Differential Expression of MicroRNAs and Predicted Drug Target in Amyotrophic Lateral Sclerosis

ALS (Amyotrophic Lateral Sclerosis) is a rare type of neurodegenerative disease. It shows progressive degradation of motor neurons in the brain and spinal cord. At present, there is no treatment available that can completely cure ALS. The available treatments can only increase a patient’s life span...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Journal of molecular neuroscience 2023-06, Vol.73 (6), p.375-390
Hauptverfasser: Patel, Riya Ben, Bajpai, Akhilesh Kumar, Thirumurugan, Kavitha
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 390
container_issue 6
container_start_page 375
container_title Journal of molecular neuroscience
container_volume 73
creator Patel, Riya Ben
Bajpai, Akhilesh Kumar
Thirumurugan, Kavitha
description ALS (Amyotrophic Lateral Sclerosis) is a rare type of neurodegenerative disease. It shows progressive degradation of motor neurons in the brain and spinal cord. At present, there is no treatment available that can completely cure ALS. The available treatments can only increase a patient’s life span by a few months. Recently, microRNAs (miRNAs), a sub-class of small non-coding RNAs have been shown to play an essential role in the diagnosis, prognosis, and therapy of ALS. Our study focuses on analyzing differential miRNA profiles and predicting drug targets in ALS using bioinformatics and computational approach. The study identifies eight highly differentially expressed miRNAs in ALS patients, four of which are novel. We identified 42 hub genes for these eight highly expressed miRNAs with Amyloid Precursor Protein ( APP) as a candidate gene among them for highly expressed down-regulated miRNA, hsa-miR-455-3p using protein–protein interaction network and Cytoscape analysis. A novel association has been found between hsa-miR-455-3p/APP/serotonergic pathway using KEGG pathway analysis. Also, molecular docking studies have revealed curcumin as a potential drug target that may be used for the treatment of ALS. Thus, the present study has identified four novel miRNA biomarkers: hsa-miR-3613-5p, hsa-miR-24, hsa-miR-3064-5p, and hsa-miR-4455. There is a formation of a novel axis, hsa-miR-455-3p/APP/serotonergic pathway, and curcumin is predicted as a potential drug target for ALS.
doi_str_mv 10.1007/s12031-023-02124-z
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2820967261</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2851486253</sourcerecordid><originalsourceid>FETCH-LOGICAL-c326t-8cf45fa0c326f48b16bed4ea6dce7e70389919f2e11773e41867a303c79879203</originalsourceid><addsrcrecordid>eNp9kEtPGzEURq2qCMLjD3RRWeqmmwE_ZvxYRkABKUBVYG05nuvUaDJO7RmJ8OtxCBSpiy6sK8vnftf3IPSFkmNKiDzJlBFOK8J4OZTV1fMnNKFNoytKhfiMJkTpplJCiz20n_MjKVRN1S7a45LVWupmgsxZ8B4S9EOwHT5_WiXIOcQeR4-vg0vx1800Y9u3-GeCNrgBWnyWxgW-t2kBAw49ni7XcUhx9Ts4PLMDpBJ05zpIMYd8iHa87TIcvdUD9PDj_P70sprdXlydTmeV40wMlXK-brwlm5uv1ZyKObQ1WNE6kCAJV1pT7RlQKiWHsoWQlhPupFZSFw0H6Ps2d5XinxHyYJYhO-g620Mcs2GKES0kE7Sg3_5BH-OY-vK7QjW0VoI1vFBsSxUHOSfwZpXC0qa1ocRs9JutflP0m1f95rk0fX2LHudLaP-2vPsuAN8CuTz1C0gfs_8T-wKWoY-s</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2851486253</pqid></control><display><type>article</type><title>Differential Expression of MicroRNAs and Predicted Drug Target in Amyotrophic Lateral Sclerosis</title><source>SpringerLink Journals - AutoHoldings</source><creator>Patel, Riya Ben ; Bajpai, Akhilesh Kumar ; Thirumurugan, Kavitha</creator><creatorcontrib>Patel, Riya Ben ; Bajpai, Akhilesh Kumar ; Thirumurugan, Kavitha</creatorcontrib><description>ALS (Amyotrophic Lateral Sclerosis) is a rare type of neurodegenerative disease. It shows progressive degradation of motor neurons in the brain and spinal cord. At present, there is no treatment available that can completely cure ALS. The available treatments can only increase a patient’s life span by a few months. Recently, microRNAs (miRNAs), a sub-class of small non-coding RNAs have been shown to play an essential role in the diagnosis, prognosis, and therapy of ALS. Our study focuses on analyzing differential miRNA profiles and predicting drug targets in ALS using bioinformatics and computational approach. The study identifies eight highly differentially expressed miRNAs in ALS patients, four of which are novel. We identified 42 hub genes for these eight highly expressed miRNAs with Amyloid Precursor Protein ( APP) as a candidate gene among them for highly expressed down-regulated miRNA, hsa-miR-455-3p using protein–protein interaction network and Cytoscape analysis. A novel association has been found between hsa-miR-455-3p/APP/serotonergic pathway using KEGG pathway analysis. Also, molecular docking studies have revealed curcumin as a potential drug target that may be used for the treatment of ALS. Thus, the present study has identified four novel miRNA biomarkers: hsa-miR-3613-5p, hsa-miR-24, hsa-miR-3064-5p, and hsa-miR-4455. There is a formation of a novel axis, hsa-miR-455-3p/APP/serotonergic pathway, and curcumin is predicted as a potential drug target for ALS.</description><identifier>ISSN: 0895-8696</identifier><identifier>EISSN: 1559-1166</identifier><identifier>DOI: 10.1007/s12031-023-02124-z</identifier><identifier>PMID: 37249795</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Alzheimer's disease ; Amyloid precursor protein ; Amyotrophic lateral sclerosis ; Bioinformatics ; Biomarkers ; Biomedical and Life Sciences ; Biomedicine ; Cell Biology ; Computational neuroscience ; Curcumin ; Life span ; MicroRNAs ; miRNA ; Molecular docking ; Motor neurons ; Neurochemistry ; Neurodegenerative diseases ; Neurology ; Neurosciences ; Non-coding RNA ; Proteins ; Proteomics ; Spinal cord ; Therapeutic targets</subject><ispartof>Journal of molecular neuroscience, 2023-06, Vol.73 (6), p.375-390</ispartof><rights>The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2023. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c326t-8cf45fa0c326f48b16bed4ea6dce7e70389919f2e11773e41867a303c79879203</cites><orcidid>0000-0002-4673-4099 ; 0000-0001-9023-1790</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s12031-023-02124-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s12031-023-02124-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,778,782,27911,27912,41475,42544,51306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37249795$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Patel, Riya Ben</creatorcontrib><creatorcontrib>Bajpai, Akhilesh Kumar</creatorcontrib><creatorcontrib>Thirumurugan, Kavitha</creatorcontrib><title>Differential Expression of MicroRNAs and Predicted Drug Target in Amyotrophic Lateral Sclerosis</title><title>Journal of molecular neuroscience</title><addtitle>J Mol Neurosci</addtitle><addtitle>J Mol Neurosci</addtitle><description>ALS (Amyotrophic Lateral Sclerosis) is a rare type of neurodegenerative disease. It shows progressive degradation of motor neurons in the brain and spinal cord. At present, there is no treatment available that can completely cure ALS. The available treatments can only increase a patient’s life span by a few months. Recently, microRNAs (miRNAs), a sub-class of small non-coding RNAs have been shown to play an essential role in the diagnosis, prognosis, and therapy of ALS. Our study focuses on analyzing differential miRNA profiles and predicting drug targets in ALS using bioinformatics and computational approach. The study identifies eight highly differentially expressed miRNAs in ALS patients, four of which are novel. We identified 42 hub genes for these eight highly expressed miRNAs with Amyloid Precursor Protein ( APP) as a candidate gene among them for highly expressed down-regulated miRNA, hsa-miR-455-3p using protein–protein interaction network and Cytoscape analysis. A novel association has been found between hsa-miR-455-3p/APP/serotonergic pathway using KEGG pathway analysis. Also, molecular docking studies have revealed curcumin as a potential drug target that may be used for the treatment of ALS. Thus, the present study has identified four novel miRNA biomarkers: hsa-miR-3613-5p, hsa-miR-24, hsa-miR-3064-5p, and hsa-miR-4455. There is a formation of a novel axis, hsa-miR-455-3p/APP/serotonergic pathway, and curcumin is predicted as a potential drug target for ALS.</description><subject>Alzheimer's disease</subject><subject>Amyloid precursor protein</subject><subject>Amyotrophic lateral sclerosis</subject><subject>Bioinformatics</subject><subject>Biomarkers</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Cell Biology</subject><subject>Computational neuroscience</subject><subject>Curcumin</subject><subject>Life span</subject><subject>MicroRNAs</subject><subject>miRNA</subject><subject>Molecular docking</subject><subject>Motor neurons</subject><subject>Neurochemistry</subject><subject>Neurodegenerative diseases</subject><subject>Neurology</subject><subject>Neurosciences</subject><subject>Non-coding RNA</subject><subject>Proteins</subject><subject>Proteomics</subject><subject>Spinal cord</subject><subject>Therapeutic targets</subject><issn>0895-8696</issn><issn>1559-1166</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kEtPGzEURq2qCMLjD3RRWeqmmwE_ZvxYRkABKUBVYG05nuvUaDJO7RmJ8OtxCBSpiy6sK8vnftf3IPSFkmNKiDzJlBFOK8J4OZTV1fMnNKFNoytKhfiMJkTpplJCiz20n_MjKVRN1S7a45LVWupmgsxZ8B4S9EOwHT5_WiXIOcQeR4-vg0vx1800Y9u3-GeCNrgBWnyWxgW-t2kBAw49ni7XcUhx9Ts4PLMDpBJ05zpIMYd8iHa87TIcvdUD9PDj_P70sprdXlydTmeV40wMlXK-brwlm5uv1ZyKObQ1WNE6kCAJV1pT7RlQKiWHsoWQlhPupFZSFw0H6Ps2d5XinxHyYJYhO-g620Mcs2GKES0kE7Sg3_5BH-OY-vK7QjW0VoI1vFBsSxUHOSfwZpXC0qa1ocRs9JutflP0m1f95rk0fX2LHudLaP-2vPsuAN8CuTz1C0gfs_8T-wKWoY-s</recordid><startdate>20230601</startdate><enddate>20230601</enddate><creator>Patel, Riya Ben</creator><creator>Bajpai, Akhilesh Kumar</creator><creator>Thirumurugan, Kavitha</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7QR</scope><scope>7T7</scope><scope>7TK</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>88G</scope><scope>8AO</scope><scope>8FD</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2M</scope><scope>M7N</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PSYQQ</scope><scope>Q9U</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-4673-4099</orcidid><orcidid>https://orcid.org/0000-0001-9023-1790</orcidid></search><sort><creationdate>20230601</creationdate><title>Differential Expression of MicroRNAs and Predicted Drug Target in Amyotrophic Lateral Sclerosis</title><author>Patel, Riya Ben ; Bajpai, Akhilesh Kumar ; Thirumurugan, Kavitha</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c326t-8cf45fa0c326f48b16bed4ea6dce7e70389919f2e11773e41867a303c79879203</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Alzheimer's disease</topic><topic>Amyloid precursor protein</topic><topic>Amyotrophic lateral sclerosis</topic><topic>Bioinformatics</topic><topic>Biomarkers</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Cell Biology</topic><topic>Computational neuroscience</topic><topic>Curcumin</topic><topic>Life span</topic><topic>MicroRNAs</topic><topic>miRNA</topic><topic>Molecular docking</topic><topic>Motor neurons</topic><topic>Neurochemistry</topic><topic>Neurodegenerative diseases</topic><topic>Neurology</topic><topic>Neurosciences</topic><topic>Non-coding RNA</topic><topic>Proteins</topic><topic>Proteomics</topic><topic>Spinal cord</topic><topic>Therapeutic targets</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Patel, Riya Ben</creatorcontrib><creatorcontrib>Bajpai, Akhilesh Kumar</creatorcontrib><creatorcontrib>Thirumurugan, Kavitha</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Chemoreception Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health &amp; Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Psychology Database (Alumni)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Psychology Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest One Psychology</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of molecular neuroscience</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Patel, Riya Ben</au><au>Bajpai, Akhilesh Kumar</au><au>Thirumurugan, Kavitha</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Differential Expression of MicroRNAs and Predicted Drug Target in Amyotrophic Lateral Sclerosis</atitle><jtitle>Journal of molecular neuroscience</jtitle><stitle>J Mol Neurosci</stitle><addtitle>J Mol Neurosci</addtitle><date>2023-06-01</date><risdate>2023</risdate><volume>73</volume><issue>6</issue><spage>375</spage><epage>390</epage><pages>375-390</pages><issn>0895-8696</issn><eissn>1559-1166</eissn><abstract>ALS (Amyotrophic Lateral Sclerosis) is a rare type of neurodegenerative disease. It shows progressive degradation of motor neurons in the brain and spinal cord. At present, there is no treatment available that can completely cure ALS. The available treatments can only increase a patient’s life span by a few months. Recently, microRNAs (miRNAs), a sub-class of small non-coding RNAs have been shown to play an essential role in the diagnosis, prognosis, and therapy of ALS. Our study focuses on analyzing differential miRNA profiles and predicting drug targets in ALS using bioinformatics and computational approach. The study identifies eight highly differentially expressed miRNAs in ALS patients, four of which are novel. We identified 42 hub genes for these eight highly expressed miRNAs with Amyloid Precursor Protein ( APP) as a candidate gene among them for highly expressed down-regulated miRNA, hsa-miR-455-3p using protein–protein interaction network and Cytoscape analysis. A novel association has been found between hsa-miR-455-3p/APP/serotonergic pathway using KEGG pathway analysis. Also, molecular docking studies have revealed curcumin as a potential drug target that may be used for the treatment of ALS. Thus, the present study has identified four novel miRNA biomarkers: hsa-miR-3613-5p, hsa-miR-24, hsa-miR-3064-5p, and hsa-miR-4455. There is a formation of a novel axis, hsa-miR-455-3p/APP/serotonergic pathway, and curcumin is predicted as a potential drug target for ALS.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>37249795</pmid><doi>10.1007/s12031-023-02124-z</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0002-4673-4099</orcidid><orcidid>https://orcid.org/0000-0001-9023-1790</orcidid></addata></record>
fulltext fulltext
identifier ISSN: 0895-8696
ispartof Journal of molecular neuroscience, 2023-06, Vol.73 (6), p.375-390
issn 0895-8696
1559-1166
language eng
recordid cdi_proquest_miscellaneous_2820967261
source SpringerLink Journals - AutoHoldings
subjects Alzheimer's disease
Amyloid precursor protein
Amyotrophic lateral sclerosis
Bioinformatics
Biomarkers
Biomedical and Life Sciences
Biomedicine
Cell Biology
Computational neuroscience
Curcumin
Life span
MicroRNAs
miRNA
Molecular docking
Motor neurons
Neurochemistry
Neurodegenerative diseases
Neurology
Neurosciences
Non-coding RNA
Proteins
Proteomics
Spinal cord
Therapeutic targets
title Differential Expression of MicroRNAs and Predicted Drug Target in Amyotrophic Lateral Sclerosis
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-15T10%3A59%3A06IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Differential%20Expression%20of%20MicroRNAs%20and%20Predicted%20Drug%20Target%20in%20Amyotrophic%20Lateral%20Sclerosis&rft.jtitle=Journal%20of%20molecular%20neuroscience&rft.au=Patel,%20Riya%20Ben&rft.date=2023-06-01&rft.volume=73&rft.issue=6&rft.spage=375&rft.epage=390&rft.pages=375-390&rft.issn=0895-8696&rft.eissn=1559-1166&rft_id=info:doi/10.1007/s12031-023-02124-z&rft_dat=%3Cproquest_cross%3E2851486253%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2851486253&rft_id=info:pmid/37249795&rfr_iscdi=true