Development of machine learning algorithms for scaling-up antibiotic stewardship
Antibiotic stewardship programs (ASP) aim to reduce inappropriate use of antibiotics, but their labor-intensive nature impedes their wide adoption. The present study introduces explainable machine learning (ML) models designed to prioritize inpatients who would benefit most from stewardship interven...
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Veröffentlicht in: | International journal of medical informatics (Shannon, Ireland) Ireland), 2024-01, Vol.181, p.105300-105300, Article 105300 |
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container_title | International journal of medical informatics (Shannon, Ireland) |
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creator | Tran-The, Tam Heo, Eunjeong Lim, Sanghee Suh, Yewon Heo, Kyu-Nam Lee, Eunkyung Euni Lee, Ho-Young Kim, Eu Suk Lee, Ju-Yeun Jung, Se Young |
description | Antibiotic stewardship programs (ASP) aim to reduce inappropriate use of antibiotics, but their labor-intensive nature impedes their wide adoption. The present study introduces explainable machine learning (ML) models designed to prioritize inpatients who would benefit most from stewardship interventions.
A cohort of inpatients who received systemic antibiotics and were monitored by a multidisciplinary ASP team at a tertiary hospital in the Republic of Korea was assembled. Data encompassing over 130,000 patient-days and comprising more than 160 features from multiple domains, including prescription records, laboratory, microbiology results, and patient conditions was collected.Outcome labels were generated using medication administration history: discontinuation, switching from intravenous to oral medication (IV to PO), and early or late de-escalation. The models were trained using Extreme Gradient Boosting (XGB) and light Gradient Boosting Machine (LGBM), with SHapley Additive exPlanations (SHAP) analysis used to explain the model's predictions.
The models demonstrated strong discrimination when evaluated on a hold-out test set(AUROC - IV to PO: 0.81, Early de-escalation: 0.78, Late de-escalation: 0.72, Discontinue: 0.80). The models identified 41%, 16%, 22%, and 17% more cases requiring discontinuation, IV to PO, early and late de-escalation, respectively, compared to the conventional length of therapy strategy, given that the same number of patients were reviewed by the ASP team. The SHAP results explain how each model makes their predictions, highlighting a unique set of important features that are well-aligned with the clinical intuitions of the ASP team.
The models are expected to improve the efficiency of ASP activities by prioritizing cases that would benefit from different types of ASP interventions along with detailed explanations. |
doi_str_mv | 10.1016/j.ijmedinf.2023.105300 |
format | Article |
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A cohort of inpatients who received systemic antibiotics and were monitored by a multidisciplinary ASP team at a tertiary hospital in the Republic of Korea was assembled. Data encompassing over 130,000 patient-days and comprising more than 160 features from multiple domains, including prescription records, laboratory, microbiology results, and patient conditions was collected.Outcome labels were generated using medication administration history: discontinuation, switching from intravenous to oral medication (IV to PO), and early or late de-escalation. The models were trained using Extreme Gradient Boosting (XGB) and light Gradient Boosting Machine (LGBM), with SHapley Additive exPlanations (SHAP) analysis used to explain the model's predictions.
The models demonstrated strong discrimination when evaluated on a hold-out test set(AUROC - IV to PO: 0.81, Early de-escalation: 0.78, Late de-escalation: 0.72, Discontinue: 0.80). The models identified 41%, 16%, 22%, and 17% more cases requiring discontinuation, IV to PO, early and late de-escalation, respectively, compared to the conventional length of therapy strategy, given that the same number of patients were reviewed by the ASP team. The SHAP results explain how each model makes their predictions, highlighting a unique set of important features that are well-aligned with the clinical intuitions of the ASP team.
The models are expected to improve the efficiency of ASP activities by prioritizing cases that would benefit from different types of ASP interventions along with detailed explanations.</description><identifier>ISSN: 1386-5056</identifier><identifier>EISSN: 1872-8243</identifier><identifier>DOI: 10.1016/j.ijmedinf.2023.105300</identifier><identifier>PMID: 37995386</identifier><language>eng</language><publisher>Ireland</publisher><subject>Anti-Bacterial Agents - therapeutic use ; Antimicrobial Stewardship ; Humans ; Length of Stay ; Republic of Korea ; Tertiary Care Centers</subject><ispartof>International journal of medical informatics (Shannon, Ireland), 2024-01, Vol.181, p.105300-105300, Article 105300</ispartof><rights>Copyright © 2023 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c311t-c9d317f50b6f62333d3a0ac8365082f3b6abf94dffe755b1c4a2d0bbedb95af63</citedby><cites>FETCH-LOGICAL-c311t-c9d317f50b6f62333d3a0ac8365082f3b6abf94dffe755b1c4a2d0bbedb95af63</cites><orcidid>0000-0002-2261-7330 ; 0000-0002-9244-3145 ; 0000-0003-3626-3999 ; 0000-0001-6518-0602</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37995386$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tran-The, Tam</creatorcontrib><creatorcontrib>Heo, Eunjeong</creatorcontrib><creatorcontrib>Lim, Sanghee</creatorcontrib><creatorcontrib>Suh, Yewon</creatorcontrib><creatorcontrib>Heo, Kyu-Nam</creatorcontrib><creatorcontrib>Lee, Eunkyung Euni</creatorcontrib><creatorcontrib>Lee, Ho-Young</creatorcontrib><creatorcontrib>Kim, Eu Suk</creatorcontrib><creatorcontrib>Lee, Ju-Yeun</creatorcontrib><creatorcontrib>Jung, Se Young</creatorcontrib><title>Development of machine learning algorithms for scaling-up antibiotic stewardship</title><title>International journal of medical informatics (Shannon, Ireland)</title><addtitle>Int J Med Inform</addtitle><description>Antibiotic stewardship programs (ASP) aim to reduce inappropriate use of antibiotics, but their labor-intensive nature impedes their wide adoption. The present study introduces explainable machine learning (ML) models designed to prioritize inpatients who would benefit most from stewardship interventions.
A cohort of inpatients who received systemic antibiotics and were monitored by a multidisciplinary ASP team at a tertiary hospital in the Republic of Korea was assembled. Data encompassing over 130,000 patient-days and comprising more than 160 features from multiple domains, including prescription records, laboratory, microbiology results, and patient conditions was collected.Outcome labels were generated using medication administration history: discontinuation, switching from intravenous to oral medication (IV to PO), and early or late de-escalation. The models were trained using Extreme Gradient Boosting (XGB) and light Gradient Boosting Machine (LGBM), with SHapley Additive exPlanations (SHAP) analysis used to explain the model's predictions.
The models demonstrated strong discrimination when evaluated on a hold-out test set(AUROC - IV to PO: 0.81, Early de-escalation: 0.78, Late de-escalation: 0.72, Discontinue: 0.80). The models identified 41%, 16%, 22%, and 17% more cases requiring discontinuation, IV to PO, early and late de-escalation, respectively, compared to the conventional length of therapy strategy, given that the same number of patients were reviewed by the ASP team. The SHAP results explain how each model makes their predictions, highlighting a unique set of important features that are well-aligned with the clinical intuitions of the ASP team.
The models are expected to improve the efficiency of ASP activities by prioritizing cases that would benefit from different types of ASP interventions along with detailed explanations.</description><subject>Anti-Bacterial Agents - therapeutic use</subject><subject>Antimicrobial Stewardship</subject><subject>Humans</subject><subject>Length of Stay</subject><subject>Republic of Korea</subject><subject>Tertiary Care Centers</subject><issn>1386-5056</issn><issn>1872-8243</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kEtPwzAQhC0EoqXwFyofuaT4ETvJEZWnVAkOcLZsx24dJXGwExD_HldtOe1qZmdW-gBYYrTCCPO7ZuWaztSutyuCCE0iowidgTkuC5KVJKfnaaclzxhifAauYmwQwgVi-SWY0aKqWDLn4P3BfJvWD53pR-gt7KTeud7A1sjQu34LZbv1wY27LkLrA4xatknOpgHKfnTK-dFpGEfzI0Mdd264BhdWttHcHOcCfD49fqxfss3b8-v6fpNpivGY6aqmuLAMKW45oZTWVCKpS8oZKomliktlq7y21hSMKaxzSWqklKlVxaTldAFuD71D8F-TiaPoXNSmbWVv_BQFKSua2vLEZQH44VQHH2MwVgzBdTL8CozEnqZoxImm2NMUB5opuDz-mFSy_2MnfPQP-KN1Mw</recordid><startdate>202401</startdate><enddate>202401</enddate><creator>Tran-The, Tam</creator><creator>Heo, Eunjeong</creator><creator>Lim, Sanghee</creator><creator>Suh, Yewon</creator><creator>Heo, Kyu-Nam</creator><creator>Lee, Eunkyung Euni</creator><creator>Lee, Ho-Young</creator><creator>Kim, Eu Suk</creator><creator>Lee, Ju-Yeun</creator><creator>Jung, Se Young</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-2261-7330</orcidid><orcidid>https://orcid.org/0000-0002-9244-3145</orcidid><orcidid>https://orcid.org/0000-0003-3626-3999</orcidid><orcidid>https://orcid.org/0000-0001-6518-0602</orcidid></search><sort><creationdate>202401</creationdate><title>Development of machine learning algorithms for scaling-up antibiotic stewardship</title><author>Tran-The, Tam ; Heo, Eunjeong ; Lim, Sanghee ; Suh, Yewon ; Heo, Kyu-Nam ; Lee, Eunkyung Euni ; Lee, Ho-Young ; Kim, Eu Suk ; Lee, Ju-Yeun ; Jung, Se Young</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c311t-c9d317f50b6f62333d3a0ac8365082f3b6abf94dffe755b1c4a2d0bbedb95af63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Anti-Bacterial Agents - therapeutic use</topic><topic>Antimicrobial Stewardship</topic><topic>Humans</topic><topic>Length of Stay</topic><topic>Republic of Korea</topic><topic>Tertiary Care Centers</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tran-The, Tam</creatorcontrib><creatorcontrib>Heo, Eunjeong</creatorcontrib><creatorcontrib>Lim, Sanghee</creatorcontrib><creatorcontrib>Suh, Yewon</creatorcontrib><creatorcontrib>Heo, Kyu-Nam</creatorcontrib><creatorcontrib>Lee, Eunkyung Euni</creatorcontrib><creatorcontrib>Lee, Ho-Young</creatorcontrib><creatorcontrib>Kim, Eu Suk</creatorcontrib><creatorcontrib>Lee, Ju-Yeun</creatorcontrib><creatorcontrib>Jung, Se Young</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of medical informatics (Shannon, Ireland)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tran-The, Tam</au><au>Heo, Eunjeong</au><au>Lim, Sanghee</au><au>Suh, Yewon</au><au>Heo, Kyu-Nam</au><au>Lee, Eunkyung Euni</au><au>Lee, Ho-Young</au><au>Kim, Eu Suk</au><au>Lee, Ju-Yeun</au><au>Jung, Se Young</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Development of machine learning algorithms for scaling-up antibiotic stewardship</atitle><jtitle>International journal of medical informatics (Shannon, Ireland)</jtitle><addtitle>Int J Med Inform</addtitle><date>2024-01</date><risdate>2024</risdate><volume>181</volume><spage>105300</spage><epage>105300</epage><pages>105300-105300</pages><artnum>105300</artnum><issn>1386-5056</issn><eissn>1872-8243</eissn><abstract>Antibiotic stewardship programs (ASP) aim to reduce inappropriate use of antibiotics, but their labor-intensive nature impedes their wide adoption. The present study introduces explainable machine learning (ML) models designed to prioritize inpatients who would benefit most from stewardship interventions.
A cohort of inpatients who received systemic antibiotics and were monitored by a multidisciplinary ASP team at a tertiary hospital in the Republic of Korea was assembled. Data encompassing over 130,000 patient-days and comprising more than 160 features from multiple domains, including prescription records, laboratory, microbiology results, and patient conditions was collected.Outcome labels were generated using medication administration history: discontinuation, switching from intravenous to oral medication (IV to PO), and early or late de-escalation. The models were trained using Extreme Gradient Boosting (XGB) and light Gradient Boosting Machine (LGBM), with SHapley Additive exPlanations (SHAP) analysis used to explain the model's predictions.
The models demonstrated strong discrimination when evaluated on a hold-out test set(AUROC - IV to PO: 0.81, Early de-escalation: 0.78, Late de-escalation: 0.72, Discontinue: 0.80). The models identified 41%, 16%, 22%, and 17% more cases requiring discontinuation, IV to PO, early and late de-escalation, respectively, compared to the conventional length of therapy strategy, given that the same number of patients were reviewed by the ASP team. The SHAP results explain how each model makes their predictions, highlighting a unique set of important features that are well-aligned with the clinical intuitions of the ASP team.
The models are expected to improve the efficiency of ASP activities by prioritizing cases that would benefit from different types of ASP interventions along with detailed explanations.</abstract><cop>Ireland</cop><pmid>37995386</pmid><doi>10.1016/j.ijmedinf.2023.105300</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-2261-7330</orcidid><orcidid>https://orcid.org/0000-0002-9244-3145</orcidid><orcidid>https://orcid.org/0000-0003-3626-3999</orcidid><orcidid>https://orcid.org/0000-0001-6518-0602</orcidid></addata></record> |
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subjects | Anti-Bacterial Agents - therapeutic use Antimicrobial Stewardship Humans Length of Stay Republic of Korea Tertiary Care Centers |
title | Development of machine learning algorithms for scaling-up antibiotic stewardship |
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