The complete plastid genome and characteristics analysis of Achillea millefolium
Achillea is a crop with Chinese herbal characteristics and horticultural values. Its leaves and flowers contain aromatic oil, and the ripe herb can also be used as medicine to induce sweat and relieve rheumatic pains. It is seen cultivated in gardens all over China. Currently, the most comprehensive...
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| Veröffentlicht in: | Functional & integrative genomics 2023-06, Vol.23 (2), p.192-192, Article 192 |
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| creator | Liu, Fenxiang Movahedi, Ali Yang, Wenguo Xu, Dezhi Jiang, Chuanbei |
| description | Achillea
is a crop with Chinese herbal characteristics and horticultural values. Its leaves and flowers contain aromatic oil, and the ripe herb can also be used as medicine to induce sweat and relieve rheumatic pains. It is seen cultivated in gardens all over China. Currently, the most comprehensive chloroplast genome sample involved in the study refers to New World clades of
Achillea
, which are used for marker selection and phylogenetic research. We completely sequenced the chloroplast genomes of
Achillea millefolium
. These sequencing results showed that the plastid genome is 149,078 bp in size and possesses a typical quadripartite structure containing one large single copy (LSC) with 82,352 bp, one small single copy (SSC) with 18,426 bp, and a pair of inverted repeat (IR) regions with 24,150 bp in
Achillea millefolium
. The chloroplast genome encodes a common number of genes, of which 88 are protein-coding genes, 37 transfer ribonucleic acid genes, and 8 ribosomal ribonucleic acid genes, which are highly similar in overall size, genome structure, gene content, and sequence. The exact similarity was observed when compared to other Asteraceae species. However, there were structural differences due to the restriction or extension of the inverted repeat (IR) regions—the palindromic repeats being the most prevalent form. Based on 12 whole-plastomes, 3 hypervariable regions (rpoB, rbcL, and petL-trnP-UGG) were discovered, which could be used as potential molecular markers. |
| doi_str_mv | 10.1007/s10142-023-01121-0 |
| format | Article |
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is a crop with Chinese herbal characteristics and horticultural values. Its leaves and flowers contain aromatic oil, and the ripe herb can also be used as medicine to induce sweat and relieve rheumatic pains. It is seen cultivated in gardens all over China. Currently, the most comprehensive chloroplast genome sample involved in the study refers to New World clades of
Achillea
, which are used for marker selection and phylogenetic research. We completely sequenced the chloroplast genomes of
Achillea millefolium
. These sequencing results showed that the plastid genome is 149,078 bp in size and possesses a typical quadripartite structure containing one large single copy (LSC) with 82,352 bp, one small single copy (SSC) with 18,426 bp, and a pair of inverted repeat (IR) regions with 24,150 bp in
Achillea millefolium
. The chloroplast genome encodes a common number of genes, of which 88 are protein-coding genes, 37 transfer ribonucleic acid genes, and 8 ribosomal ribonucleic acid genes, which are highly similar in overall size, genome structure, gene content, and sequence. The exact similarity was observed when compared to other Asteraceae species. However, there were structural differences due to the restriction or extension of the inverted repeat (IR) regions—the palindromic repeats being the most prevalent form. Based on 12 whole-plastomes, 3 hypervariable regions (rpoB, rbcL, and petL-trnP-UGG) were discovered, which could be used as potential molecular markers.</description><identifier>ISSN: 1438-793X</identifier><identifier>EISSN: 1438-7948</identifier><identifier>DOI: 10.1007/s10142-023-01121-0</identifier><identifier>PMID: 37256437</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Achillea ; Achillea - genetics ; Achillea millefolium ; Animal Genetics and Genomics ; Biochemistry ; Bioinformatics ; Biomedical and Life Sciences ; Cell Biology ; Chloroplasts ; Flowers ; Genome, Chloroplast ; Genomes ; Herbal medicine ; Inverted repeat ; Life Sciences ; Microbial Genetics and Genomics ; Nucleotide sequence ; Original Article ; Phylogeny ; Plant Genetics and Genomics ; Plastomes ; RNA ; RpoB protein ; Sequence Analysis, DNA - methods</subject><ispartof>Functional & integrative genomics, 2023-06, Vol.23 (2), p.192-192, Article 192</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-e3fe8f7c1754f3552c46f48322bf415f9d86303b797b7a9d63855554d868927c3</citedby><cites>FETCH-LOGICAL-c375t-e3fe8f7c1754f3552c46f48322bf415f9d86303b797b7a9d63855554d868927c3</cites><orcidid>0000-0001-5062-504X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10142-023-01121-0$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10142-023-01121-0$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37256437$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liu, Fenxiang</creatorcontrib><creatorcontrib>Movahedi, Ali</creatorcontrib><creatorcontrib>Yang, Wenguo</creatorcontrib><creatorcontrib>Xu, Dezhi</creatorcontrib><creatorcontrib>Jiang, Chuanbei</creatorcontrib><title>The complete plastid genome and characteristics analysis of Achillea millefolium</title><title>Functional & integrative genomics</title><addtitle>Funct Integr Genomics</addtitle><addtitle>Funct Integr Genomics</addtitle><description>Achillea
is a crop with Chinese herbal characteristics and horticultural values. Its leaves and flowers contain aromatic oil, and the ripe herb can also be used as medicine to induce sweat and relieve rheumatic pains. It is seen cultivated in gardens all over China. Currently, the most comprehensive chloroplast genome sample involved in the study refers to New World clades of
Achillea
, which are used for marker selection and phylogenetic research. We completely sequenced the chloroplast genomes of
Achillea millefolium
. These sequencing results showed that the plastid genome is 149,078 bp in size and possesses a typical quadripartite structure containing one large single copy (LSC) with 82,352 bp, one small single copy (SSC) with 18,426 bp, and a pair of inverted repeat (IR) regions with 24,150 bp in
Achillea millefolium
. The chloroplast genome encodes a common number of genes, of which 88 are protein-coding genes, 37 transfer ribonucleic acid genes, and 8 ribosomal ribonucleic acid genes, which are highly similar in overall size, genome structure, gene content, and sequence. The exact similarity was observed when compared to other Asteraceae species. However, there were structural differences due to the restriction or extension of the inverted repeat (IR) regions—the palindromic repeats being the most prevalent form. Based on 12 whole-plastomes, 3 hypervariable regions (rpoB, rbcL, and petL-trnP-UGG) were discovered, which could be used as potential molecular markers.</description><subject>Achillea</subject><subject>Achillea - genetics</subject><subject>Achillea millefolium</subject><subject>Animal Genetics and Genomics</subject><subject>Biochemistry</subject><subject>Bioinformatics</subject><subject>Biomedical and Life Sciences</subject><subject>Cell Biology</subject><subject>Chloroplasts</subject><subject>Flowers</subject><subject>Genome, Chloroplast</subject><subject>Genomes</subject><subject>Herbal medicine</subject><subject>Inverted repeat</subject><subject>Life Sciences</subject><subject>Microbial Genetics and Genomics</subject><subject>Nucleotide sequence</subject><subject>Original Article</subject><subject>Phylogeny</subject><subject>Plant Genetics and Genomics</subject><subject>Plastomes</subject><subject>RNA</subject><subject>RpoB protein</subject><subject>Sequence Analysis, DNA - methods</subject><issn>1438-793X</issn><issn>1438-7948</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp9kLtOwzAUhi0EoqXwAgwoEgtLwLfEzlhV3CQkGIrEZjmO3aZy4mAnQ98el5QiMeDlWOd857f8AXCJ4C2CkN0FBBHFKcQkhQhhlMIjMEWU8JQVlB8f7uRjAs5C2EAIM1iQUzAhDGc5JWwK3pZrnSjXdFb3OumsDH1dJSvdukYnsq0StZZeql77Ok5UiD1pt6EOiTPJXK1ra7VMml0xztZDcw5OjLRBX-zrDLw_3C8XT-nL6-PzYv6SKsKyPtXEaG6YQiyjhmQZVjQ3lBOMS0NRZoqK5wSSkhWsZLKocsKzeGhs8wIzRWbgZsztvPscdOhFUwelrZWtdkMQmGNEKOQxcwau_6AbN_j4j5FCEYE7Co-U8i4Er43ofN1IvxUIip1vMfoW0bf49i1gXLraRw9lo6vDyo_gCJARCHHUrrT_ffuf2C_QJomJ</recordid><startdate>20230601</startdate><enddate>20230601</enddate><creator>Liu, Fenxiang</creator><creator>Movahedi, Ali</creator><creator>Yang, Wenguo</creator><creator>Xu, Dezhi</creator><creator>Jiang, Chuanbei</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PADUT</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-5062-504X</orcidid></search><sort><creationdate>20230601</creationdate><title>The complete plastid genome and characteristics analysis of Achillea millefolium</title><author>Liu, Fenxiang ; Movahedi, Ali ; Yang, Wenguo ; Xu, Dezhi ; Jiang, Chuanbei</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-e3fe8f7c1754f3552c46f48322bf415f9d86303b797b7a9d63855554d868927c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Achillea</topic><topic>Achillea - genetics</topic><topic>Achillea millefolium</topic><topic>Animal Genetics and Genomics</topic><topic>Biochemistry</topic><topic>Bioinformatics</topic><topic>Biomedical and Life Sciences</topic><topic>Cell Biology</topic><topic>Chloroplasts</topic><topic>Flowers</topic><topic>Genome, Chloroplast</topic><topic>Genomes</topic><topic>Herbal medicine</topic><topic>Inverted repeat</topic><topic>Life Sciences</topic><topic>Microbial Genetics and Genomics</topic><topic>Nucleotide sequence</topic><topic>Original Article</topic><topic>Phylogeny</topic><topic>Plant Genetics and Genomics</topic><topic>Plastomes</topic><topic>RNA</topic><topic>RpoB protein</topic><topic>Sequence Analysis, DNA - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Fenxiang</creatorcontrib><creatorcontrib>Movahedi, Ali</creatorcontrib><creatorcontrib>Yang, Wenguo</creatorcontrib><creatorcontrib>Xu, Dezhi</creatorcontrib><creatorcontrib>Jiang, Chuanbei</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Research Library China</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Functional & integrative genomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liu, Fenxiang</au><au>Movahedi, Ali</au><au>Yang, Wenguo</au><au>Xu, Dezhi</au><au>Jiang, Chuanbei</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete plastid genome and characteristics analysis of Achillea millefolium</atitle><jtitle>Functional & integrative genomics</jtitle><stitle>Funct Integr Genomics</stitle><addtitle>Funct Integr Genomics</addtitle><date>2023-06-01</date><risdate>2023</risdate><volume>23</volume><issue>2</issue><spage>192</spage><epage>192</epage><pages>192-192</pages><artnum>192</artnum><issn>1438-793X</issn><eissn>1438-7948</eissn><abstract>Achillea
is a crop with Chinese herbal characteristics and horticultural values. Its leaves and flowers contain aromatic oil, and the ripe herb can also be used as medicine to induce sweat and relieve rheumatic pains. It is seen cultivated in gardens all over China. Currently, the most comprehensive chloroplast genome sample involved in the study refers to New World clades of
Achillea
, which are used for marker selection and phylogenetic research. We completely sequenced the chloroplast genomes of
Achillea millefolium
. These sequencing results showed that the plastid genome is 149,078 bp in size and possesses a typical quadripartite structure containing one large single copy (LSC) with 82,352 bp, one small single copy (SSC) with 18,426 bp, and a pair of inverted repeat (IR) regions with 24,150 bp in
Achillea millefolium
. The chloroplast genome encodes a common number of genes, of which 88 are protein-coding genes, 37 transfer ribonucleic acid genes, and 8 ribosomal ribonucleic acid genes, which are highly similar in overall size, genome structure, gene content, and sequence. The exact similarity was observed when compared to other Asteraceae species. However, there were structural differences due to the restriction or extension of the inverted repeat (IR) regions—the palindromic repeats being the most prevalent form. Based on 12 whole-plastomes, 3 hypervariable regions (rpoB, rbcL, and petL-trnP-UGG) were discovered, which could be used as potential molecular markers.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>37256437</pmid><doi>10.1007/s10142-023-01121-0</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0001-5062-504X</orcidid></addata></record> |
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| subjects | Achillea Achillea - genetics Achillea millefolium Animal Genetics and Genomics Biochemistry Bioinformatics Biomedical and Life Sciences Cell Biology Chloroplasts Flowers Genome, Chloroplast Genomes Herbal medicine Inverted repeat Life Sciences Microbial Genetics and Genomics Nucleotide sequence Original Article Phylogeny Plant Genetics and Genomics Plastomes RNA RpoB protein Sequence Analysis, DNA - methods |
| title | The complete plastid genome and characteristics analysis of Achillea millefolium |
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