Evidence of differentiation and population structure in Charolais cattle of Mexico
Charolais is one of the most important beef cattle breeds in the world. In Mexico, it was introduced almost a century ago, and it has been suggested that particular breeding management and genetic material origin have caused a process of divergence among the current population. By a high-density SNP...
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| Veröffentlicht in: | Tropical animal health and production 2023-10, Vol.55 (5), p.297-297, Article 297 |
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| creator | Parra-Bracamonte, Gaspar Manuel Magaña-Monforte, Juan G. Jahuey-Martínez, Francisco J. Herrera-Ojeda, Jessica B. Vázquez-Armijo, José F. Segura-Correa, José C. |
| description | Charolais is one of the most important beef cattle breeds in the world. In Mexico, it was introduced almost a century ago, and it has been suggested that particular breeding management and genetic material origin have caused a process of divergence among the current population. By a high-density SNP array genome-wide analysis, this study aimed to assess the proposed differentiation and population structure of local populations by genetic distances and structure approaches, and a European Charolais sample was included as a reference population. The differentiation statistics indicated that local populations exhibit moderate divergence, confirming a significant differentiation process between northeastern and northwestern Charolais populations (Fst≥ 0.043, D≥ 0.031). These results were strongly supported by PCA and structure analysis. Genetic isolation and low genetic flow between populations and divergent origins of introduced genetic material (i.e., semen) are likely the main drivers of the outcomes. Some implications are discussed. |
| doi_str_mv | 10.1007/s11250-023-03729-7 |
| format | Article |
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In Mexico, it was introduced almost a century ago, and it has been suggested that particular breeding management and genetic material origin have caused a process of divergence among the current population. By a high-density SNP array genome-wide analysis, this study aimed to assess the proposed differentiation and population structure of local populations by genetic distances and structure approaches, and a European Charolais sample was included as a reference population. The differentiation statistics indicated that local populations exhibit moderate divergence, confirming a significant differentiation process between northeastern and northwestern Charolais populations (Fst≥ 0.043, D≥ 0.031). These results were strongly supported by PCA and structure analysis. Genetic isolation and low genetic flow between populations and divergent origins of introduced genetic material (i.e., semen) are likely the main drivers of the outcomes. Some implications are discussed.</description><identifier>ISSN: 0049-4747</identifier><identifier>EISSN: 1573-7438</identifier><identifier>DOI: 10.1007/s11250-023-03729-7</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Animals ; Beef cattle ; Biomedical and Life Sciences ; Cattle ; Datasets ; Differentiation ; Genetic analysis ; Genetic distance ; Genetic diversity ; Genetic isolation ; Genomes ; Life Sciences ; Local population ; Population (statistical) ; Population density ; Population genetics ; Population structure ; Principal components analysis ; Quality control ; Semen ; Short Communications ; Single-nucleotide polymorphism ; Statistical analysis ; Statistics ; Structural analysis ; Veterinary Medicine/Veterinary Science ; Zoology</subject><ispartof>Tropical animal health and production, 2023-10, Vol.55 (5), p.297-297, Article 297</ispartof><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2023</rights><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2023.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c303t-ea22829c15346c0ea919137dc25b4031444853994f11e79f14f588c9c16b06583</cites><orcidid>0000-0002-0128-6747 ; 0000-0003-4888-969X ; 0000-0002-6562-5875 ; 0000-0002-9327-2042 ; 0000-0001-5293-1550 ; 0000-0003-1329-9948</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11250-023-03729-7$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11250-023-03729-7$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27923,27924,41487,42556,51318</link.rule.ids></links><search><creatorcontrib>Parra-Bracamonte, Gaspar Manuel</creatorcontrib><creatorcontrib>Magaña-Monforte, Juan G.</creatorcontrib><creatorcontrib>Jahuey-Martínez, Francisco J.</creatorcontrib><creatorcontrib>Herrera-Ojeda, Jessica B.</creatorcontrib><creatorcontrib>Vázquez-Armijo, José F.</creatorcontrib><creatorcontrib>Segura-Correa, José C.</creatorcontrib><title>Evidence of differentiation and population structure in Charolais cattle of Mexico</title><title>Tropical animal health and production</title><addtitle>Trop Anim Health Prod</addtitle><description>Charolais is one of the most important beef cattle breeds in the world. 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Some implications are discussed.</description><subject>Animals</subject><subject>Beef cattle</subject><subject>Biomedical and Life Sciences</subject><subject>Cattle</subject><subject>Datasets</subject><subject>Differentiation</subject><subject>Genetic analysis</subject><subject>Genetic distance</subject><subject>Genetic diversity</subject><subject>Genetic isolation</subject><subject>Genomes</subject><subject>Life Sciences</subject><subject>Local population</subject><subject>Population (statistical)</subject><subject>Population density</subject><subject>Population genetics</subject><subject>Population structure</subject><subject>Principal components analysis</subject><subject>Quality control</subject><subject>Semen</subject><subject>Short Communications</subject><subject>Single-nucleotide polymorphism</subject><subject>Statistical analysis</subject><subject>Statistics</subject><subject>Structural analysis</subject><subject>Veterinary Medicine/Veterinary 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| ispartof | Tropical animal health and production, 2023-10, Vol.55 (5), p.297-297, Article 297 |
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| source | SpringerLink Journals - AutoHoldings |
| subjects | Animals Beef cattle Biomedical and Life Sciences Cattle Datasets Differentiation Genetic analysis Genetic distance Genetic diversity Genetic isolation Genomes Life Sciences Local population Population (statistical) Population density Population genetics Population structure Principal components analysis Quality control Semen Short Communications Single-nucleotide polymorphism Statistical analysis Statistics Structural analysis Veterinary Medicine/Veterinary Science Zoology |
| title | Evidence of differentiation and population structure in Charolais cattle of Mexico |
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