A novel prognostic signature based on immunogenic cell death score predicts outcomes and response to transcatheter arterial chemoembolization and immunotherapy in hepatocellular carcinoma
Purpose The phenomenon of immunogenic cell death (ICD) is intricately linked to numerous antitumor treatments and exerts a profound regulatory function in the tumor immune microenvironment (TIME). We aimed to establish a prognostic signature from the ICD-related biomarkers to differentiate the TIME...
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container_title | Journal of cancer research and clinical oncology |
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creator | Zhang, Yunjie Yang, Junhui Xie, Shicheng Chen, Hanbin Zhong, Jinwei Lin, Xiaoben Yu, Zhijie Xia, Jinglin |
description | Purpose
The phenomenon of immunogenic cell death (ICD) is intricately linked to numerous antitumor treatments and exerts a profound regulatory function in the tumor immune microenvironment (TIME). We aimed to establish a prognostic signature from the ICD-related biomarkers to differentiate the TIME in hepatocellular carcinoma and predict diverse outcomes for patients with liver cancer.
Methods
ICD score-related genes (ICDSGs) were identified using the weighted gene co-expression network analysis (WGCNA). The ICD score-related signature (ICDSsig) was established by applying LASSO and Cox regression. Model precision was verified using the external datasets. We used independent prognostic variables in clinicopathologic factors to develop a nomogram. Further, clinical characteristics, immune and molecular landscapes, the responses of transcatheter arterial chemoembolization (TACE) and immunotherapy, and chemotherapy sensitivity were analyzed for high- and low-risk patients.
Results
ICD score—calculated using the single-sample gene set enrichment analysis (ssGSEA)—displayed strong associations with the TIME in HCC. We identified 34 ICDSGs after integrating the TCGA and GSE104580 datasets. Then, three novel ICDSGs (DNASE1L3, KLRB1, and LILRB1) were screened out to construct the ICDSsig; the prognostic signature performed well in the external databases. The high-risk patients had worse outcomes owing to their advanced pathological state, non-response of TACE, and immune-cold phenotype in the immune landscapes. The immune checkpoint genes, N6-methyladenosine-relevant genes, and microsatellite instability score were increased in the high-risk subgroup, thereby indicating a favorable sensitivity to immunotherapy. Common chemotherapy drugs were more effective in high-risk patients due to low half-maximal inhibitory concentration values.
Conclusion
The ICDSsig can potentially predict outcomes and therapeutic responses for patients with liver cancer and may assist clinicians in designing individualized treatment strategies. |
doi_str_mv | 10.1007/s00432-023-05017-1 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2831298039</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2858501465</sourcerecordid><originalsourceid>FETCH-LOGICAL-c326t-89020142afd080afc6c883eea4ceea0e0d0d632e62e0aad5a30c688725608fee3</originalsourceid><addsrcrecordid>eNp9kU2O1DAQhS0EYpqBC7BAltiwCZTtTuJejkb8SSOxgXVU7VS6PUrsYDtIw9W4HBUygMSCjS1Xfa9eyU-I5wpeK4D2TQbYG12BNhXUoNpKPRA7tZaUMfVDseOaqmqtmgvxJOdb4Hfd6sfiwrTG6qbd78SPKxniNxrlnOIpxFy8k9mfApYlkTxipl7GIP00LSGeKHDb0TjKnrCcZXaRqTlR713JMi7FxYmyxNDLRHmOIZMsUZaEITtWUKEkMfHpcZTuTFOk6RhH_x2LZ59VuHkxm3C-kz7IM81Y4mq7jJikw-R8iBM-FY8GHDM9u78vxZd3bz9ff6huPr3_eH11Uzmjm1LZA2hQe41DDxZwcI2z1hDh3vEBBD30jdHUaALEvkYDrrG21XUDdiAyl-LVNpf_6OtCuXSTz-s6GCguudPWKH2wYA6MvvwHvY1LCrwdU7XllPZNzZTeKJdizomGbk5-wnTXKejWaLst2o6j7X5F2ykWvbgfvRwn6v9IfmfJgNmAzK1wovTX-z9jfwJVobSu</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2858501465</pqid></control><display><type>article</type><title>A novel prognostic signature based on immunogenic cell death score predicts outcomes and response to transcatheter arterial chemoembolization and immunotherapy in hepatocellular carcinoma</title><source>SpringerLink Journals</source><creator>Zhang, Yunjie ; Yang, Junhui ; Xie, Shicheng ; Chen, Hanbin ; Zhong, Jinwei ; Lin, Xiaoben ; Yu, Zhijie ; Xia, Jinglin</creator><creatorcontrib>Zhang, Yunjie ; Yang, Junhui ; Xie, Shicheng ; Chen, Hanbin ; Zhong, Jinwei ; Lin, Xiaoben ; Yu, Zhijie ; Xia, Jinglin</creatorcontrib><description>Purpose
The phenomenon of immunogenic cell death (ICD) is intricately linked to numerous antitumor treatments and exerts a profound regulatory function in the tumor immune microenvironment (TIME). We aimed to establish a prognostic signature from the ICD-related biomarkers to differentiate the TIME in hepatocellular carcinoma and predict diverse outcomes for patients with liver cancer.
Methods
ICD score-related genes (ICDSGs) were identified using the weighted gene co-expression network analysis (WGCNA). The ICD score-related signature (ICDSsig) was established by applying LASSO and Cox regression. Model precision was verified using the external datasets. We used independent prognostic variables in clinicopathologic factors to develop a nomogram. Further, clinical characteristics, immune and molecular landscapes, the responses of transcatheter arterial chemoembolization (TACE) and immunotherapy, and chemotherapy sensitivity were analyzed for high- and low-risk patients.
Results
ICD score—calculated using the single-sample gene set enrichment analysis (ssGSEA)—displayed strong associations with the TIME in HCC. We identified 34 ICDSGs after integrating the TCGA and GSE104580 datasets. Then, three novel ICDSGs (DNASE1L3, KLRB1, and LILRB1) were screened out to construct the ICDSsig; the prognostic signature performed well in the external databases. The high-risk patients had worse outcomes owing to their advanced pathological state, non-response of TACE, and immune-cold phenotype in the immune landscapes. The immune checkpoint genes, N6-methyladenosine-relevant genes, and microsatellite instability score were increased in the high-risk subgroup, thereby indicating a favorable sensitivity to immunotherapy. Common chemotherapy drugs were more effective in high-risk patients due to low half-maximal inhibitory concentration values.
Conclusion
The ICDSsig can potentially predict outcomes and therapeutic responses for patients with liver cancer and may assist clinicians in designing individualized treatment strategies.</description><identifier>ISSN: 0171-5216</identifier><identifier>EISSN: 1432-1335</identifier><identifier>DOI: 10.1007/s00432-023-05017-1</identifier><identifier>PMID: 37382674</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Apoptosis ; Cancer Research ; Cell death ; Chemoembolization ; Chemotherapy ; Gene set enrichment analysis ; Genes ; Hematology ; Hepatocellular carcinoma ; Immune checkpoint ; Immunogenicity ; Immunosuppressive agents ; Immunotherapy ; Internal Medicine ; Liver cancer ; Medicine ; Medicine & Public Health ; Microenvironments ; Microsatellite instability ; N6-methyladenosine ; Nomograms ; Oncology ; Patients ; Phenotypes ; Risk groups</subject><ispartof>Journal of cancer research and clinical oncology, 2023-10, Vol.149 (13), p.11411-11429</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c326t-89020142afd080afc6c883eea4ceea0e0d0d632e62e0aad5a30c688725608fee3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00432-023-05017-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00432-023-05017-1$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37382674$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Yunjie</creatorcontrib><creatorcontrib>Yang, Junhui</creatorcontrib><creatorcontrib>Xie, Shicheng</creatorcontrib><creatorcontrib>Chen, Hanbin</creatorcontrib><creatorcontrib>Zhong, Jinwei</creatorcontrib><creatorcontrib>Lin, Xiaoben</creatorcontrib><creatorcontrib>Yu, Zhijie</creatorcontrib><creatorcontrib>Xia, Jinglin</creatorcontrib><title>A novel prognostic signature based on immunogenic cell death score predicts outcomes and response to transcatheter arterial chemoembolization and immunotherapy in hepatocellular carcinoma</title><title>Journal of cancer research and clinical oncology</title><addtitle>J Cancer Res Clin Oncol</addtitle><addtitle>J Cancer Res Clin Oncol</addtitle><description>Purpose
The phenomenon of immunogenic cell death (ICD) is intricately linked to numerous antitumor treatments and exerts a profound regulatory function in the tumor immune microenvironment (TIME). We aimed to establish a prognostic signature from the ICD-related biomarkers to differentiate the TIME in hepatocellular carcinoma and predict diverse outcomes for patients with liver cancer.
Methods
ICD score-related genes (ICDSGs) were identified using the weighted gene co-expression network analysis (WGCNA). The ICD score-related signature (ICDSsig) was established by applying LASSO and Cox regression. Model precision was verified using the external datasets. We used independent prognostic variables in clinicopathologic factors to develop a nomogram. Further, clinical characteristics, immune and molecular landscapes, the responses of transcatheter arterial chemoembolization (TACE) and immunotherapy, and chemotherapy sensitivity were analyzed for high- and low-risk patients.
Results
ICD score—calculated using the single-sample gene set enrichment analysis (ssGSEA)—displayed strong associations with the TIME in HCC. We identified 34 ICDSGs after integrating the TCGA and GSE104580 datasets. Then, three novel ICDSGs (DNASE1L3, KLRB1, and LILRB1) were screened out to construct the ICDSsig; the prognostic signature performed well in the external databases. The high-risk patients had worse outcomes owing to their advanced pathological state, non-response of TACE, and immune-cold phenotype in the immune landscapes. The immune checkpoint genes, N6-methyladenosine-relevant genes, and microsatellite instability score were increased in the high-risk subgroup, thereby indicating a favorable sensitivity to immunotherapy. Common chemotherapy drugs were more effective in high-risk patients due to low half-maximal inhibitory concentration values.
Conclusion
The ICDSsig can potentially predict outcomes and therapeutic responses for patients with liver cancer and may assist clinicians in designing individualized treatment strategies.</description><subject>Apoptosis</subject><subject>Cancer Research</subject><subject>Cell death</subject><subject>Chemoembolization</subject><subject>Chemotherapy</subject><subject>Gene set enrichment analysis</subject><subject>Genes</subject><subject>Hematology</subject><subject>Hepatocellular carcinoma</subject><subject>Immune checkpoint</subject><subject>Immunogenicity</subject><subject>Immunosuppressive agents</subject><subject>Immunotherapy</subject><subject>Internal Medicine</subject><subject>Liver cancer</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Microenvironments</subject><subject>Microsatellite instability</subject><subject>N6-methyladenosine</subject><subject>Nomograms</subject><subject>Oncology</subject><subject>Patients</subject><subject>Phenotypes</subject><subject>Risk groups</subject><issn>0171-5216</issn><issn>1432-1335</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp9kU2O1DAQhS0EYpqBC7BAltiwCZTtTuJejkb8SSOxgXVU7VS6PUrsYDtIw9W4HBUygMSCjS1Xfa9eyU-I5wpeK4D2TQbYG12BNhXUoNpKPRA7tZaUMfVDseOaqmqtmgvxJOdb4Hfd6sfiwrTG6qbd78SPKxniNxrlnOIpxFy8k9mfApYlkTxipl7GIP00LSGeKHDb0TjKnrCcZXaRqTlR713JMi7FxYmyxNDLRHmOIZMsUZaEITtWUKEkMfHpcZTuTFOk6RhH_x2LZ59VuHkxm3C-kz7IM81Y4mq7jJikw-R8iBM-FY8GHDM9u78vxZd3bz9ff6huPr3_eH11Uzmjm1LZA2hQe41DDxZwcI2z1hDh3vEBBD30jdHUaALEvkYDrrG21XUDdiAyl-LVNpf_6OtCuXSTz-s6GCguudPWKH2wYA6MvvwHvY1LCrwdU7XllPZNzZTeKJdizomGbk5-wnTXKejWaLst2o6j7X5F2ykWvbgfvRwn6v9IfmfJgNmAzK1wovTX-z9jfwJVobSu</recordid><startdate>20231001</startdate><enddate>20231001</enddate><creator>Zhang, Yunjie</creator><creator>Yang, Junhui</creator><creator>Xie, Shicheng</creator><creator>Chen, Hanbin</creator><creator>Zhong, Jinwei</creator><creator>Lin, Xiaoben</creator><creator>Yu, Zhijie</creator><creator>Xia, Jinglin</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TO</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope></search><sort><creationdate>20231001</creationdate><title>A novel prognostic signature based on immunogenic cell death score predicts outcomes and response to transcatheter arterial chemoembolization and immunotherapy in hepatocellular carcinoma</title><author>Zhang, Yunjie ; Yang, Junhui ; Xie, Shicheng ; Chen, Hanbin ; Zhong, Jinwei ; Lin, Xiaoben ; Yu, Zhijie ; Xia, Jinglin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c326t-89020142afd080afc6c883eea4ceea0e0d0d632e62e0aad5a30c688725608fee3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Apoptosis</topic><topic>Cancer Research</topic><topic>Cell death</topic><topic>Chemoembolization</topic><topic>Chemotherapy</topic><topic>Gene set enrichment analysis</topic><topic>Genes</topic><topic>Hematology</topic><topic>Hepatocellular carcinoma</topic><topic>Immune checkpoint</topic><topic>Immunogenicity</topic><topic>Immunosuppressive agents</topic><topic>Immunotherapy</topic><topic>Internal Medicine</topic><topic>Liver cancer</topic><topic>Medicine</topic><topic>Medicine & Public Health</topic><topic>Microenvironments</topic><topic>Microsatellite instability</topic><topic>N6-methyladenosine</topic><topic>Nomograms</topic><topic>Oncology</topic><topic>Patients</topic><topic>Phenotypes</topic><topic>Risk groups</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Yunjie</creatorcontrib><creatorcontrib>Yang, Junhui</creatorcontrib><creatorcontrib>Xie, Shicheng</creatorcontrib><creatorcontrib>Chen, Hanbin</creatorcontrib><creatorcontrib>Zhong, Jinwei</creatorcontrib><creatorcontrib>Lin, Xiaoben</creatorcontrib><creatorcontrib>Yu, Zhijie</creatorcontrib><creatorcontrib>Xia, Jinglin</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of cancer research and clinical oncology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Yunjie</au><au>Yang, Junhui</au><au>Xie, Shicheng</au><au>Chen, Hanbin</au><au>Zhong, Jinwei</au><au>Lin, Xiaoben</au><au>Yu, Zhijie</au><au>Xia, Jinglin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A novel prognostic signature based on immunogenic cell death score predicts outcomes and response to transcatheter arterial chemoembolization and immunotherapy in hepatocellular carcinoma</atitle><jtitle>Journal of cancer research and clinical oncology</jtitle><stitle>J Cancer Res Clin Oncol</stitle><addtitle>J Cancer Res Clin Oncol</addtitle><date>2023-10-01</date><risdate>2023</risdate><volume>149</volume><issue>13</issue><spage>11411</spage><epage>11429</epage><pages>11411-11429</pages><issn>0171-5216</issn><eissn>1432-1335</eissn><abstract>Purpose
The phenomenon of immunogenic cell death (ICD) is intricately linked to numerous antitumor treatments and exerts a profound regulatory function in the tumor immune microenvironment (TIME). We aimed to establish a prognostic signature from the ICD-related biomarkers to differentiate the TIME in hepatocellular carcinoma and predict diverse outcomes for patients with liver cancer.
Methods
ICD score-related genes (ICDSGs) were identified using the weighted gene co-expression network analysis (WGCNA). The ICD score-related signature (ICDSsig) was established by applying LASSO and Cox regression. Model precision was verified using the external datasets. We used independent prognostic variables in clinicopathologic factors to develop a nomogram. Further, clinical characteristics, immune and molecular landscapes, the responses of transcatheter arterial chemoembolization (TACE) and immunotherapy, and chemotherapy sensitivity were analyzed for high- and low-risk patients.
Results
ICD score—calculated using the single-sample gene set enrichment analysis (ssGSEA)—displayed strong associations with the TIME in HCC. We identified 34 ICDSGs after integrating the TCGA and GSE104580 datasets. Then, three novel ICDSGs (DNASE1L3, KLRB1, and LILRB1) were screened out to construct the ICDSsig; the prognostic signature performed well in the external databases. The high-risk patients had worse outcomes owing to their advanced pathological state, non-response of TACE, and immune-cold phenotype in the immune landscapes. The immune checkpoint genes, N6-methyladenosine-relevant genes, and microsatellite instability score were increased in the high-risk subgroup, thereby indicating a favorable sensitivity to immunotherapy. Common chemotherapy drugs were more effective in high-risk patients due to low half-maximal inhibitory concentration values.
Conclusion
The ICDSsig can potentially predict outcomes and therapeutic responses for patients with liver cancer and may assist clinicians in designing individualized treatment strategies.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>37382674</pmid><doi>10.1007/s00432-023-05017-1</doi><tpages>19</tpages></addata></record> |
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subjects | Apoptosis Cancer Research Cell death Chemoembolization Chemotherapy Gene set enrichment analysis Genes Hematology Hepatocellular carcinoma Immune checkpoint Immunogenicity Immunosuppressive agents Immunotherapy Internal Medicine Liver cancer Medicine Medicine & Public Health Microenvironments Microsatellite instability N6-methyladenosine Nomograms Oncology Patients Phenotypes Risk groups |
title | A novel prognostic signature based on immunogenic cell death score predicts outcomes and response to transcatheter arterial chemoembolization and immunotherapy in hepatocellular carcinoma |
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