DeepHistoNet: A robust deep‐learning model for the classification of hepatocellular, lung, and colon carcinoma
In recent days, non‐communicable diseases (NCDs) require more attention since they require specialized infrastructure for treatment. As per the cancer population registry estimate, nearly 800,000 new cancer cases will be detected yearly. The statistics alarm the need for early cancer detection and d...
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description | In recent days, non‐communicable diseases (NCDs) require more attention since they require specialized infrastructure for treatment. As per the cancer population registry estimate, nearly 800,000 new cancer cases will be detected yearly. The statistics alarm the need for early cancer detection and diagnosis. Cancer identification can be made either through manual efforts or by computer‐aided algorithms. Manual efforts‐based cancer detection is labor intensive and also offers more time complexity. In contrast, computer‐aided algorithms offer feasibility in reducing time and manual efforts. With the motivation to develop a computer‐aided diagnosis system for NCD, we developed a cancer detection methodology. In the present article, a deep learning (DL)‐based cancer identification model is developed. In DL‐based architectures, the features are generally extracted using convolutional neural networks. The proposed attention‐guided, densely connected residual, and dilated convolution deep neural network called DeepHistoNet acquire precise patterns for classification. Experimentation has been carried out on Kasturba Medical College (KMC), TCGA‐LIHC, and LC25000 datasets to prove the robustness of the model. Performance evaluation metrics like F1‐score, sensitivity, specificity, recall, and accuracy validate the experimentation. Experimental results demonstrate that the proposed DeepHistoNet model outperforms the other state‐of‐the‐art methods. The proposed model has been able to classify the KMC liver dataset with 97.1% accuracy and 0.9867 value of area under the curve–receiver operating characteristic curve (AUC‐ROC), which is the best result obtained compared to the state‐of‐the‐art techniques. The performance of the DeepHistoNet has been even better on the LC25000 dataset. On the LC25000 dataset, the proposed model achieved 99.8% classification accuracy. To our knowledge, DeepHistoNet is a novel approach for multiple histopathological image classification.
Research Highlights
A novel robust DL model is proposed for histopathological image carcinoma classification.
The precise patterns for accurate classification are extracted using dense cross‐connected residual blocks.
Spatial attention is provided to the network so that the spatial information is not lost during the feature extraction.
DeepHistoNet is trained and evaluated on the liver, lung, and colon histopathology datasets to demonstrate its resilience. The results are promising and outperform state‐of‐the |
doi_str_mv | 10.1002/jemt.24426 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2869220323</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2869220323</sourcerecordid><originalsourceid>FETCH-LOGICAL-c3936-e41edd5cecf340270c131e2fdbf3cde377d69727e54ac68cfba32e0dc5b55f3</originalsourceid><addsrcrecordid>eNp90ctO3DAUBmCrKiowdNMHqCx1UyECvsQJ6Q7BcBPQRVmwsxz7GDxy4mAnQux4BJ6xT1IPQ1mwYGXr6NOvY_8IfaNklxLC9hbQjbusLFn1CW1Q0tRFnjafl3fRFA0lN-toM6UFIZQKWn5B67yuBSkrsYGGI4Dh1KUxXMH4Cx_gGNopjdjk8d-nZw8q9q6_xV0w4LENEY93gLVXKTnrtBpd6HGw-A4GNQYN3k9exR3sp_52B6veYB18JlpF7frQqS20ZpVP8PX1nKE_x_Prw9Pi4vfJ2eHBRaF5w6sCSgrGCA3a8pKwmmjKKTBrWsu1gfwAUzU1q0GUSlf72raKMyBGi1YIy2fo5yp1iOF-gjTKzqXldqqHMCXJ9quGMcIZz_THO7oIU-zzbpI1lBNRV1xktb1SOoaUIlg5RNep-CgpkcsW5LIF-dJCxt9fI6e2A_NG_397BnQFHpyHxw-i5Pn88noV-g_so5R-</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2913057635</pqid></control><display><type>article</type><title>DeepHistoNet: A robust deep‐learning model for the classification of hepatocellular, lung, and colon carcinoma</title><source>Wiley Online Library Journals Frontfile Complete</source><creator>Kadirappa, Ravindranath ; S., Deivalakshmi ; R., Pandeeswari ; Ko, Seok‐Bum</creator><creatorcontrib>Kadirappa, Ravindranath ; S., Deivalakshmi ; R., Pandeeswari ; Ko, Seok‐Bum</creatorcontrib><description>In recent days, non‐communicable diseases (NCDs) require more attention since they require specialized infrastructure for treatment. As per the cancer population registry estimate, nearly 800,000 new cancer cases will be detected yearly. The statistics alarm the need for early cancer detection and diagnosis. Cancer identification can be made either through manual efforts or by computer‐aided algorithms. Manual efforts‐based cancer detection is labor intensive and also offers more time complexity. In contrast, computer‐aided algorithms offer feasibility in reducing time and manual efforts. With the motivation to develop a computer‐aided diagnosis system for NCD, we developed a cancer detection methodology. In the present article, a deep learning (DL)‐based cancer identification model is developed. In DL‐based architectures, the features are generally extracted using convolutional neural networks. The proposed attention‐guided, densely connected residual, and dilated convolution deep neural network called DeepHistoNet acquire precise patterns for classification. Experimentation has been carried out on Kasturba Medical College (KMC), TCGA‐LIHC, and LC25000 datasets to prove the robustness of the model. Performance evaluation metrics like F1‐score, sensitivity, specificity, recall, and accuracy validate the experimentation. Experimental results demonstrate that the proposed DeepHistoNet model outperforms the other state‐of‐the‐art methods. The proposed model has been able to classify the KMC liver dataset with 97.1% accuracy and 0.9867 value of area under the curve–receiver operating characteristic curve (AUC‐ROC), which is the best result obtained compared to the state‐of‐the‐art techniques. The performance of the DeepHistoNet has been even better on the LC25000 dataset. On the LC25000 dataset, the proposed model achieved 99.8% classification accuracy. To our knowledge, DeepHistoNet is a novel approach for multiple histopathological image classification.
Research Highlights
A novel robust DL model is proposed for histopathological image carcinoma classification.
The precise patterns for accurate classification are extracted using dense cross‐connected residual blocks.
Spatial attention is provided to the network so that the spatial information is not lost during the feature extraction.
DeepHistoNet is trained and evaluated on the liver, lung, and colon histopathology datasets to demonstrate its resilience. The results are promising and outperform state‐of‐the‐art techniques.
The proposed methodology has obtained the AUC‐ROC value of 0.9867 with a classification accuracy of 97.1% on the KMC dataset.
The proposed DeepHistoNet has classified the LC25000 dataset with 99.8% accuracy. The results are the best obtained till date.
The proposed methodology extracts the patches from whole slide images (WSIs) and resizes the patches to (224 × 224 × 3), and then the proposed DeepHistoNet is used to classify the images as cancer grades. The WSI used in the research are from the liver, lung, and colon organs of the human body.</description><identifier>ISSN: 1059-910X</identifier><identifier>EISSN: 1097-0029</identifier><identifier>DOI: 10.1002/jemt.24426</identifier><identifier>PMID: 37750465</identifier><language>eng</language><publisher>Hoboken, USA: John Wiley & Sons, Inc</publisher><subject>Accuracy ; Algorithms ; Art techniques ; Artificial neural networks ; Cancer ; Classification ; Colon ; colon adenocarcinoma ; Colorectal cancer ; Datasets ; Deep learning ; Diagnosis ; Experimentation ; Feature extraction ; Hepatocellular carcinoma ; Histopathology ; Image classification ; Liver ; Liver cancer ; lung adenocarcinoma ; Lung cancer ; Lung carcinoma ; lung squamous cell carcinoma ; Lungs ; Machine learning ; Medical imaging ; Neural networks ; Performance evaluation ; Robustness ; Spatial data ; Squamous cell carcinoma</subject><ispartof>Microscopy research and technique, 2024-02, Vol.87 (2), p.229-256</ispartof><rights>2023 Wiley Periodicals LLC.</rights><rights>2024 Wiley Periodicals LLC.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3936-e41edd5cecf340270c131e2fdbf3cde377d69727e54ac68cfba32e0dc5b55f3</citedby><cites>FETCH-LOGICAL-c3936-e41edd5cecf340270c131e2fdbf3cde377d69727e54ac68cfba32e0dc5b55f3</cites><orcidid>0000-0003-2562-2781</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fjemt.24426$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fjemt.24426$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37750465$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kadirappa, Ravindranath</creatorcontrib><creatorcontrib>S., Deivalakshmi</creatorcontrib><creatorcontrib>R., Pandeeswari</creatorcontrib><creatorcontrib>Ko, Seok‐Bum</creatorcontrib><title>DeepHistoNet: A robust deep‐learning model for the classification of hepatocellular, lung, and colon carcinoma</title><title>Microscopy research and technique</title><addtitle>Microsc Res Tech</addtitle><description>In recent days, non‐communicable diseases (NCDs) require more attention since they require specialized infrastructure for treatment. As per the cancer population registry estimate, nearly 800,000 new cancer cases will be detected yearly. The statistics alarm the need for early cancer detection and diagnosis. Cancer identification can be made either through manual efforts or by computer‐aided algorithms. Manual efforts‐based cancer detection is labor intensive and also offers more time complexity. In contrast, computer‐aided algorithms offer feasibility in reducing time and manual efforts. With the motivation to develop a computer‐aided diagnosis system for NCD, we developed a cancer detection methodology. In the present article, a deep learning (DL)‐based cancer identification model is developed. In DL‐based architectures, the features are generally extracted using convolutional neural networks. The proposed attention‐guided, densely connected residual, and dilated convolution deep neural network called DeepHistoNet acquire precise patterns for classification. Experimentation has been carried out on Kasturba Medical College (KMC), TCGA‐LIHC, and LC25000 datasets to prove the robustness of the model. Performance evaluation metrics like F1‐score, sensitivity, specificity, recall, and accuracy validate the experimentation. Experimental results demonstrate that the proposed DeepHistoNet model outperforms the other state‐of‐the‐art methods. The proposed model has been able to classify the KMC liver dataset with 97.1% accuracy and 0.9867 value of area under the curve–receiver operating characteristic curve (AUC‐ROC), which is the best result obtained compared to the state‐of‐the‐art techniques. The performance of the DeepHistoNet has been even better on the LC25000 dataset. On the LC25000 dataset, the proposed model achieved 99.8% classification accuracy. To our knowledge, DeepHistoNet is a novel approach for multiple histopathological image classification.
Research Highlights
A novel robust DL model is proposed for histopathological image carcinoma classification.
The precise patterns for accurate classification are extracted using dense cross‐connected residual blocks.
Spatial attention is provided to the network so that the spatial information is not lost during the feature extraction.
DeepHistoNet is trained and evaluated on the liver, lung, and colon histopathology datasets to demonstrate its resilience. The results are promising and outperform state‐of‐the‐art techniques.
The proposed methodology has obtained the AUC‐ROC value of 0.9867 with a classification accuracy of 97.1% on the KMC dataset.
The proposed DeepHistoNet has classified the LC25000 dataset with 99.8% accuracy. The results are the best obtained till date.
The proposed methodology extracts the patches from whole slide images (WSIs) and resizes the patches to (224 × 224 × 3), and then the proposed DeepHistoNet is used to classify the images as cancer grades. The WSI used in the research are from the liver, lung, and colon organs of the human body.</description><subject>Accuracy</subject><subject>Algorithms</subject><subject>Art techniques</subject><subject>Artificial neural networks</subject><subject>Cancer</subject><subject>Classification</subject><subject>Colon</subject><subject>colon adenocarcinoma</subject><subject>Colorectal cancer</subject><subject>Datasets</subject><subject>Deep learning</subject><subject>Diagnosis</subject><subject>Experimentation</subject><subject>Feature extraction</subject><subject>Hepatocellular carcinoma</subject><subject>Histopathology</subject><subject>Image classification</subject><subject>Liver</subject><subject>Liver cancer</subject><subject>lung adenocarcinoma</subject><subject>Lung cancer</subject><subject>Lung carcinoma</subject><subject>lung squamous cell carcinoma</subject><subject>Lungs</subject><subject>Machine learning</subject><subject>Medical imaging</subject><subject>Neural networks</subject><subject>Performance evaluation</subject><subject>Robustness</subject><subject>Spatial data</subject><subject>Squamous cell carcinoma</subject><issn>1059-910X</issn><issn>1097-0029</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNp90ctO3DAUBmCrKiowdNMHqCx1UyECvsQJ6Q7BcBPQRVmwsxz7GDxy4mAnQux4BJ6xT1IPQ1mwYGXr6NOvY_8IfaNklxLC9hbQjbusLFn1CW1Q0tRFnjafl3fRFA0lN-toM6UFIZQKWn5B67yuBSkrsYGGI4Dh1KUxXMH4Cx_gGNopjdjk8d-nZw8q9q6_xV0w4LENEY93gLVXKTnrtBpd6HGw-A4GNQYN3k9exR3sp_52B6veYB18JlpF7frQqS20ZpVP8PX1nKE_x_Prw9Pi4vfJ2eHBRaF5w6sCSgrGCA3a8pKwmmjKKTBrWsu1gfwAUzU1q0GUSlf72raKMyBGi1YIy2fo5yp1iOF-gjTKzqXldqqHMCXJ9quGMcIZz_THO7oIU-zzbpI1lBNRV1xktb1SOoaUIlg5RNep-CgpkcsW5LIF-dJCxt9fI6e2A_NG_397BnQFHpyHxw-i5Pn88noV-g_so5R-</recordid><startdate>202402</startdate><enddate>202402</enddate><creator>Kadirappa, Ravindranath</creator><creator>S., Deivalakshmi</creator><creator>R., Pandeeswari</creator><creator>Ko, Seok‐Bum</creator><general>John Wiley & Sons, Inc</general><general>Wiley Subscription Services, Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QP</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7SS</scope><scope>7TA</scope><scope>7TB</scope><scope>7U5</scope><scope>7U7</scope><scope>8BQ</scope><scope>8FD</scope><scope>C1K</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>H8G</scope><scope>JG9</scope><scope>JQ2</scope><scope>K9.</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-2562-2781</orcidid></search><sort><creationdate>202402</creationdate><title>DeepHistoNet: A robust deep‐learning model for the classification of hepatocellular, lung, and colon carcinoma</title><author>Kadirappa, Ravindranath ; S., Deivalakshmi ; R., Pandeeswari ; Ko, Seok‐Bum</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3936-e41edd5cecf340270c131e2fdbf3cde377d69727e54ac68cfba32e0dc5b55f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Accuracy</topic><topic>Algorithms</topic><topic>Art techniques</topic><topic>Artificial neural networks</topic><topic>Cancer</topic><topic>Classification</topic><topic>Colon</topic><topic>colon adenocarcinoma</topic><topic>Colorectal cancer</topic><topic>Datasets</topic><topic>Deep learning</topic><topic>Diagnosis</topic><topic>Experimentation</topic><topic>Feature extraction</topic><topic>Hepatocellular carcinoma</topic><topic>Histopathology</topic><topic>Image classification</topic><topic>Liver</topic><topic>Liver cancer</topic><topic>lung adenocarcinoma</topic><topic>Lung cancer</topic><topic>Lung carcinoma</topic><topic>lung squamous cell carcinoma</topic><topic>Lungs</topic><topic>Machine learning</topic><topic>Medical imaging</topic><topic>Neural networks</topic><topic>Performance evaluation</topic><topic>Robustness</topic><topic>Spatial data</topic><topic>Squamous cell carcinoma</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kadirappa, Ravindranath</creatorcontrib><creatorcontrib>S., Deivalakshmi</creatorcontrib><creatorcontrib>R., Pandeeswari</creatorcontrib><creatorcontrib>Ko, Seok‐Bum</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Materials Business File</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Toxicology Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Copper Technical Reference Library</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Microscopy research and technique</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kadirappa, Ravindranath</au><au>S., Deivalakshmi</au><au>R., Pandeeswari</au><au>Ko, Seok‐Bum</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>DeepHistoNet: A robust deep‐learning model for the classification of hepatocellular, lung, and colon carcinoma</atitle><jtitle>Microscopy research and technique</jtitle><addtitle>Microsc Res Tech</addtitle><date>2024-02</date><risdate>2024</risdate><volume>87</volume><issue>2</issue><spage>229</spage><epage>256</epage><pages>229-256</pages><issn>1059-910X</issn><eissn>1097-0029</eissn><abstract>In recent days, non‐communicable diseases (NCDs) require more attention since they require specialized infrastructure for treatment. As per the cancer population registry estimate, nearly 800,000 new cancer cases will be detected yearly. The statistics alarm the need for early cancer detection and diagnosis. Cancer identification can be made either through manual efforts or by computer‐aided algorithms. Manual efforts‐based cancer detection is labor intensive and also offers more time complexity. In contrast, computer‐aided algorithms offer feasibility in reducing time and manual efforts. With the motivation to develop a computer‐aided diagnosis system for NCD, we developed a cancer detection methodology. In the present article, a deep learning (DL)‐based cancer identification model is developed. In DL‐based architectures, the features are generally extracted using convolutional neural networks. The proposed attention‐guided, densely connected residual, and dilated convolution deep neural network called DeepHistoNet acquire precise patterns for classification. Experimentation has been carried out on Kasturba Medical College (KMC), TCGA‐LIHC, and LC25000 datasets to prove the robustness of the model. Performance evaluation metrics like F1‐score, sensitivity, specificity, recall, and accuracy validate the experimentation. Experimental results demonstrate that the proposed DeepHistoNet model outperforms the other state‐of‐the‐art methods. The proposed model has been able to classify the KMC liver dataset with 97.1% accuracy and 0.9867 value of area under the curve–receiver operating characteristic curve (AUC‐ROC), which is the best result obtained compared to the state‐of‐the‐art techniques. The performance of the DeepHistoNet has been even better on the LC25000 dataset. On the LC25000 dataset, the proposed model achieved 99.8% classification accuracy. To our knowledge, DeepHistoNet is a novel approach for multiple histopathological image classification.
Research Highlights
A novel robust DL model is proposed for histopathological image carcinoma classification.
The precise patterns for accurate classification are extracted using dense cross‐connected residual blocks.
Spatial attention is provided to the network so that the spatial information is not lost during the feature extraction.
DeepHistoNet is trained and evaluated on the liver, lung, and colon histopathology datasets to demonstrate its resilience. The results are promising and outperform state‐of‐the‐art techniques.
The proposed methodology has obtained the AUC‐ROC value of 0.9867 with a classification accuracy of 97.1% on the KMC dataset.
The proposed DeepHistoNet has classified the LC25000 dataset with 99.8% accuracy. The results are the best obtained till date.
The proposed methodology extracts the patches from whole slide images (WSIs) and resizes the patches to (224 × 224 × 3), and then the proposed DeepHistoNet is used to classify the images as cancer grades. The WSI used in the research are from the liver, lung, and colon organs of the human body.</abstract><cop>Hoboken, USA</cop><pub>John Wiley & Sons, Inc</pub><pmid>37750465</pmid><doi>10.1002/jemt.24426</doi><tpages>28</tpages><orcidid>https://orcid.org/0000-0003-2562-2781</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Accuracy Algorithms Art techniques Artificial neural networks Cancer Classification Colon colon adenocarcinoma Colorectal cancer Datasets Deep learning Diagnosis Experimentation Feature extraction Hepatocellular carcinoma Histopathology Image classification Liver Liver cancer lung adenocarcinoma Lung cancer Lung carcinoma lung squamous cell carcinoma Lungs Machine learning Medical imaging Neural networks Performance evaluation Robustness Spatial data Squamous cell carcinoma |
title | DeepHistoNet: A robust deep‐learning model for the classification of hepatocellular, lung, and colon carcinoma |
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