Succession of Fungal Communities and Their Functional Profiles in a Decaying Foundation Species
Dead plant biomass from foundation plant species is fundamental for the survival of coastal salt marshes because dead biomass aids in the vertical accretion of the ecosystem. Fungi regulate the decomposition of dead biomass, and thus play an essential role for marsh survival. Despite their importanc...
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| Veröffentlicht in: | Microbial ecology 2023-11, Vol.86 (4), p.3003-3012 |
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| creator | Rippel, Tyler M. Wimp, Gina M. |
| description | Dead plant biomass from foundation plant species is fundamental for the survival of coastal salt marshes because dead biomass aids in the vertical accretion of the ecosystem. Fungi regulate the decomposition of dead biomass, and thus play an essential role for marsh survival. Despite their importance, little is known about the compositional and functional changes of fungal communities in plant matter throughout senescence and litter decomposition. Here, we analyzed how fungal communities and their functionality change in the foundation plant species
Spartina patens
, which builds vast amounts of dead plant biomass (thatch) on the soil surface. We analyzed the chemical and fungal properties of live biomass, standing dead biomass (dead biomass shortly after senescence), upper thatch (top layer of litter on the soil surface), and lower thatch (bottom layer of litter on the soil surface) during September and November of 2021. We found that the chemical and fungal properties of different
S. patens
biomass types followed a predictable litter decomposition pattern. Notably, live biomass, standing dead biomass, upper thatch, and lower thatch all hosted unique fungal communities and litter chemistry. Functional groups present in live biomass (pathogens, epiphytes, and mycoparasites) were lost during senescence and later replaced by diverse saprotrophs. The abundance of lignocellulose saprotrophs increased throughout decomposition, with the highest abundance occurring in lower thatch. These results suggest a predictable succession of fungal communities through the senescence and decomposition of the foundation species
S. patens
. Our study highlights the diversity of fungal communities in a disappearing foundation species. |
| doi_str_mv | 10.1007/s00248-023-02306-7 |
| format | Article |
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Spartina patens
, which builds vast amounts of dead plant biomass (thatch) on the soil surface. We analyzed the chemical and fungal properties of live biomass, standing dead biomass (dead biomass shortly after senescence), upper thatch (top layer of litter on the soil surface), and lower thatch (bottom layer of litter on the soil surface) during September and November of 2021. We found that the chemical and fungal properties of different
S. patens
biomass types followed a predictable litter decomposition pattern. Notably, live biomass, standing dead biomass, upper thatch, and lower thatch all hosted unique fungal communities and litter chemistry. Functional groups present in live biomass (pathogens, epiphytes, and mycoparasites) were lost during senescence and later replaced by diverse saprotrophs. The abundance of lignocellulose saprotrophs increased throughout decomposition, with the highest abundance occurring in lower thatch. These results suggest a predictable succession of fungal communities through the senescence and decomposition of the foundation species
S. patens
. Our study highlights the diversity of fungal communities in a disappearing foundation species.</description><identifier>ISSN: 0095-3628</identifier><identifier>EISSN: 1432-184X</identifier><identifier>DOI: 10.1007/s00248-023-02306-7</identifier><identifier>PMID: 37792090</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Abundance ; Accretion ; Aquatic plants ; Biomass ; Biomedical and Life Sciences ; chemistry ; Decomposition ; Deposition ; Ecology ; Ecosystem ; ecosystems ; Epiphytes ; Flowers & plants ; Functional groups ; Fungi ; Fungi - physiology ; Geoecology/Natural Processes ; Life Sciences ; Lignocellulose ; Litter ; marshes ; Microbial Ecology ; Microbiology ; Mycobiome ; mycoparasites ; Nature Conservation ; Pathogens ; phytomass ; Plant biomass ; Plant communities ; Plant Leaves - microbiology ; Plant species ; Plants ; Saltmarshes ; saprotrophs ; Senescence ; Soil ; Soil analysis ; Soil Microbiology ; Soil surfaces ; Soils ; Spartina ; Species ; Survival ; thatch ; Water Quality/Water Pollution</subject><ispartof>Microbial ecology, 2023-11, Vol.86 (4), p.3003-3012</ispartof><rights>This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023</rights><rights>2023. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.</rights><rights>This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c408t-89014c38c5407c8da760815ec8c3d2da44fcef555f9e1d36e8fd0e69af423f193</citedby><cites>FETCH-LOGICAL-c408t-89014c38c5407c8da760815ec8c3d2da44fcef555f9e1d36e8fd0e69af423f193</cites><orcidid>0000-0002-4412-246X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00248-023-02306-7$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00248-023-02306-7$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27915,27916,41479,42548,51310</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37792090$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Rippel, Tyler M.</creatorcontrib><creatorcontrib>Wimp, Gina M.</creatorcontrib><title>Succession of Fungal Communities and Their Functional Profiles in a Decaying Foundation Species</title><title>Microbial ecology</title><addtitle>Microb Ecol</addtitle><addtitle>Microb Ecol</addtitle><description>Dead plant biomass from foundation plant species is fundamental for the survival of coastal salt marshes because dead biomass aids in the vertical accretion of the ecosystem. Fungi regulate the decomposition of dead biomass, and thus play an essential role for marsh survival. Despite their importance, little is known about the compositional and functional changes of fungal communities in plant matter throughout senescence and litter decomposition. Here, we analyzed how fungal communities and their functionality change in the foundation plant species
Spartina patens
, which builds vast amounts of dead plant biomass (thatch) on the soil surface. We analyzed the chemical and fungal properties of live biomass, standing dead biomass (dead biomass shortly after senescence), upper thatch (top layer of litter on the soil surface), and lower thatch (bottom layer of litter on the soil surface) during September and November of 2021. We found that the chemical and fungal properties of different
S. patens
biomass types followed a predictable litter decomposition pattern. Notably, live biomass, standing dead biomass, upper thatch, and lower thatch all hosted unique fungal communities and litter chemistry. Functional groups present in live biomass (pathogens, epiphytes, and mycoparasites) were lost during senescence and later replaced by diverse saprotrophs. The abundance of lignocellulose saprotrophs increased throughout decomposition, with the highest abundance occurring in lower thatch. These results suggest a predictable succession of fungal communities through the senescence and decomposition of the foundation species
S. patens
. Our study highlights the diversity of fungal communities in a disappearing foundation species.</description><subject>Abundance</subject><subject>Accretion</subject><subject>Aquatic plants</subject><subject>Biomass</subject><subject>Biomedical and Life Sciences</subject><subject>chemistry</subject><subject>Decomposition</subject><subject>Deposition</subject><subject>Ecology</subject><subject>Ecosystem</subject><subject>ecosystems</subject><subject>Epiphytes</subject><subject>Flowers & plants</subject><subject>Functional groups</subject><subject>Fungi</subject><subject>Fungi - physiology</subject><subject>Geoecology/Natural Processes</subject><subject>Life Sciences</subject><subject>Lignocellulose</subject><subject>Litter</subject><subject>marshes</subject><subject>Microbial Ecology</subject><subject>Microbiology</subject><subject>Mycobiome</subject><subject>mycoparasites</subject><subject>Nature Conservation</subject><subject>Pathogens</subject><subject>phytomass</subject><subject>Plant biomass</subject><subject>Plant communities</subject><subject>Plant Leaves - microbiology</subject><subject>Plant species</subject><subject>Plants</subject><subject>Saltmarshes</subject><subject>saprotrophs</subject><subject>Senescence</subject><subject>Soil</subject><subject>Soil analysis</subject><subject>Soil Microbiology</subject><subject>Soil surfaces</subject><subject>Soils</subject><subject>Spartina</subject><subject>Species</subject><subject>Survival</subject><subject>thatch</subject><subject>Water Quality/Water Pollution</subject><issn>0095-3628</issn><issn>1432-184X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFkc2KFDEURoMoTjv6Ai4k4MZN6c1fJbWU1nYGBhRmBHchpm7aDFVJm3Qt5u1N2aOCC12ELL5zv1xyCHnO4DUD0G8qAJemAy7WA32nH5ANk4J3zMgvD8kGYFCd6Lk5I09qvQVguufiMTkTWg8cBtgQe714j7XGnGgOdLekvZvoNs_zkuIxYqUujfTmG8ayhv7YwAZ8KjnEqaUxUUffoXd3Me3pLi9pdCtDrw_o2_hT8ii4qeKz-_ucfN69v9ledFcfP1xu3151XoI5dmYAJr0wXknQ3oxO92CYQm-8GPnopAweg1IqDMhG0aMJI2A_uCC5CGwQ5-TVqfdQ8vcF69HOsXqcJpcwL9UKpoRSjGn9X5QbzQ203rX15V_obV5K-4CVMqbXWgrRKH6ifMm1Fgz2UOLsyp1lYFdT9mTKNkv2pym7bvHivnr5OuP4e-SXmgaIE1BblPZY_rz9j9ofwh6dfw</recordid><startdate>20231101</startdate><enddate>20231101</enddate><creator>Rippel, Tyler M.</creator><creator>Wimp, Gina M.</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7SN</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>BKSAR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>H95</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>L.G</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PCBAR</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope><orcidid>https://orcid.org/0000-0002-4412-246X</orcidid></search><sort><creationdate>20231101</creationdate><title>Succession of Fungal Communities and Their Functional Profiles in a Decaying Foundation Species</title><author>Rippel, Tyler M. ; Wimp, Gina M.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c408t-89014c38c5407c8da760815ec8c3d2da44fcef555f9e1d36e8fd0e69af423f193</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Abundance</topic><topic>Accretion</topic><topic>Aquatic plants</topic><topic>Biomass</topic><topic>Biomedical and Life Sciences</topic><topic>chemistry</topic><topic>Decomposition</topic><topic>Deposition</topic><topic>Ecology</topic><topic>Ecosystem</topic><topic>ecosystems</topic><topic>Epiphytes</topic><topic>Flowers & plants</topic><topic>Functional groups</topic><topic>Fungi</topic><topic>Fungi - physiology</topic><topic>Geoecology/Natural Processes</topic><topic>Life Sciences</topic><topic>Lignocellulose</topic><topic>Litter</topic><topic>marshes</topic><topic>Microbial Ecology</topic><topic>Microbiology</topic><topic>Mycobiome</topic><topic>mycoparasites</topic><topic>Nature Conservation</topic><topic>Pathogens</topic><topic>phytomass</topic><topic>Plant biomass</topic><topic>Plant communities</topic><topic>Plant Leaves - microbiology</topic><topic>Plant species</topic><topic>Plants</topic><topic>Saltmarshes</topic><topic>saprotrophs</topic><topic>Senescence</topic><topic>Soil</topic><topic>Soil analysis</topic><topic>Soil Microbiology</topic><topic>Soil surfaces</topic><topic>Soils</topic><topic>Spartina</topic><topic>Species</topic><topic>Survival</topic><topic>thatch</topic><topic>Water Quality/Water Pollution</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Rippel, Tyler M.</creatorcontrib><creatorcontrib>Wimp, Gina M.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Ecology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Earth, Atmospheric & Aquatic Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Earth, Atmospheric & Aquatic Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><jtitle>Microbial ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Rippel, Tyler M.</au><au>Wimp, Gina M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Succession of Fungal Communities and Their Functional Profiles in a Decaying Foundation Species</atitle><jtitle>Microbial ecology</jtitle><stitle>Microb Ecol</stitle><addtitle>Microb Ecol</addtitle><date>2023-11-01</date><risdate>2023</risdate><volume>86</volume><issue>4</issue><spage>3003</spage><epage>3012</epage><pages>3003-3012</pages><issn>0095-3628</issn><eissn>1432-184X</eissn><abstract>Dead plant biomass from foundation plant species is fundamental for the survival of coastal salt marshes because dead biomass aids in the vertical accretion of the ecosystem. Fungi regulate the decomposition of dead biomass, and thus play an essential role for marsh survival. Despite their importance, little is known about the compositional and functional changes of fungal communities in plant matter throughout senescence and litter decomposition. Here, we analyzed how fungal communities and their functionality change in the foundation plant species
Spartina patens
, which builds vast amounts of dead plant biomass (thatch) on the soil surface. We analyzed the chemical and fungal properties of live biomass, standing dead biomass (dead biomass shortly after senescence), upper thatch (top layer of litter on the soil surface), and lower thatch (bottom layer of litter on the soil surface) during September and November of 2021. We found that the chemical and fungal properties of different
S. patens
biomass types followed a predictable litter decomposition pattern. Notably, live biomass, standing dead biomass, upper thatch, and lower thatch all hosted unique fungal communities and litter chemistry. Functional groups present in live biomass (pathogens, epiphytes, and mycoparasites) were lost during senescence and later replaced by diverse saprotrophs. The abundance of lignocellulose saprotrophs increased throughout decomposition, with the highest abundance occurring in lower thatch. These results suggest a predictable succession of fungal communities through the senescence and decomposition of the foundation species
S. patens
. Our study highlights the diversity of fungal communities in a disappearing foundation species.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>37792090</pmid><doi>10.1007/s00248-023-02306-7</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-4412-246X</orcidid></addata></record> |
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| subjects | Abundance Accretion Aquatic plants Biomass Biomedical and Life Sciences chemistry Decomposition Deposition Ecology Ecosystem ecosystems Epiphytes Flowers & plants Functional groups Fungi Fungi - physiology Geoecology/Natural Processes Life Sciences Lignocellulose Litter marshes Microbial Ecology Microbiology Mycobiome mycoparasites Nature Conservation Pathogens phytomass Plant biomass Plant communities Plant Leaves - microbiology Plant species Plants Saltmarshes saprotrophs Senescence Soil Soil analysis Soil Microbiology Soil surfaces Soils Spartina Species Survival thatch Water Quality/Water Pollution |
| title | Succession of Fungal Communities and Their Functional Profiles in a Decaying Foundation Species |
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