The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)

Automated brain tumor segmentation methods have become well-established and reached performance levels offering clear clinical utility. These methods typically rely on four input magnetic resonance imaging (MRI) modalities: T1-weighted images with and without contrast enhancement, T2-weighted images...

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Hauptverfasser: Li, Hongwei Bran, Conte, Gian Marco, Anwar, Syed Muhammad, Kofler, Florian, Ezhov, Ivan, van Leemput, Koen, Piraud, Marie, Diaz, Maria, Cole, Byrone, Calabrese, Evan, Rudie, Jeff, Meissen, Felix, Adewole, Maruf, Janas, Anastasia, Kazerooni, Anahita Fathi, LaBella, Dominic, Moawad, Ahmed W, Farahani, Keyvan, Eddy, James, Bergquist, Timothy, Chung, Verena, Shinohara, Russell Takeshi, Dako, Farouk, Wiggins, Walter, Reitman, Zachary, Wang, Chunhao, Liu, Xinyang, Jiang, Zhifan, Familiar, Ariana, Johanson, Elaine, Meier, Zeke, Davatzikos, Christos, Freymann, John, Kirby, Justin, Bilello, Michel, Fathallah-Shaykh, Hassan M, Wiest, Roland Gerhard Rudi, Kirschke, Jan, Colen, Rivka R, Kotrotsou, Aikaterini, Lamontagne, Pamela, Marcus, Daniel, Milchenko, Mikhail, Nazeri, Arash, Weber, Marc-André, Mahajan, Abhishek, Mohan, Suyash, Mongan, John, Hess, Christopher, Cha, Soonmee, Villanueva-Meyer, Javier, Colak, Errol, Crivellaro, Priscila, Jakab, Andras, Albrecht, Jake, Anazodo, Udunna, Aboian, Mariam, Yu, Thomas, Baid, Ujjwal, Bakas, Spyridon, Linguraru, Marius George, Menze, Bjoern, Iglesias, Juan Eugenio, Wiestler, Benedikt
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container_title ArXiv.org
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creator Li, Hongwei Bran
Conte, Gian Marco
Anwar, Syed Muhammad
Kofler, Florian
Ezhov, Ivan
van Leemput, Koen
Piraud, Marie
Diaz, Maria
Cole, Byrone
Calabrese, Evan
Rudie, Jeff
Meissen, Felix
Adewole, Maruf
Janas, Anastasia
Kazerooni, Anahita Fathi
LaBella, Dominic
Moawad, Ahmed W
Farahani, Keyvan
Eddy, James
Bergquist, Timothy
Chung, Verena
Shinohara, Russell Takeshi
Dako, Farouk
Wiggins, Walter
Reitman, Zachary
Wang, Chunhao
Liu, Xinyang
Jiang, Zhifan
Familiar, Ariana
Johanson, Elaine
Meier, Zeke
Davatzikos, Christos
Freymann, John
Kirby, Justin
Bilello, Michel
Fathallah-Shaykh, Hassan M
Wiest, Roland Gerhard Rudi
Kirschke, Jan
Colen, Rivka R
Kotrotsou, Aikaterini
Lamontagne, Pamela
Marcus, Daniel
Milchenko, Mikhail
Nazeri, Arash
Weber, Marc-André
Mahajan, Abhishek
Mohan, Suyash
Mongan, John
Hess, Christopher
Cha, Soonmee
Villanueva-Meyer, Javier
Colak, Errol
Crivellaro, Priscila
Jakab, Andras
Albrecht, Jake
Anazodo, Udunna
Aboian, Mariam
Yu, Thomas
Baid, Ujjwal
Bakas, Spyridon
Linguraru, Marius George
Menze, Bjoern
Iglesias, Juan Eugenio
Wiestler, Benedikt
description Automated brain tumor segmentation methods have become well-established and reached performance levels offering clear clinical utility. These methods typically rely on four input magnetic resonance imaging (MRI) modalities: T1-weighted images with and without contrast enhancement, T2-weighted images, and FLAIR images. However, some sequences are often missing in clinical practice due to time constraints or image artifacts, such as patient motion. Consequently, the ability to substitute missing modalities and gain segmentation performance is highly desirable and necessary for the broader adoption of these algorithms in the clinical routine. In this work, we present the establishment of the Brain MR Image Synthesis Benchmark (BraSyn) in conjunction with the Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2023. The primary objective of this challenge is to evaluate image synthesis methods that can realistically generate missing MRI modalities when multiple available images are provided. The ultimate aim is to facilitate automated brain tumor segmentation pipelines. The image dataset used in the benchmark is diverse and multi-modal, created through collaboration with various hospitals and research institutions.
doi_str_mv 10.48350/196332
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Bjoern</creatorcontrib><creatorcontrib>Iglesias, Juan Eugenio</creatorcontrib><creatorcontrib>Wiestler, Benedikt</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><jtitle>ArXiv.org</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Hongwei Bran</au><au>Conte, Gian Marco</au><au>Anwar, Syed Muhammad</au><au>Kofler, Florian</au><au>Ezhov, Ivan</au><au>van Leemput, Koen</au><au>Piraud, Marie</au><au>Diaz, Maria</au><au>Cole, Byrone</au><au>Calabrese, Evan</au><au>Rudie, Jeff</au><au>Meissen, Felix</au><au>Adewole, Maruf</au><au>Janas, Anastasia</au><au>Kazerooni, Anahita Fathi</au><au>LaBella, Dominic</au><au>Moawad, Ahmed W</au><au>Farahani, Keyvan</au><au>Eddy, James</au><au>Bergquist, Timothy</au><au>Chung, Verena</au><au>Shinohara, Russell Takeshi</au><au>Dako, Farouk</au><au>Wiggins, Walter</au><au>Reitman, Zachary</au><au>Wang, Chunhao</au><au>Liu, Xinyang</au><au>Jiang, Zhifan</au><au>Familiar, Ariana</au><au>Johanson, Elaine</au><au>Meier, Zeke</au><au>Davatzikos, Christos</au><au>Freymann, John</au><au>Kirby, Justin</au><au>Bilello, Michel</au><au>Fathallah-Shaykh, Hassan M</au><au>Wiest, Roland Gerhard Rudi</au><au>Kirschke, Jan</au><au>Colen, Rivka R</au><au>Kotrotsou, Aikaterini</au><au>Lamontagne, Pamela</au><au>Marcus, Daniel</au><au>Milchenko, Mikhail</au><au>Nazeri, Arash</au><au>Weber, Marc-André</au><au>Mahajan, Abhishek</au><au>Mohan, Suyash</au><au>Mongan, John</au><au>Hess, Christopher</au><au>Cha, Soonmee</au><au>Villanueva-Meyer, Javier</au><au>Colak, Errol</au><au>Crivellaro, Priscila</au><au>Jakab, Andras</au><au>Albrecht, Jake</au><au>Anazodo, Udunna</au><au>Aboian, Mariam</au><au>Yu, Thomas</au><au>Baid, Ujjwal</au><au>Bakas, Spyridon</au><au>Linguraru, Marius George</au><au>Menze, Bjoern</au><au>Iglesias, Juan Eugenio</au><au>Wiestler, Benedikt</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)</atitle><jtitle>ArXiv.org</jtitle><addtitle>ArXiv</addtitle><date>2024-11-24</date><risdate>2024</risdate><issn>2331-8422</issn><eissn>2331-8422</eissn><abstract>Automated brain tumor segmentation methods have become well-established and reached performance levels offering clear clinical utility. These methods typically rely on four input magnetic resonance imaging (MRI) modalities: T1-weighted images with and without contrast enhancement, T2-weighted images, and FLAIR images. However, some sequences are often missing in clinical practice due to time constraints or image artifacts, such as patient motion. Consequently, the ability to substitute missing modalities and gain segmentation performance is highly desirable and necessary for the broader adoption of these algorithms in the clinical routine. In this work, we present the establishment of the Brain MR Image Synthesis Benchmark (BraSyn) in conjunction with the Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2023. The primary objective of this challenge is to evaluate image synthesis methods that can realistically generate missing MRI modalities when multiple available images are provided. The ultimate aim is to facilitate automated brain tumor segmentation pipelines. The image dataset used in the benchmark is diverse and multi-modal, created through collaboration with various hospitals and research institutions.</abstract><cop>United States</cop><pub>Cornell University</pub><pmid>37608932</pmid><doi>10.48350/196332</doi><oa>free_for_read</oa></addata></record>
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title The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)
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