%20Sea&rft.jtitle=Marine%20pollution%20bulletin&rft.au=Rubin-Blum,%20Maxim&rft.date=2023-12&rft.volume=197&rft.spage=115747&rft.epage=115747&rft.pages=115747-115747&rft.artnum=115747&rft.issn=0025-326X&rft.eissn=1879-3363&rft_id=info:doi/10.1016/j.marpolbul.2023.115747&rft_dat=%3Cproquest_cross%3E2893836424%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2893836424&rft_id=info:pmid/37995430&rfr_iscdi=true |