m6A Regulator-mediated RNA Methylation Modulates Immune Microenvironment of Hepatitis B Virus-related Acute Liver Failure
— Acute liver failure (ALF) is a rare and complicated disease with a high mortality rate. Emergency liver transplantation is the only treatment method that can improve the ALF prognosis. However, its clinical application remains limited owing to the aggressive nature of liver transplantation, limite...
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Acute liver failure (ALF) is a rare and complicated disease with a high mortality rate. Emergency liver transplantation is the only treatment method that can improve the ALF prognosis. However, its clinical application remains limited owing to the aggressive nature of liver transplantation, limited donors, and high postoperative mortality. The study investigated the effect of m6A on the immune microenvironment of hepatitis B virus-related ALF (HBV-ALF). In this study, the gene expression data of 47 normal people and 42 HBV-ALF patients were downloaded from the Gene Expression Omnibu (GEO) database. The known 23 m6A regulators which mediated RNA modification patterns were compared and analyzed in these two groups, and the gene diagnosis model of HBV-ALF patients was established based on the analysis results. In addition, we used unsupervised clustering to identify different m6A RNA methylation modification patterns in HBV-ALF based on m6A regulators, and evaluated the immune infiltration and biological differences in these subtypes. In addition, the relationship between m6A genes and immune cell activation in HBV-ACLF patients was explored by immune infiltration analysis. Nineteen m6A regulators mediated RNA methylation (m6A regulators for short) were differentially expressed in HBV-ALF and control groups. m6A regulators could well distinguish control samples from HBV-ALF samples, and m6A regulators might be used as a basis for diagnosing HBV-ALF patients. Immune cells such as activated CD8 T cells, activated B cells, and activated CD4 T cells might play important roles in HBV-ALF, and m6A regulators were closely associated with immune cell infiltration. ALKBH15, CBLL1, IGF2BP2, IGF2BP3, and ZC3H13 were significantly associated with immune cells. Considering 23 m6A regulators, HBV-ALF patients could be classified into two subtypes (cluster 1 and cluster 2) based on different immune cell infiltration. m6A regulators of the IGFBP and YHDF families have extremely different levels in these two subtypes. Differential immune cell infiltration among these subtypes was observed, a total of 913 differentially expressed genes among different m6A modification patterns was identified, and their biological functions were explored. m6A modification might play a crucial role in the diverse and complex immune microenvironment of HBV-ALF patients. |
doi_str_mv | 10.1007/s10753-023-01841-2 |
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Acute liver failure (ALF) is a rare and complicated disease with a high mortality rate. Emergency liver transplantation is the only treatment method that can improve the ALF prognosis. However, its clinical application remains limited owing to the aggressive nature of liver transplantation, limited donors, and high postoperative mortality. The study investigated the effect of m6A on the immune microenvironment of hepatitis B virus-related ALF (HBV-ALF). In this study, the gene expression data of 47 normal people and 42 HBV-ALF patients were downloaded from the Gene Expression Omnibu (GEO) database. The known 23 m6A regulators which mediated RNA modification patterns were compared and analyzed in these two groups, and the gene diagnosis model of HBV-ALF patients was established based on the analysis results. In addition, we used unsupervised clustering to identify different m6A RNA methylation modification patterns in HBV-ALF based on m6A regulators, and evaluated the immune infiltration and biological differences in these subtypes. In addition, the relationship between m6A genes and immune cell activation in HBV-ACLF patients was explored by immune infiltration analysis. Nineteen m6A regulators mediated RNA methylation (m6A regulators for short) were differentially expressed in HBV-ALF and control groups. m6A regulators could well distinguish control samples from HBV-ALF samples, and m6A regulators might be used as a basis for diagnosing HBV-ALF patients. Immune cells such as activated CD8 T cells, activated B cells, and activated CD4 T cells might play important roles in HBV-ALF, and m6A regulators were closely associated with immune cell infiltration. ALKBH15, CBLL1, IGF2BP2, IGF2BP3, and ZC3H13 were significantly associated with immune cells. Considering 23 m6A regulators, HBV-ALF patients could be classified into two subtypes (cluster 1 and cluster 2) based on different immune cell infiltration. m6A regulators of the IGFBP and YHDF families have extremely different levels in these two subtypes. Differential immune cell infiltration among these subtypes was observed, a total of 913 differentially expressed genes among different m6A modification patterns was identified, and their biological functions were explored. m6A modification might play a crucial role in the diverse and complex immune microenvironment of HBV-ALF patients.</description><identifier>ISSN: 0360-3997</identifier><identifier>EISSN: 1573-2576</identifier><identifier>DOI: 10.1007/s10753-023-01841-2</identifier><identifier>PMID: 37256461</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Antigen-Antibody Complex ; B-Lymphocytes ; Biomedical and Life Sciences ; Biomedicine ; CD4 antigen ; CD8 antigen ; Cell activation ; Gene expression ; Hepatitis B ; Hepatitis B virus - genetics ; Humans ; Immunology ; Infiltration ; Internal Medicine ; Liver ; Liver failure ; Liver transplantation ; Lymphocytes B ; Lymphocytes T ; Methylation ; Microenvironments ; Mortality ; N6-methyladenosine ; Pathology ; Patients ; Pharmacology/Toxicology ; Rheumatology ; RNA ; RNA modification ; RNA-Binding Proteins ; Transcription activation ; Ubiquitin-Protein Ligases</subject><ispartof>Inflammation, 2023-10, Vol.46 (5), p.1777-1795</ispartof><rights>The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2023. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-88c16bfbe245891d093d4f4b3aa21dde1c6552291d46d197c6b901445c9d4db93</citedby><cites>FETCH-LOGICAL-c375t-88c16bfbe245891d093d4f4b3aa21dde1c6552291d46d197c6b901445c9d4db93</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10753-023-01841-2$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10753-023-01841-2$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37256461$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Dingchun</creatorcontrib><creatorcontrib>Liu, Ye</creatorcontrib><creatorcontrib>Zhou, Ju</creatorcontrib><creatorcontrib>Chen, Yihui</creatorcontrib><creatorcontrib>Yang, Chunxia</creatorcontrib><creatorcontrib>Liu, Huaie</creatorcontrib><creatorcontrib>Li, Wu</creatorcontrib><creatorcontrib>You, Jing</creatorcontrib><title>m6A Regulator-mediated RNA Methylation Modulates Immune Microenvironment of Hepatitis B Virus-related Acute Liver Failure</title><title>Inflammation</title><addtitle>Inflammation</addtitle><addtitle>Inflammation</addtitle><description>—
Acute liver failure (ALF) is a rare and complicated disease with a high mortality rate. Emergency liver transplantation is the only treatment method that can improve the ALF prognosis. However, its clinical application remains limited owing to the aggressive nature of liver transplantation, limited donors, and high postoperative mortality. The study investigated the effect of m6A on the immune microenvironment of hepatitis B virus-related ALF (HBV-ALF). In this study, the gene expression data of 47 normal people and 42 HBV-ALF patients were downloaded from the Gene Expression Omnibu (GEO) database. The known 23 m6A regulators which mediated RNA modification patterns were compared and analyzed in these two groups, and the gene diagnosis model of HBV-ALF patients was established based on the analysis results. In addition, we used unsupervised clustering to identify different m6A RNA methylation modification patterns in HBV-ALF based on m6A regulators, and evaluated the immune infiltration and biological differences in these subtypes. In addition, the relationship between m6A genes and immune cell activation in HBV-ACLF patients was explored by immune infiltration analysis. Nineteen m6A regulators mediated RNA methylation (m6A regulators for short) were differentially expressed in HBV-ALF and control groups. m6A regulators could well distinguish control samples from HBV-ALF samples, and m6A regulators might be used as a basis for diagnosing HBV-ALF patients. Immune cells such as activated CD8 T cells, activated B cells, and activated CD4 T cells might play important roles in HBV-ALF, and m6A regulators were closely associated with immune cell infiltration. ALKBH15, CBLL1, IGF2BP2, IGF2BP3, and ZC3H13 were significantly associated with immune cells. Considering 23 m6A regulators, HBV-ALF patients could be classified into two subtypes (cluster 1 and cluster 2) based on different immune cell infiltration. m6A regulators of the IGFBP and YHDF families have extremely different levels in these two subtypes. Differential immune cell infiltration among these subtypes was observed, a total of 913 differentially expressed genes among different m6A modification patterns was identified, and their biological functions were explored. m6A modification might play a crucial role in the diverse and complex immune microenvironment of HBV-ALF patients.</description><subject>Antigen-Antibody Complex</subject><subject>B-Lymphocytes</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>CD4 antigen</subject><subject>CD8 antigen</subject><subject>Cell activation</subject><subject>Gene expression</subject><subject>Hepatitis B</subject><subject>Hepatitis B virus - genetics</subject><subject>Humans</subject><subject>Immunology</subject><subject>Infiltration</subject><subject>Internal Medicine</subject><subject>Liver</subject><subject>Liver failure</subject><subject>Liver transplantation</subject><subject>Lymphocytes B</subject><subject>Lymphocytes T</subject><subject>Methylation</subject><subject>Microenvironments</subject><subject>Mortality</subject><subject>N6-methyladenosine</subject><subject>Pathology</subject><subject>Patients</subject><subject>Pharmacology/Toxicology</subject><subject>Rheumatology</subject><subject>RNA</subject><subject>RNA modification</subject><subject>RNA-Binding Proteins</subject><subject>Transcription activation</subject><subject>Ubiquitin-Protein Ligases</subject><issn>0360-3997</issn><issn>1573-2576</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp9kU2LFDEQhoMo7jj6BzxIwIuX1nx_HMdl112YUVjUa-juVK9Zujtj0lmYf29mZ1Xw4KEIVD31VnhfhF5T8p4Soj9kSrTkDWG1qBG0YU_QikrNGya1eopWhCvScGv1GXqR8x0hxFjDn6MzrplUQtEVOkxqg2_gtoztElMzgQ_tAh7ffN7gHSw_DrUf4ox30R8RyPh6msoMeBf6FGG-DynOE8wLjgO-gn2ll5DxR_w9pJKbBOOD3KYvC-BtuIeEL9swlgQv0bOhHTO8enzX6Nvlxdfzq2b75dP1-Wbb9FzLpTGmp6obOmBCGks9sdyLQXS8bRn1HmivpGSsToTy1OpedZZQIWRvvfCd5Wv07qS7T_Fngby4KeQexrGdIZbsmGGUC6LNEX37D3oXS5rr7yqlpeJGVHfXiJ2oakDOCQa3T2Fq08FR4o7BuFMwrgbjHoJxrC69eZQuXTX5z8rvJCrAT0Cuo_kW0t_b_5H9BbdSmLg</recordid><startdate>20231001</startdate><enddate>20231001</enddate><creator>Li, Dingchun</creator><creator>Liu, Ye</creator><creator>Zhou, Ju</creator><creator>Chen, Yihui</creator><creator>Yang, Chunxia</creator><creator>Liu, Huaie</creator><creator>Li, Wu</creator><creator>You, Jing</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7T5</scope><scope>7TO</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>H94</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope></search><sort><creationdate>20231001</creationdate><title>m6A Regulator-mediated RNA Methylation Modulates Immune Microenvironment of Hepatitis B Virus-related Acute Liver Failure</title><author>Li, Dingchun ; Liu, Ye ; Zhou, Ju ; Chen, Yihui ; Yang, Chunxia ; Liu, Huaie ; Li, Wu ; You, Jing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-88c16bfbe245891d093d4f4b3aa21dde1c6552291d46d197c6b901445c9d4db93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Antigen-Antibody Complex</topic><topic>B-Lymphocytes</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>CD4 antigen</topic><topic>CD8 antigen</topic><topic>Cell activation</topic><topic>Gene expression</topic><topic>Hepatitis B</topic><topic>Hepatitis B virus - genetics</topic><topic>Humans</topic><topic>Immunology</topic><topic>Infiltration</topic><topic>Internal Medicine</topic><topic>Liver</topic><topic>Liver failure</topic><topic>Liver transplantation</topic><topic>Lymphocytes B</topic><topic>Lymphocytes T</topic><topic>Methylation</topic><topic>Microenvironments</topic><topic>Mortality</topic><topic>N6-methyladenosine</topic><topic>Pathology</topic><topic>Patients</topic><topic>Pharmacology/Toxicology</topic><topic>Rheumatology</topic><topic>RNA</topic><topic>RNA modification</topic><topic>RNA-Binding Proteins</topic><topic>Transcription activation</topic><topic>Ubiquitin-Protein Ligases</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Dingchun</creatorcontrib><creatorcontrib>Liu, Ye</creatorcontrib><creatorcontrib>Zhou, Ju</creatorcontrib><creatorcontrib>Chen, Yihui</creatorcontrib><creatorcontrib>Yang, Chunxia</creatorcontrib><creatorcontrib>Liu, Huaie</creatorcontrib><creatorcontrib>Li, Wu</creatorcontrib><creatorcontrib>You, Jing</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Immunology Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>MEDLINE - Academic</collection><jtitle>Inflammation</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Dingchun</au><au>Liu, Ye</au><au>Zhou, Ju</au><au>Chen, Yihui</au><au>Yang, Chunxia</au><au>Liu, Huaie</au><au>Li, Wu</au><au>You, Jing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>m6A Regulator-mediated RNA Methylation Modulates Immune Microenvironment of Hepatitis B Virus-related Acute Liver Failure</atitle><jtitle>Inflammation</jtitle><stitle>Inflammation</stitle><addtitle>Inflammation</addtitle><date>2023-10-01</date><risdate>2023</risdate><volume>46</volume><issue>5</issue><spage>1777</spage><epage>1795</epage><pages>1777-1795</pages><issn>0360-3997</issn><eissn>1573-2576</eissn><abstract>—
Acute liver failure (ALF) is a rare and complicated disease with a high mortality rate. Emergency liver transplantation is the only treatment method that can improve the ALF prognosis. However, its clinical application remains limited owing to the aggressive nature of liver transplantation, limited donors, and high postoperative mortality. The study investigated the effect of m6A on the immune microenvironment of hepatitis B virus-related ALF (HBV-ALF). In this study, the gene expression data of 47 normal people and 42 HBV-ALF patients were downloaded from the Gene Expression Omnibu (GEO) database. The known 23 m6A regulators which mediated RNA modification patterns were compared and analyzed in these two groups, and the gene diagnosis model of HBV-ALF patients was established based on the analysis results. In addition, we used unsupervised clustering to identify different m6A RNA methylation modification patterns in HBV-ALF based on m6A regulators, and evaluated the immune infiltration and biological differences in these subtypes. In addition, the relationship between m6A genes and immune cell activation in HBV-ACLF patients was explored by immune infiltration analysis. Nineteen m6A regulators mediated RNA methylation (m6A regulators for short) were differentially expressed in HBV-ALF and control groups. m6A regulators could well distinguish control samples from HBV-ALF samples, and m6A regulators might be used as a basis for diagnosing HBV-ALF patients. Immune cells such as activated CD8 T cells, activated B cells, and activated CD4 T cells might play important roles in HBV-ALF, and m6A regulators were closely associated with immune cell infiltration. ALKBH15, CBLL1, IGF2BP2, IGF2BP3, and ZC3H13 were significantly associated with immune cells. Considering 23 m6A regulators, HBV-ALF patients could be classified into two subtypes (cluster 1 and cluster 2) based on different immune cell infiltration. m6A regulators of the IGFBP and YHDF families have extremely different levels in these two subtypes. Differential immune cell infiltration among these subtypes was observed, a total of 913 differentially expressed genes among different m6A modification patterns was identified, and their biological functions were explored. m6A modification might play a crucial role in the diverse and complex immune microenvironment of HBV-ALF patients.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>37256461</pmid><doi>10.1007/s10753-023-01841-2</doi><tpages>19</tpages></addata></record> |
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subjects | Antigen-Antibody Complex B-Lymphocytes Biomedical and Life Sciences Biomedicine CD4 antigen CD8 antigen Cell activation Gene expression Hepatitis B Hepatitis B virus - genetics Humans Immunology Infiltration Internal Medicine Liver Liver failure Liver transplantation Lymphocytes B Lymphocytes T Methylation Microenvironments Mortality N6-methyladenosine Pathology Patients Pharmacology/Toxicology Rheumatology RNA RNA modification RNA-Binding Proteins Transcription activation Ubiquitin-Protein Ligases |
title | m6A Regulator-mediated RNA Methylation Modulates Immune Microenvironment of Hepatitis B Virus-related Acute Liver Failure |
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