The Validity of the Poisson Distribution to Analyze Microbial Colony Counts on Agar Plates for Food Samples
Microbial colony counts of food samples in microbiological examinations are one of the most important items. The probability distributions for the colony counts per agar plate at the dilution of counting had not been intensively studied so far. Recently we analyzed the colony counts of food samples...
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description | Microbial colony counts of food samples in microbiological examinations are one of the most important items. The probability distributions for the colony counts per agar plate at the dilution of counting had not been intensively studied so far. Recently we analyzed the colony counts of food samples with several probability distributions using the Pearson’s chi-square value by the “traditional” statistics as the index of fit [Fujikawa and Tsubaki, Food Hyg.Saf.Sc., 60, 88–95 (2019)]. As a result, the selected probability distributions depended on the samples. In this study we newly selected a probability distribution, namely a statistical model, suitable for the above data with the method of maximum likelihood from the probabilistic point of view. The Akaike’s Information Criterion (AIC) was used as the index of fit. Consequently, the Poisson model were better than the negative binomial model for all of four food samples. The Poisson model was also better than the binomial for three of four microbial culture samples. With Baysian Information Criterion (BIC), the Poisson model was also better than these two models for all the samples. These results suggested that the Poisson distribution would be the best model to estimate the colony counts of food samples. The present study would be the first report on the statistical model selection for the colony counts of food samples with AIC and BIC. |
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The probability distributions for the colony counts per agar plate at the dilution of counting had not been intensively studied so far. Recently we analyzed the colony counts of food samples with several probability distributions using the Pearson’s chi-square value by the “traditional” statistics as the index of fit [Fujikawa and Tsubaki, Food Hyg.Saf.Sc., 60, 88–95 (2019)]. As a result, the selected probability distributions depended on the samples. In this study we newly selected a probability distribution, namely a statistical model, suitable for the above data with the method of maximum likelihood from the probabilistic point of view. The Akaike’s Information Criterion (AIC) was used as the index of fit. Consequently, the Poisson model were better than the negative binomial model for all of four food samples. The Poisson model was also better than the binomial for three of four microbial culture samples. With Baysian Information Criterion (BIC), the Poisson model was also better than these two models for all the samples. These results suggested that the Poisson distribution would be the best model to estimate the colony counts of food samples. The present study would be the first report on the statistical model selection for the colony counts of food samples with AIC and BIC.</description><identifier>ISSN: 0015-6426</identifier><identifier>EISSN: 1882-1006</identifier><identifier>DOI: 10.3358/shokueishi.64.174</identifier><identifier>PMID: 37880096</identifier><language>eng ; jpn</language><publisher>Japan: Japanese Society for Food Hygiene and Safety</publisher><subject>Agar ; Akaike Information Criterion ; Baysian Information Criterion ; binomial distribution ; Chi-square test ; Colonies ; Colony Count, Microbial ; colony counts ; Counting ; Criteria ; Dilution ; Distribution ; Food ; Foods ; Mathematical models ; maximum likelihood estimation ; Microorganisms ; Models, Statistical ; negative binomial distribution ; Normal distribution ; Pearson distributions ; Poisson Distribution ; Probability distribution ; Probability theory ; Samples ; Statistical analysis ; Statistical models</subject><ispartof>Food Hygiene and Safety Science (Shokuhin Eiseigaku Zasshi), 2023/10/25, Vol.64(5), pp.174-178</ispartof><rights>2023 Japanese Society for Food Hygiene and Safety</rights><rights>Copyright Japan Science and Technology Agency 2023</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c372t-fec5196a2e2e5b00a0b5886d5855b38310d8f8b8608607fcca7d923435bc6fcc3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37880096$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fujikawa, Hiroshi</creatorcontrib><creatorcontrib>Laboratory of Veterinary Public Health</creatorcontrib><creatorcontrib>Tokyo University of Agriculture and Technology</creatorcontrib><creatorcontrib>Faculty of Agriculture</creatorcontrib><title>The Validity of the Poisson Distribution to Analyze Microbial Colony Counts on Agar Plates for Food Samples</title><title>Food Hygiene and Safety Science (Shokuhin Eiseigaku Zasshi)</title><addtitle>Food Hyg. Saf. Sci.</addtitle><description>Microbial colony counts of food samples in microbiological examinations are one of the most important items. The probability distributions for the colony counts per agar plate at the dilution of counting had not been intensively studied so far. Recently we analyzed the colony counts of food samples with several probability distributions using the Pearson’s chi-square value by the “traditional” statistics as the index of fit [Fujikawa and Tsubaki, Food Hyg.Saf.Sc., 60, 88–95 (2019)]. As a result, the selected probability distributions depended on the samples. In this study we newly selected a probability distribution, namely a statistical model, suitable for the above data with the method of maximum likelihood from the probabilistic point of view. The Akaike’s Information Criterion (AIC) was used as the index of fit. Consequently, the Poisson model were better than the negative binomial model for all of four food samples. The Poisson model was also better than the binomial for three of four microbial culture samples. With Baysian Information Criterion (BIC), the Poisson model was also better than these two models for all the samples. These results suggested that the Poisson distribution would be the best model to estimate the colony counts of food samples. The present study would be the first report on the statistical model selection for the colony counts of food samples with AIC and BIC.</description><subject>Agar</subject><subject>Akaike Information Criterion</subject><subject>Baysian Information Criterion</subject><subject>binomial distribution</subject><subject>Chi-square test</subject><subject>Colonies</subject><subject>Colony Count, Microbial</subject><subject>colony counts</subject><subject>Counting</subject><subject>Criteria</subject><subject>Dilution</subject><subject>Distribution</subject><subject>Food</subject><subject>Foods</subject><subject>Mathematical models</subject><subject>maximum likelihood estimation</subject><subject>Microorganisms</subject><subject>Models, Statistical</subject><subject>negative binomial distribution</subject><subject>Normal distribution</subject><subject>Pearson distributions</subject><subject>Poisson Distribution</subject><subject>Probability distribution</subject><subject>Probability theory</subject><subject>Samples</subject><subject>Statistical analysis</subject><subject>Statistical models</subject><issn>0015-6426</issn><issn>1882-1006</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdUU1vEzEQtRCIRqU_gAuyxIXLBn-sP_YYpbQgFVGJwtXyer2NW2cdbO8h_HqmSkilSpZHT_PmzcwbhN5TsuRc6M9lkx5nH8omLGW7pKp9hRZUa9ZQQuRrtCCEika2TJ6hi1JCTwjpFOOMvUVnXGkNUC7Q493G4982hiHUPU4jroBvUyglTfgylJpDP9cAoCa8mmzc__X4e3A59cFGvE4xTXsI81QLBtbq3mZ8G231BY8p46uUBvzTbnfRl3fozWhj8RfHeI5-XX25W39tbn5cf1uvbhrHFavN6J2gnbTMMy9gbEt6obUchBai55pTMuhR91oSeGp0zqqhY7zloncSID9Hnw66u5z-zL5Usw3F-Rjt5NNcDAOXOOPgIlA_vqA-pDnDmsDqaNsqxSUBFj2wYO1Ssh_NLoetzXtDiXk6hnk-hpGtgWNAzYej8txv_XCq-G89EK4PBMgGZ8HHGCb_3N8nMYJ5G8MI4wZu2hIBgRkC8k9f1zJNlVagdHlQeijV3vtTK5trcNG_GE4cJzyl3cZm4yf-D53Kt2A</recordid><startdate>20231025</startdate><enddate>20231025</enddate><creator>Fujikawa, Hiroshi</creator><general>Japanese Society for Food Hygiene and Safety</general><general>Japan Science and Technology Agency</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7T2</scope><scope>7T7</scope><scope>7U7</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>H96</scope><scope>H97</scope><scope>H98</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>20231025</creationdate><title>The Validity of the Poisson Distribution to Analyze Microbial Colony Counts on Agar Plates for Food Samples</title><author>Fujikawa, Hiroshi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c372t-fec5196a2e2e5b00a0b5886d5855b38310d8f8b8608607fcca7d923435bc6fcc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng ; jpn</language><creationdate>2023</creationdate><topic>Agar</topic><topic>Akaike Information Criterion</topic><topic>Baysian Information Criterion</topic><topic>binomial distribution</topic><topic>Chi-square test</topic><topic>Colonies</topic><topic>Colony Count, Microbial</topic><topic>colony counts</topic><topic>Counting</topic><topic>Criteria</topic><topic>Dilution</topic><topic>Distribution</topic><topic>Food</topic><topic>Foods</topic><topic>Mathematical models</topic><topic>maximum likelihood estimation</topic><topic>Microorganisms</topic><topic>Models, Statistical</topic><topic>negative binomial distribution</topic><topic>Normal distribution</topic><topic>Pearson distributions</topic><topic>Poisson Distribution</topic><topic>Probability distribution</topic><topic>Probability theory</topic><topic>Samples</topic><topic>Statistical analysis</topic><topic>Statistical models</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fujikawa, Hiroshi</creatorcontrib><creatorcontrib>Laboratory of Veterinary Public Health</creatorcontrib><creatorcontrib>Tokyo University of Agriculture and Technology</creatorcontrib><creatorcontrib>Faculty of Agriculture</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Health and Safety Science Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Toxicology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 2: Ocean Technology, Policy & Non-Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 3: Aquatic Pollution & Environmental Quality</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Aquaculture Abstracts</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Food Hygiene and Safety Science (Shokuhin Eiseigaku Zasshi)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fujikawa, Hiroshi</au><aucorp>Laboratory of Veterinary Public Health</aucorp><aucorp>Tokyo University of Agriculture and Technology</aucorp><aucorp>Faculty of Agriculture</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The Validity of the Poisson Distribution to Analyze Microbial Colony Counts on Agar Plates for Food Samples</atitle><jtitle>Food Hygiene and Safety Science (Shokuhin Eiseigaku Zasshi)</jtitle><addtitle>Food Hyg. 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subjects | Agar Akaike Information Criterion Baysian Information Criterion binomial distribution Chi-square test Colonies Colony Count, Microbial colony counts Counting Criteria Dilution Distribution Food Foods Mathematical models maximum likelihood estimation Microorganisms Models, Statistical negative binomial distribution Normal distribution Pearson distributions Poisson Distribution Probability distribution Probability theory Samples Statistical analysis Statistical models |
title | The Validity of the Poisson Distribution to Analyze Microbial Colony Counts on Agar Plates for Food Samples |
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