Characterization of the complete mitochondrial genome of Acanthogyrus (Acanthosentis) bilaspurensis Chowhan, Gupta & Khera, 1987 (Eoacanthocephala: Quadrigyridae), the smallest mitochondrial genome in Acanthocephala, and its phylogenetic implications
The phylum Acanthocephala is an important group of parasites with more than 1,300 species parasitizing intestine of all major vertebrate groups. However, our present knowledge of the mitochondrial genomes of Acanthocephala remains very limited. In the present study, we sequenced and annotated the co...
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| Veröffentlicht in: | Journal of helminthology 2023-11, Vol.97, p.e87-e87, Article e87 |
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| creator | Muhammad, Nehaz Li, D.-X. Ru, S.-S. Suleman Saood, D. Alvi, M.A. Li, L. |
| description | The phylum Acanthocephala is an important group of parasites with more than 1,300 species parasitizing intestine of all major vertebrate groups. However, our present knowledge of the mitochondrial genomes of Acanthocephala remains very limited. In the present study, we sequenced and annotated the complete mitochondrial genome of Acanthogyrus (Acanthosentis) bilaspurensis (Gyracanthocephala: Quadrigyridae) for the first time based on the specimens recovered from the intestine of common carp Cyprinus carpio Linnaeus (Cyprinidae) in Pakistan. The mitochondrial genome of A. bilaspurensis is 13,360 bp in size and contains 36 genes, representing the smallest mitogenome of acanthocephalans reported so far. The mitogenome of A. bilaspurensis also has the lowest level of overall A+T contents (59.3%) in the mitogenomes of Eoacanthocephala, and the non-coding region 3 (NCR3) lies between trnS2 and trnI, which is different from all of the other acanthocephalan species. Phylogenetic analyses based on concatenating the amino acid sequences of 12 protein-coding genes using maximum likelihood (ML) and Bayesian inference (BI) methods revealed that the family Pseudoacanthocephalidae is a sister to the Arhythmacanthidae rather than the Cavisomatidae, and the families Rhadinorhynchidae and Cavisomatidae showed sister relationships. |
| doi_str_mv | 10.1017/S0022149X23000561 |
| format | Article |
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However, our present knowledge of the mitochondrial genomes of Acanthocephala remains very limited. In the present study, we sequenced and annotated the complete mitochondrial genome of Acanthogyrus (Acanthosentis) bilaspurensis (Gyracanthocephala: Quadrigyridae) for the first time based on the specimens recovered from the intestine of common carp Cyprinus carpio Linnaeus (Cyprinidae) in Pakistan. The mitochondrial genome of A. bilaspurensis is 13,360 bp in size and contains 36 genes, representing the smallest mitogenome of acanthocephalans reported so far. The mitogenome of A. bilaspurensis also has the lowest level of overall A+T contents (59.3%) in the mitogenomes of Eoacanthocephala, and the non-coding region 3 (NCR3) lies between trnS2 and trnI, which is different from all of the other acanthocephalan species. Phylogenetic analyses based on concatenating the amino acid sequences of 12 protein-coding genes using maximum likelihood (ML) and Bayesian inference (BI) methods revealed that the family Pseudoacanthocephalidae is a sister to the Arhythmacanthidae rather than the Cavisomatidae, and the families Rhadinorhynchidae and Cavisomatidae showed sister relationships.</description><identifier>ISSN: 0022-149X</identifier><identifier>EISSN: 1475-2697</identifier><identifier>DOI: 10.1017/S0022149X23000561</identifier><identifier>PMID: 37969070</identifier><language>eng</language><publisher>Cambridge, UK: Cambridge University Press</publisher><subject>Acanthocephala ; Acanthocephala - genetics ; Acanthogyrus ; Acanthosentis ; Amino acid sequences ; Amino acids ; Animals ; Bats ; Bayes Theorem ; Bayesian analysis ; Carps ; Cyprinus carpio ; DNA ; Eoacanthocephala ; Genes ; Genome, Mitochondrial ; Genomes ; Humans ; Intestine ; Intestines ; Mitochondria ; Mitochondrial DNA ; Parasites ; Phylogenetics ; Phylogeny ; Probability theory ; Proteins ; Quadrigyridae ; Research Paper ; Statistical inference ; Transfer RNA ; Vertebrates ; Worms</subject><ispartof>Journal of helminthology, 2023-11, Vol.97, p.e87-e87, Article e87</ispartof><rights>The Author(s), 2023. Published by Cambridge University Press</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c325t-92ddd9d084125888f45e96c41d036bad0d061b11a05cf9a4036f10125bf7797d3</cites><orcidid>0000-0003-2338-1099 ; 0000-0003-4569-5013</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.cambridge.org/core/product/identifier/S0022149X23000561/type/journal_article$$EHTML$$P50$$Gcambridge$$H</linktohtml><link.rule.ids>164,314,776,780,27901,27902,55603</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37969070$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Muhammad, Nehaz</creatorcontrib><creatorcontrib>Li, D.-X.</creatorcontrib><creatorcontrib>Ru, S.-S.</creatorcontrib><creatorcontrib>Suleman</creatorcontrib><creatorcontrib>Saood, D.</creatorcontrib><creatorcontrib>Alvi, M.A.</creatorcontrib><creatorcontrib>Li, L.</creatorcontrib><title>Characterization of the complete mitochondrial genome of Acanthogyrus (Acanthosentis) bilaspurensis Chowhan, Gupta & Khera, 1987 (Eoacanthocephala: Quadrigyridae), the smallest mitochondrial genome in Acanthocephala, and its phylogenetic implications</title><title>Journal of helminthology</title><addtitle>J. Helminthol</addtitle><description>The phylum Acanthocephala is an important group of parasites with more than 1,300 species parasitizing intestine of all major vertebrate groups. However, our present knowledge of the mitochondrial genomes of Acanthocephala remains very limited. In the present study, we sequenced and annotated the complete mitochondrial genome of Acanthogyrus (Acanthosentis) bilaspurensis (Gyracanthocephala: Quadrigyridae) for the first time based on the specimens recovered from the intestine of common carp Cyprinus carpio Linnaeus (Cyprinidae) in Pakistan. The mitochondrial genome of A. bilaspurensis is 13,360 bp in size and contains 36 genes, representing the smallest mitogenome of acanthocephalans reported so far. The mitogenome of A. bilaspurensis also has the lowest level of overall A+T contents (59.3%) in the mitogenomes of Eoacanthocephala, and the non-coding region 3 (NCR3) lies between trnS2 and trnI, which is different from all of the other acanthocephalan species. Phylogenetic analyses based on concatenating the amino acid sequences of 12 protein-coding genes using maximum likelihood (ML) and Bayesian inference (BI) methods revealed that the family Pseudoacanthocephalidae is a sister to the Arhythmacanthidae rather than the Cavisomatidae, and the families Rhadinorhynchidae and Cavisomatidae showed sister relationships.</description><subject>Acanthocephala</subject><subject>Acanthocephala - genetics</subject><subject>Acanthogyrus</subject><subject>Acanthosentis</subject><subject>Amino acid sequences</subject><subject>Amino acids</subject><subject>Animals</subject><subject>Bats</subject><subject>Bayes Theorem</subject><subject>Bayesian analysis</subject><subject>Carps</subject><subject>Cyprinus carpio</subject><subject>DNA</subject><subject>Eoacanthocephala</subject><subject>Genes</subject><subject>Genome, Mitochondrial</subject><subject>Genomes</subject><subject>Humans</subject><subject>Intestine</subject><subject>Intestines</subject><subject>Mitochondria</subject><subject>Mitochondrial DNA</subject><subject>Parasites</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Probability theory</subject><subject>Proteins</subject><subject>Quadrigyridae</subject><subject>Research Paper</subject><subject>Statistical inference</subject><subject>Transfer RNA</subject><subject>Vertebrates</subject><subject>Worms</subject><issn>0022-149X</issn><issn>1475-2697</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp1kk2LFDEQhoMo7rj6A7xIQJBZmNEk_Rlvy7Cu4oKICt6a6iQ9nSWd9CZpZPan78nMTK-CH6eQ1FNvvVUphJ5T8poSWr35QghjNOffWUYIKUr6AC1oXhVrVvLqIVrsw-t9_AQ9CeE6MRllxWN0klW85KQiC3S36cGDiMrrW4jaWew6HHuFhRtGo6LCg45O9M5Kr8HgrbJuUHvoXICNvdvu_BTwcr4FZaMOZ7jVBsI4eWWDDnjTux892BW-nMYI-BX-2CsPK0x5XeHlhYNjslBjDwbe4s8TpGpJWUtQZ6uDnzCAMSrEf_vR9t7PLLLCYCXWMeCx3xmXMBW1wDo1pcWh0fAUPerABPVsPk_Rt3cXXzfv11efLj9szq_WImNFXHMmpeSS1HmaXV3XXV4oXoqcSpKVLUgiSUlbSoEUouOQp9cu_Q4r2q6qeCWzU7Q86o7e3UyphWbQQShjwCo3hYbV6SuKmhZ5Ql_-gV67ydvk7kCxnBaUJYoeKeFdCF51zej1AH7XUNLsF6P5azFSzotZeWoHJX9l3G9CArJZFIY2DX6rftf-v-xPmgzHMg</recordid><startdate>20231116</startdate><enddate>20231116</enddate><creator>Muhammad, Nehaz</creator><creator>Li, D.-X.</creator><creator>Ru, S.-S.</creator><creator>Suleman</creator><creator>Saood, D.</creator><creator>Alvi, M.A.</creator><creator>Li, L.</creator><general>Cambridge University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QG</scope><scope>7SN</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8C1</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>H95</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>L.G</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-2338-1099</orcidid><orcidid>https://orcid.org/0000-0003-4569-5013</orcidid></search><sort><creationdate>20231116</creationdate><title>Characterization of the complete mitochondrial genome of Acanthogyrus (Acanthosentis) bilaspurensis Chowhan, Gupta & Khera, 1987 (Eoacanthocephala: Quadrigyridae), the smallest mitochondrial genome in Acanthocephala, and its phylogenetic implications</title><author>Muhammad, Nehaz ; 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Helminthol</addtitle><date>2023-11-16</date><risdate>2023</risdate><volume>97</volume><spage>e87</spage><epage>e87</epage><pages>e87-e87</pages><artnum>e87</artnum><issn>0022-149X</issn><eissn>1475-2697</eissn><abstract>The phylum Acanthocephala is an important group of parasites with more than 1,300 species parasitizing intestine of all major vertebrate groups. However, our present knowledge of the mitochondrial genomes of Acanthocephala remains very limited. In the present study, we sequenced and annotated the complete mitochondrial genome of Acanthogyrus (Acanthosentis) bilaspurensis (Gyracanthocephala: Quadrigyridae) for the first time based on the specimens recovered from the intestine of common carp Cyprinus carpio Linnaeus (Cyprinidae) in Pakistan. The mitochondrial genome of A. bilaspurensis is 13,360 bp in size and contains 36 genes, representing the smallest mitogenome of acanthocephalans reported so far. The mitogenome of A. bilaspurensis also has the lowest level of overall A+T contents (59.3%) in the mitogenomes of Eoacanthocephala, and the non-coding region 3 (NCR3) lies between trnS2 and trnI, which is different from all of the other acanthocephalan species. Phylogenetic analyses based on concatenating the amino acid sequences of 12 protein-coding genes using maximum likelihood (ML) and Bayesian inference (BI) methods revealed that the family Pseudoacanthocephalidae is a sister to the Arhythmacanthidae rather than the Cavisomatidae, and the families Rhadinorhynchidae and Cavisomatidae showed sister relationships.</abstract><cop>Cambridge, UK</cop><pub>Cambridge University Press</pub><pmid>37969070</pmid><doi>10.1017/S0022149X23000561</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0003-2338-1099</orcidid><orcidid>https://orcid.org/0000-0003-4569-5013</orcidid></addata></record> |
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| source | Cambridge Core; MEDLINE |
| subjects | Acanthocephala Acanthocephala - genetics Acanthogyrus Acanthosentis Amino acid sequences Amino acids Animals Bats Bayes Theorem Bayesian analysis Carps Cyprinus carpio DNA Eoacanthocephala Genes Genome, Mitochondrial Genomes Humans Intestine Intestines Mitochondria Mitochondrial DNA Parasites Phylogenetics Phylogeny Probability theory Proteins Quadrigyridae Research Paper Statistical inference Transfer RNA Vertebrates Worms |
| title | Characterization of the complete mitochondrial genome of Acanthogyrus (Acanthosentis) bilaspurensis Chowhan, Gupta & Khera, 1987 (Eoacanthocephala: Quadrigyridae), the smallest mitochondrial genome in Acanthocephala, and its phylogenetic implications |
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