Single-molecule analysis of osmolyte-mediated nanomechanical unfolding behavior of a protein domain
The small organic molecules, known as osmolytes being ubiquitously present in different cell types, affect protein folding, stability and aggregation. However, it is unknown how the osmolytes affect the nanomechanical unfolding behavior of protein domain. Here, we show the osmolyte-dependent mechani...
Gespeichert in:
Veröffentlicht in: | International journal of biological macromolecules 2023-12, Vol.253, p.126849-126849, Article 126849 |
---|---|
Hauptverfasser: | , , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 126849 |
---|---|
container_issue | |
container_start_page | 126849 |
container_title | International journal of biological macromolecules |
container_volume | 253 |
creator | Bajaj, Manish Muddassir, Mohd Choi, Bumjoon Singh, Priyanka Park, Jong Bum Singh, Surjeet Yadav, Manisha Kumar, Rajesh Eom, Kilho Sharma, Deepak |
description | The small organic molecules, known as osmolytes being ubiquitously present in different cell types, affect protein folding, stability and aggregation. However, it is unknown how the osmolytes affect the nanomechanical unfolding behavior of protein domain. Here, we show the osmolyte-dependent mechanical unfolding properties of protein titin immunoglobulin-27 (I27) domain using an atomic force microscopy (AFM)-based single-molecule force spectroscopy. We found that amines and methylamines improved the mechanical stability of I27 domain, whereas polyols had no effect. Interestingly, glycine betaine (GB) or trimethylamine-N-oxide (TMAO) increased the average unfolding force of the protein domain. The kinetic parameters analyzed at single-molecule level reveal that stabilizing effect of osmolytes is due to a decrease in the unfolding rate constant of I27, which was confirmed by molecular dynamics simulations. Our study reveals different effects that diverse osmolytes have on the mechanical properties of the protein, and suggests the potential use of osmolytes in modulating the mechanical stability of proteins required for various nano-biotechnological applications. |
doi_str_mv | 10.1016/j.ijbiomac.2023.126849 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2866113473</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2866113473</sourcerecordid><originalsourceid>FETCH-LOGICAL-c235t-765fb3b0c92cf807c6e516e33e155535abf5d4aec25c1ab8c4ac5b2d72d332243</originalsourceid><addsrcrecordid>eNo1kM1LxDAQxYMouK7-C5Kjl9Z8NGn3KItfsOBBPYdpOnVT0mRtWmH_e7tUTwNv3rx5_Ai55SznjOv7Lndd7WIPNhdMyJwLXRWbM7LiVbnJGGPynKwYL3hWcckuyVVK3axqxasVse8ufHnM-ujRTh4pBPDH5BKNLY1plo_jvMXGwYgNDRBij3YPwVnwdApt9M2cQGvcw4-Lw-kM6GGII7pAm7mVC9fkogWf8OZvrsnn0-PH9iXbvT2_bh92mRVSjVmpVVvLmtmNsG3FSqtRcY1SIldKSQV1q5oC0AplOdSVLcCqWjSlaKQUopBrcrfkzu-_J0yj6V2y6D0EjFMyotKac1mUcrbqxWqHmNKArTkMrofhaDgzJ6qmM_9UzYmqWajKX_DEcAA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2866113473</pqid></control><display><type>article</type><title>Single-molecule analysis of osmolyte-mediated nanomechanical unfolding behavior of a protein domain</title><source>Access via ScienceDirect (Elsevier)</source><creator>Bajaj, Manish ; Muddassir, Mohd ; Choi, Bumjoon ; Singh, Priyanka ; Park, Jong Bum ; Singh, Surjeet ; Yadav, Manisha ; Kumar, Rajesh ; Eom, Kilho ; Sharma, Deepak</creator><creatorcontrib>Bajaj, Manish ; Muddassir, Mohd ; Choi, Bumjoon ; Singh, Priyanka ; Park, Jong Bum ; Singh, Surjeet ; Yadav, Manisha ; Kumar, Rajesh ; Eom, Kilho ; Sharma, Deepak</creatorcontrib><description>The small organic molecules, known as osmolytes being ubiquitously present in different cell types, affect protein folding, stability and aggregation. However, it is unknown how the osmolytes affect the nanomechanical unfolding behavior of protein domain. Here, we show the osmolyte-dependent mechanical unfolding properties of protein titin immunoglobulin-27 (I27) domain using an atomic force microscopy (AFM)-based single-molecule force spectroscopy. We found that amines and methylamines improved the mechanical stability of I27 domain, whereas polyols had no effect. Interestingly, glycine betaine (GB) or trimethylamine-N-oxide (TMAO) increased the average unfolding force of the protein domain. The kinetic parameters analyzed at single-molecule level reveal that stabilizing effect of osmolytes is due to a decrease in the unfolding rate constant of I27, which was confirmed by molecular dynamics simulations. Our study reveals different effects that diverse osmolytes have on the mechanical properties of the protein, and suggests the potential use of osmolytes in modulating the mechanical stability of proteins required for various nano-biotechnological applications.</description><identifier>ISSN: 0141-8130</identifier><identifier>EISSN: 1879-0003</identifier><identifier>DOI: 10.1016/j.ijbiomac.2023.126849</identifier><language>eng</language><ispartof>International journal of biological macromolecules, 2023-12, Vol.253, p.126849-126849, Article 126849</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c235t-765fb3b0c92cf807c6e516e33e155535abf5d4aec25c1ab8c4ac5b2d72d332243</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Bajaj, Manish</creatorcontrib><creatorcontrib>Muddassir, Mohd</creatorcontrib><creatorcontrib>Choi, Bumjoon</creatorcontrib><creatorcontrib>Singh, Priyanka</creatorcontrib><creatorcontrib>Park, Jong Bum</creatorcontrib><creatorcontrib>Singh, Surjeet</creatorcontrib><creatorcontrib>Yadav, Manisha</creatorcontrib><creatorcontrib>Kumar, Rajesh</creatorcontrib><creatorcontrib>Eom, Kilho</creatorcontrib><creatorcontrib>Sharma, Deepak</creatorcontrib><title>Single-molecule analysis of osmolyte-mediated nanomechanical unfolding behavior of a protein domain</title><title>International journal of biological macromolecules</title><description>The small organic molecules, known as osmolytes being ubiquitously present in different cell types, affect protein folding, stability and aggregation. However, it is unknown how the osmolytes affect the nanomechanical unfolding behavior of protein domain. Here, we show the osmolyte-dependent mechanical unfolding properties of protein titin immunoglobulin-27 (I27) domain using an atomic force microscopy (AFM)-based single-molecule force spectroscopy. We found that amines and methylamines improved the mechanical stability of I27 domain, whereas polyols had no effect. Interestingly, glycine betaine (GB) or trimethylamine-N-oxide (TMAO) increased the average unfolding force of the protein domain. The kinetic parameters analyzed at single-molecule level reveal that stabilizing effect of osmolytes is due to a decrease in the unfolding rate constant of I27, which was confirmed by molecular dynamics simulations. Our study reveals different effects that diverse osmolytes have on the mechanical properties of the protein, and suggests the potential use of osmolytes in modulating the mechanical stability of proteins required for various nano-biotechnological applications.</description><issn>0141-8130</issn><issn>1879-0003</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNo1kM1LxDAQxYMouK7-C5Kjl9Z8NGn3KItfsOBBPYdpOnVT0mRtWmH_e7tUTwNv3rx5_Ai55SznjOv7Lndd7WIPNhdMyJwLXRWbM7LiVbnJGGPynKwYL3hWcckuyVVK3axqxasVse8ufHnM-ujRTh4pBPDH5BKNLY1plo_jvMXGwYgNDRBij3YPwVnwdApt9M2cQGvcw4-Lw-kM6GGII7pAm7mVC9fkogWf8OZvrsnn0-PH9iXbvT2_bh92mRVSjVmpVVvLmtmNsG3FSqtRcY1SIldKSQV1q5oC0AplOdSVLcCqWjSlaKQUopBrcrfkzu-_J0yj6V2y6D0EjFMyotKac1mUcrbqxWqHmNKArTkMrofhaDgzJ6qmM_9UzYmqWajKX_DEcAA</recordid><startdate>20231231</startdate><enddate>20231231</enddate><creator>Bajaj, Manish</creator><creator>Muddassir, Mohd</creator><creator>Choi, Bumjoon</creator><creator>Singh, Priyanka</creator><creator>Park, Jong Bum</creator><creator>Singh, Surjeet</creator><creator>Yadav, Manisha</creator><creator>Kumar, Rajesh</creator><creator>Eom, Kilho</creator><creator>Sharma, Deepak</creator><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20231231</creationdate><title>Single-molecule analysis of osmolyte-mediated nanomechanical unfolding behavior of a protein domain</title><author>Bajaj, Manish ; Muddassir, Mohd ; Choi, Bumjoon ; Singh, Priyanka ; Park, Jong Bum ; Singh, Surjeet ; Yadav, Manisha ; Kumar, Rajesh ; Eom, Kilho ; Sharma, Deepak</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c235t-765fb3b0c92cf807c6e516e33e155535abf5d4aec25c1ab8c4ac5b2d72d332243</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bajaj, Manish</creatorcontrib><creatorcontrib>Muddassir, Mohd</creatorcontrib><creatorcontrib>Choi, Bumjoon</creatorcontrib><creatorcontrib>Singh, Priyanka</creatorcontrib><creatorcontrib>Park, Jong Bum</creatorcontrib><creatorcontrib>Singh, Surjeet</creatorcontrib><creatorcontrib>Yadav, Manisha</creatorcontrib><creatorcontrib>Kumar, Rajesh</creatorcontrib><creatorcontrib>Eom, Kilho</creatorcontrib><creatorcontrib>Sharma, Deepak</creatorcontrib><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of biological macromolecules</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bajaj, Manish</au><au>Muddassir, Mohd</au><au>Choi, Bumjoon</au><au>Singh, Priyanka</au><au>Park, Jong Bum</au><au>Singh, Surjeet</au><au>Yadav, Manisha</au><au>Kumar, Rajesh</au><au>Eom, Kilho</au><au>Sharma, Deepak</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Single-molecule analysis of osmolyte-mediated nanomechanical unfolding behavior of a protein domain</atitle><jtitle>International journal of biological macromolecules</jtitle><date>2023-12-31</date><risdate>2023</risdate><volume>253</volume><spage>126849</spage><epage>126849</epage><pages>126849-126849</pages><artnum>126849</artnum><issn>0141-8130</issn><eissn>1879-0003</eissn><abstract>The small organic molecules, known as osmolytes being ubiquitously present in different cell types, affect protein folding, stability and aggregation. However, it is unknown how the osmolytes affect the nanomechanical unfolding behavior of protein domain. Here, we show the osmolyte-dependent mechanical unfolding properties of protein titin immunoglobulin-27 (I27) domain using an atomic force microscopy (AFM)-based single-molecule force spectroscopy. We found that amines and methylamines improved the mechanical stability of I27 domain, whereas polyols had no effect. Interestingly, glycine betaine (GB) or trimethylamine-N-oxide (TMAO) increased the average unfolding force of the protein domain. The kinetic parameters analyzed at single-molecule level reveal that stabilizing effect of osmolytes is due to a decrease in the unfolding rate constant of I27, which was confirmed by molecular dynamics simulations. Our study reveals different effects that diverse osmolytes have on the mechanical properties of the protein, and suggests the potential use of osmolytes in modulating the mechanical stability of proteins required for various nano-biotechnological applications.</abstract><doi>10.1016/j.ijbiomac.2023.126849</doi><tpages>1</tpages></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0141-8130 |
ispartof | International journal of biological macromolecules, 2023-12, Vol.253, p.126849-126849, Article 126849 |
issn | 0141-8130 1879-0003 |
language | eng |
recordid | cdi_proquest_miscellaneous_2866113473 |
source | Access via ScienceDirect (Elsevier) |
title | Single-molecule analysis of osmolyte-mediated nanomechanical unfolding behavior of a protein domain |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-27T14%3A28%3A19IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Single-molecule%20analysis%20of%20osmolyte-mediated%20nanomechanical%20unfolding%20behavior%20of%20a%20protein%20domain&rft.jtitle=International%20journal%20of%20biological%20macromolecules&rft.au=Bajaj,%20Manish&rft.date=2023-12-31&rft.volume=253&rft.spage=126849&rft.epage=126849&rft.pages=126849-126849&rft.artnum=126849&rft.issn=0141-8130&rft.eissn=1879-0003&rft_id=info:doi/10.1016/j.ijbiomac.2023.126849&rft_dat=%3Cproquest_cross%3E2866113473%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2866113473&rft_id=info:pmid/&rfr_iscdi=true |