Targeted Next-Generation Sequencing Improves the Prognostication of Patients with Disseminated Appendiceal Mucinous Neoplasms (Pseudomyxoma Peritonei)

Background Appendiceal mucinous neoplasms (AMNs) with disseminated disease (pseudomyxoma peritonei) are heterogeneous tumors with variable clinicopathologic behavior. Despite the development of prognostic systems, objective biomarkers are needed to stratify patients. With the advent of next-generati...

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Veröffentlicht in:Annals of surgical oncology 2023-11, Vol.30 (12), p.7517-7526
Hauptverfasser: Wald, Abigail I., Pingpank, James F., Ongchin, Melanie, Hall, Lauren B., Jones, Heather, Altpeter, Shannon, Liebdzinski, Michelle, Hamed, Ahmed B., Derby, Joshua, Nikiforova, Marina N., Bell, Phoenix D., Paniccia, Alessandro, Zureikat, Amer H., Gorantla, Vikram C., Rhee, John C., Thomas, Roby, Bartlett, David L., Smith, Katelyn, Henn, Patrick, Theisen, Brian K., Shyu, Susan, Shalaby, Akram, Choudry, M. Haroon A., Singhi, Aatur D.
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container_issue 12
container_start_page 7517
container_title Annals of surgical oncology
container_volume 30
creator Wald, Abigail I.
Pingpank, James F.
Ongchin, Melanie
Hall, Lauren B.
Jones, Heather
Altpeter, Shannon
Liebdzinski, Michelle
Hamed, Ahmed B.
Derby, Joshua
Nikiforova, Marina N.
Bell, Phoenix D.
Paniccia, Alessandro
Zureikat, Amer H.
Gorantla, Vikram C.
Rhee, John C.
Thomas, Roby
Bartlett, David L.
Smith, Katelyn
Henn, Patrick
Theisen, Brian K.
Shyu, Susan
Shalaby, Akram
Choudry, M. Haroon A.
Singhi, Aatur D.
description Background Appendiceal mucinous neoplasms (AMNs) with disseminated disease (pseudomyxoma peritonei) are heterogeneous tumors with variable clinicopathologic behavior. Despite the development of prognostic systems, objective biomarkers are needed to stratify patients. With the advent of next-generation sequencing (NGS), it remains unclear if molecular testing can improve the evaluation of disseminated AMN patients. Methods Targeted NGS was performed for 183 patients and correlated with clinicopathologic features to include American Joint Committee on Cancer/World Health Organization (AJCC/WHO) histologic grade, peritoneal cancer index (PCI), completeness of cytoreduction (CC) score, and overall survival (OS). Results Genomic alterations were identified for 179 (98%) disseminated AMNs. Excluding mitogen-activated protein kinase genes and GNAS due to their ubiquitous nature, collective genomic alterations in TP53 , SMAD4 , CDKN2A , and the mTOR genes were associated with older mean age, higher AJCC/WHO histologic grade, lymphovascular invasion, perineural invasion, regional lymph node metastasis, and lower mean PCI ( p  
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Haroon A. ; Singhi, Aatur D.</creator><creatorcontrib>Wald, Abigail I. ; Pingpank, James F. ; Ongchin, Melanie ; Hall, Lauren B. ; Jones, Heather ; Altpeter, Shannon ; Liebdzinski, Michelle ; Hamed, Ahmed B. ; Derby, Joshua ; Nikiforova, Marina N. ; Bell, Phoenix D. ; Paniccia, Alessandro ; Zureikat, Amer H. ; Gorantla, Vikram C. ; Rhee, John C. ; Thomas, Roby ; Bartlett, David L. ; Smith, Katelyn ; Henn, Patrick ; Theisen, Brian K. ; Shyu, Susan ; Shalaby, Akram ; Choudry, M. Haroon A. ; Singhi, Aatur D.</creatorcontrib><description>Background Appendiceal mucinous neoplasms (AMNs) with disseminated disease (pseudomyxoma peritonei) are heterogeneous tumors with variable clinicopathologic behavior. Despite the development of prognostic systems, objective biomarkers are needed to stratify patients. With the advent of next-generation sequencing (NGS), it remains unclear if molecular testing can improve the evaluation of disseminated AMN patients. Methods Targeted NGS was performed for 183 patients and correlated with clinicopathologic features to include American Joint Committee on Cancer/World Health Organization (AJCC/WHO) histologic grade, peritoneal cancer index (PCI), completeness of cytoreduction (CC) score, and overall survival (OS). Results Genomic alterations were identified for 179 (98%) disseminated AMNs. Excluding mitogen-activated protein kinase genes and GNAS due to their ubiquitous nature, collective genomic alterations in TP53 , SMAD4 , CDKN2A , and the mTOR genes were associated with older mean age, higher AJCC/WHO histologic grade, lymphovascular invasion, perineural invasion, regional lymph node metastasis, and lower mean PCI ( p  &lt; 0.040). Patients harboring TP53 , SMAD4 , ATM , CDKN2A , and/or mTOR gene alterations were found to have lower OS rates of 55% at 5 years and 14% at 10 years, compared with 88% at 5 years and 88% at 10 years for patients without the aforementioned alterations ( p  &lt; 0.001). Based on univariate and multivariate analyses, genomic alterations in TP53 , SMAD4 , ATM , CDKN2A , and/or the mTOR genes in disseminated AMNs were a negative prognostic factor for OS and independent of AJCC/WHO histologic grade, PCI, CC score, and hyperthermic intraperitoneal chemotherapy treatment ( p  = 0.006). Conclusions Targeted NGS improves the prognostic assessment of patients with disseminated AMNs and identifies patients who may require increased surveillance and/or aggressive management.</description><identifier>ISSN: 1068-9265</identifier><identifier>EISSN: 1534-4681</identifier><identifier>DOI: 10.1245/s10434-023-13721-y</identifier><identifier>PMID: 37314541</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Chemotherapy ; Genomics ; Kinases ; Lymph nodes ; MAP kinase ; Medicine ; Medicine &amp; Public Health ; Metastases ; Next-generation sequencing ; Oncology ; p53 Protein ; Smad4 protein ; Surgery ; Surgical Oncology ; TOR protein ; Translational Research ; Tumors</subject><ispartof>Annals of surgical oncology, 2023-11, Vol.30 (12), p.7517-7526</ispartof><rights>Society of Surgical Oncology 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2023. Society of Surgical Oncology.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c326t-e35148859e707bdd7fb5dbe1ddccae64ec56a81e5d2962872ca26b6169ff821c3</cites><orcidid>0000-0003-3930-7096</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1245/s10434-023-13721-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1245/s10434-023-13721-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,777,781,27905,27906,41469,42538,51300</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37314541$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wald, Abigail I.</creatorcontrib><creatorcontrib>Pingpank, James F.</creatorcontrib><creatorcontrib>Ongchin, Melanie</creatorcontrib><creatorcontrib>Hall, Lauren B.</creatorcontrib><creatorcontrib>Jones, Heather</creatorcontrib><creatorcontrib>Altpeter, Shannon</creatorcontrib><creatorcontrib>Liebdzinski, Michelle</creatorcontrib><creatorcontrib>Hamed, Ahmed B.</creatorcontrib><creatorcontrib>Derby, Joshua</creatorcontrib><creatorcontrib>Nikiforova, Marina N.</creatorcontrib><creatorcontrib>Bell, Phoenix D.</creatorcontrib><creatorcontrib>Paniccia, Alessandro</creatorcontrib><creatorcontrib>Zureikat, Amer H.</creatorcontrib><creatorcontrib>Gorantla, Vikram C.</creatorcontrib><creatorcontrib>Rhee, John C.</creatorcontrib><creatorcontrib>Thomas, Roby</creatorcontrib><creatorcontrib>Bartlett, David L.</creatorcontrib><creatorcontrib>Smith, Katelyn</creatorcontrib><creatorcontrib>Henn, Patrick</creatorcontrib><creatorcontrib>Theisen, Brian K.</creatorcontrib><creatorcontrib>Shyu, Susan</creatorcontrib><creatorcontrib>Shalaby, Akram</creatorcontrib><creatorcontrib>Choudry, M. Haroon A.</creatorcontrib><creatorcontrib>Singhi, Aatur D.</creatorcontrib><title>Targeted Next-Generation Sequencing Improves the Prognostication of Patients with Disseminated Appendiceal Mucinous Neoplasms (Pseudomyxoma Peritonei)</title><title>Annals of surgical oncology</title><addtitle>Ann Surg Oncol</addtitle><addtitle>Ann Surg Oncol</addtitle><description>Background Appendiceal mucinous neoplasms (AMNs) with disseminated disease (pseudomyxoma peritonei) are heterogeneous tumors with variable clinicopathologic behavior. Despite the development of prognostic systems, objective biomarkers are needed to stratify patients. With the advent of next-generation sequencing (NGS), it remains unclear if molecular testing can improve the evaluation of disseminated AMN patients. Methods Targeted NGS was performed for 183 patients and correlated with clinicopathologic features to include American Joint Committee on Cancer/World Health Organization (AJCC/WHO) histologic grade, peritoneal cancer index (PCI), completeness of cytoreduction (CC) score, and overall survival (OS). Results Genomic alterations were identified for 179 (98%) disseminated AMNs. Excluding mitogen-activated protein kinase genes and GNAS due to their ubiquitous nature, collective genomic alterations in TP53 , SMAD4 , CDKN2A , and the mTOR genes were associated with older mean age, higher AJCC/WHO histologic grade, lymphovascular invasion, perineural invasion, regional lymph node metastasis, and lower mean PCI ( p  &lt; 0.040). Patients harboring TP53 , SMAD4 , ATM , CDKN2A , and/or mTOR gene alterations were found to have lower OS rates of 55% at 5 years and 14% at 10 years, compared with 88% at 5 years and 88% at 10 years for patients without the aforementioned alterations ( p  &lt; 0.001). Based on univariate and multivariate analyses, genomic alterations in TP53 , SMAD4 , ATM , CDKN2A , and/or the mTOR genes in disseminated AMNs were a negative prognostic factor for OS and independent of AJCC/WHO histologic grade, PCI, CC score, and hyperthermic intraperitoneal chemotherapy treatment ( p  = 0.006). Conclusions Targeted NGS improves the prognostic assessment of patients with disseminated AMNs and identifies patients who may require increased surveillance and/or aggressive management.</description><subject>Chemotherapy</subject><subject>Genomics</subject><subject>Kinases</subject><subject>Lymph nodes</subject><subject>MAP kinase</subject><subject>Medicine</subject><subject>Medicine &amp; Public Health</subject><subject>Metastases</subject><subject>Next-generation sequencing</subject><subject>Oncology</subject><subject>p53 Protein</subject><subject>Smad4 protein</subject><subject>Surgery</subject><subject>Surgical Oncology</subject><subject>TOR protein</subject><subject>Translational Research</subject><subject>Tumors</subject><issn>1068-9265</issn><issn>1534-4681</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><recordid>eNp9kc1u1TAQhSMEoqXwAiyQJTZlEfB_nGXVQlupwJUo68ixJ7euEjvYDvS-CM-Lb1NAYsFqRjPfnJnRqaqXBL8llIt3iWDOeI0pqwlrKKl3j6pDIkqJS0UelxxLVbdUioPqWUq3GJOGYfG0OmANI1xwclj9vNZxCxks-gR3uT4HD1FnFzz6At8W8Mb5Lbqc5hi-Q0L5BtAmhq0PKTuzcmFAm5KBzwn9cPkGnbmUYHJe71VP5hm8dQb0iD4uRS0sqawK86jTlNDxJsFiw7S7C5NGG4guBw_uzfPqyaDHBC8e4lH19cP769OL-urz-eXpyVVtGJW5BiYIV0q00OCmt7YZemF7INYao0FyMEJqRUBY2kqqGmo0lb0ksh0GRYlhR9XxqlseLO-m3E0uGRhH7aFc2lFFhcItpW1BX_-D3oYl-nJdoRouuWrknqIrZWJIKcLQzdFNOu46gru9a93qWldc6-5d63Zl6NWD9NJPYP-M_LapAGwFUmn5LcS_u_8j-wukc6av</recordid><startdate>20231101</startdate><enddate>20231101</enddate><creator>Wald, Abigail I.</creator><creator>Pingpank, James F.</creator><creator>Ongchin, Melanie</creator><creator>Hall, Lauren B.</creator><creator>Jones, Heather</creator><creator>Altpeter, Shannon</creator><creator>Liebdzinski, Michelle</creator><creator>Hamed, Ahmed B.</creator><creator>Derby, Joshua</creator><creator>Nikiforova, Marina N.</creator><creator>Bell, Phoenix D.</creator><creator>Paniccia, Alessandro</creator><creator>Zureikat, Amer H.</creator><creator>Gorantla, Vikram C.</creator><creator>Rhee, John C.</creator><creator>Thomas, Roby</creator><creator>Bartlett, David L.</creator><creator>Smith, Katelyn</creator><creator>Henn, Patrick</creator><creator>Theisen, Brian K.</creator><creator>Shyu, Susan</creator><creator>Shalaby, Akram</creator><creator>Choudry, M. Haroon A.</creator><creator>Singhi, Aatur D.</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TO</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>H94</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-3930-7096</orcidid></search><sort><creationdate>20231101</creationdate><title>Targeted Next-Generation Sequencing Improves the Prognostication of Patients with Disseminated Appendiceal Mucinous Neoplasms (Pseudomyxoma Peritonei)</title><author>Wald, Abigail I. ; Pingpank, James F. ; Ongchin, Melanie ; Hall, Lauren B. ; Jones, Heather ; Altpeter, Shannon ; Liebdzinski, Michelle ; Hamed, Ahmed B. ; Derby, Joshua ; Nikiforova, Marina N. ; Bell, Phoenix D. ; Paniccia, Alessandro ; Zureikat, Amer H. ; Gorantla, Vikram C. ; Rhee, John C. ; Thomas, Roby ; Bartlett, David L. ; Smith, Katelyn ; Henn, Patrick ; Theisen, Brian K. ; Shyu, Susan ; Shalaby, Akram ; Choudry, M. 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Haroon A.</au><au>Singhi, Aatur D.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Targeted Next-Generation Sequencing Improves the Prognostication of Patients with Disseminated Appendiceal Mucinous Neoplasms (Pseudomyxoma Peritonei)</atitle><jtitle>Annals of surgical oncology</jtitle><stitle>Ann Surg Oncol</stitle><addtitle>Ann Surg Oncol</addtitle><date>2023-11-01</date><risdate>2023</risdate><volume>30</volume><issue>12</issue><spage>7517</spage><epage>7526</epage><pages>7517-7526</pages><issn>1068-9265</issn><eissn>1534-4681</eissn><abstract>Background Appendiceal mucinous neoplasms (AMNs) with disseminated disease (pseudomyxoma peritonei) are heterogeneous tumors with variable clinicopathologic behavior. Despite the development of prognostic systems, objective biomarkers are needed to stratify patients. With the advent of next-generation sequencing (NGS), it remains unclear if molecular testing can improve the evaluation of disseminated AMN patients. Methods Targeted NGS was performed for 183 patients and correlated with clinicopathologic features to include American Joint Committee on Cancer/World Health Organization (AJCC/WHO) histologic grade, peritoneal cancer index (PCI), completeness of cytoreduction (CC) score, and overall survival (OS). Results Genomic alterations were identified for 179 (98%) disseminated AMNs. Excluding mitogen-activated protein kinase genes and GNAS due to their ubiquitous nature, collective genomic alterations in TP53 , SMAD4 , CDKN2A , and the mTOR genes were associated with older mean age, higher AJCC/WHO histologic grade, lymphovascular invasion, perineural invasion, regional lymph node metastasis, and lower mean PCI ( p  &lt; 0.040). Patients harboring TP53 , SMAD4 , ATM , CDKN2A , and/or mTOR gene alterations were found to have lower OS rates of 55% at 5 years and 14% at 10 years, compared with 88% at 5 years and 88% at 10 years for patients without the aforementioned alterations ( p  &lt; 0.001). Based on univariate and multivariate analyses, genomic alterations in TP53 , SMAD4 , ATM , CDKN2A , and/or the mTOR genes in disseminated AMNs were a negative prognostic factor for OS and independent of AJCC/WHO histologic grade, PCI, CC score, and hyperthermic intraperitoneal chemotherapy treatment ( p  = 0.006). Conclusions Targeted NGS improves the prognostic assessment of patients with disseminated AMNs and identifies patients who may require increased surveillance and/or aggressive management.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>37314541</pmid><doi>10.1245/s10434-023-13721-y</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0003-3930-7096</orcidid></addata></record>
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subjects Chemotherapy
Genomics
Kinases
Lymph nodes
MAP kinase
Medicine
Medicine & Public Health
Metastases
Next-generation sequencing
Oncology
p53 Protein
Smad4 protein
Surgery
Surgical Oncology
TOR protein
Translational Research
Tumors
title Targeted Next-Generation Sequencing Improves the Prognostication of Patients with Disseminated Appendiceal Mucinous Neoplasms (Pseudomyxoma Peritonei)
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