Operational Ontology for Oncology (O3): A Professional Society-Based, Multistakeholder, Consensus-Driven Informatics Standard Supporting Clinical and Research Use of Real-World Data From Patients Treated for Cancer
The ongoing lack of data standardization severely undermines the potential for automated learning from the vast amount of information routinely archived in electronic health records (EHRs), radiation oncology information systems, treatment planning systems, and other cancer care and outcomes databas...
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Veröffentlicht in: | International journal of radiation oncology, biology, physics biology, physics, 2023-11, Vol.117 (3), p.533-550 |
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creator | Mayo, Charles S Feng, Mary U Brock, Kristy K Kudner, Randi Balter, Peter Buchsbaum, Jeffrey C Caissie, Amanda Covington, Elizabeth Daugherty, Emily C Dekker, Andre L Fuller, Clifton D Hallstrom, Anneka L Hong, David S Hong, Julian C Kamran, Sophia C Katsoulakis, Eva Kildea, John Krauze, Andra V Kruse, Jon J McNutt, Tod Mierzwa, Michelle Moreno, Amy Palta, Jatinder R Popple, Richard Purdie, Thomas G Richardson, Susan Sharp, Gregory C Satomi, Shiraishi Tarbox, Lawrence R Venkatesan, Aradhana M Witztum, Alon Woods, Kelly E Yao, Yuan Farahani, Keyvan Aneja, Sanjay Gabriel, Peter E Hadjiiski, Lubomire Ruan, Dan Siewerdsen, Jeffrey H Bratt, Steven Casagni, Michelle Chen, Su Christodouleas, John C DiDonato, Anthony Hayman, James Kapoor, Rishhab Kravitz, Saul Sebastian, Sharon Von Siebenthal, Martin Bosch, Walter Hurkmans, Coen Yom, Sue S Xiao, Ying |
description | The ongoing lack of data standardization severely undermines the potential for automated learning from the vast amount of information routinely archived in electronic health records (EHRs), radiation oncology information systems, treatment planning systems, and other cancer care and outcomes databases. We sought to create a standardized ontology for clinical data, social determinants of health, and other radiation oncology concepts and interrelationships.
The American Association of Physicists in Medicine's Big Data Science Committee was initiated in July 2019 to explore common ground from the stakeholders' collective experience of issues that typically compromise the formation of large inter- and intra-institutional databases from EHRs. The Big Data Science Committee adopted an iterative, cyclical approach to engaging stakeholders beyond its membership to optimize the integration of diverse perspectives from the community.
We developed the Operational Ontology for Oncology (O3), which identified 42 key elements, 359 attributes, 144 value sets, and 155 relationships ranked in relative importance of clinical significance, likelihood of availability in EHRs, and the ability to modify routine clinical processes to permit aggregation. Recommendations are provided for best use and development of the O3 to 4 constituencies: device manufacturers, centers of clinical care, researchers, and professional societies.
O3 is designed to extend and interoperate with existing global infrastructure and data science standards. The implementation of these recommendations will lower the barriers for aggregation of information that could be used to create large, representative, findable, accessible, interoperable, and reusable data sets to support the scientific objectives of grant programs. The construction of comprehensive "real-world" data sets and application of advanced analytical techniques, including artificial intelligence, holds the potential to revolutionize patient management and improve outcomes by leveraging increased access to information derived from larger, more representative data sets. |
doi_str_mv | 10.1016/j.ijrobp.2023.05.033 |
format | Article |
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The American Association of Physicists in Medicine's Big Data Science Committee was initiated in July 2019 to explore common ground from the stakeholders' collective experience of issues that typically compromise the formation of large inter- and intra-institutional databases from EHRs. The Big Data Science Committee adopted an iterative, cyclical approach to engaging stakeholders beyond its membership to optimize the integration of diverse perspectives from the community.
We developed the Operational Ontology for Oncology (O3), which identified 42 key elements, 359 attributes, 144 value sets, and 155 relationships ranked in relative importance of clinical significance, likelihood of availability in EHRs, and the ability to modify routine clinical processes to permit aggregation. Recommendations are provided for best use and development of the O3 to 4 constituencies: device manufacturers, centers of clinical care, researchers, and professional societies.
O3 is designed to extend and interoperate with existing global infrastructure and data science standards. The implementation of these recommendations will lower the barriers for aggregation of information that could be used to create large, representative, findable, accessible, interoperable, and reusable data sets to support the scientific objectives of grant programs. The construction of comprehensive "real-world" data sets and application of advanced analytical techniques, including artificial intelligence, holds the potential to revolutionize patient management and improve outcomes by leveraging increased access to information derived from larger, more representative data sets.</description><identifier>ISSN: 0360-3016</identifier><identifier>ISSN: 1879-355X</identifier><identifier>EISSN: 1879-355X</identifier><identifier>DOI: 10.1016/j.ijrobp.2023.05.033</identifier><identifier>PMID: 37244628</identifier><language>eng</language><publisher>United States</publisher><subject>Artificial Intelligence ; Consensus ; Humans ; Informatics ; Neoplasms - radiotherapy ; Radiation Oncology</subject><ispartof>International journal of radiation oncology, biology, physics, 2023-11, Vol.117 (3), p.533-550</ispartof><rights>Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c307t-d2791ccd6feea5e6a2d72048fe2a9c38215c7fcf873c5696e18188b2f915dff03</citedby><cites>FETCH-LOGICAL-c307t-d2791ccd6feea5e6a2d72048fe2a9c38215c7fcf873c5696e18188b2f915dff03</cites><orcidid>0000-0003-2030-9892</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37244628$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Mayo, Charles S</creatorcontrib><creatorcontrib>Feng, Mary U</creatorcontrib><creatorcontrib>Brock, Kristy K</creatorcontrib><creatorcontrib>Kudner, Randi</creatorcontrib><creatorcontrib>Balter, Peter</creatorcontrib><creatorcontrib>Buchsbaum, Jeffrey C</creatorcontrib><creatorcontrib>Caissie, Amanda</creatorcontrib><creatorcontrib>Covington, Elizabeth</creatorcontrib><creatorcontrib>Daugherty, Emily C</creatorcontrib><creatorcontrib>Dekker, Andre L</creatorcontrib><creatorcontrib>Fuller, Clifton D</creatorcontrib><creatorcontrib>Hallstrom, Anneka L</creatorcontrib><creatorcontrib>Hong, David S</creatorcontrib><creatorcontrib>Hong, Julian C</creatorcontrib><creatorcontrib>Kamran, Sophia C</creatorcontrib><creatorcontrib>Katsoulakis, Eva</creatorcontrib><creatorcontrib>Kildea, John</creatorcontrib><creatorcontrib>Krauze, Andra V</creatorcontrib><creatorcontrib>Kruse, Jon J</creatorcontrib><creatorcontrib>McNutt, Tod</creatorcontrib><creatorcontrib>Mierzwa, Michelle</creatorcontrib><creatorcontrib>Moreno, Amy</creatorcontrib><creatorcontrib>Palta, Jatinder R</creatorcontrib><creatorcontrib>Popple, Richard</creatorcontrib><creatorcontrib>Purdie, Thomas G</creatorcontrib><creatorcontrib>Richardson, Susan</creatorcontrib><creatorcontrib>Sharp, Gregory C</creatorcontrib><creatorcontrib>Satomi, Shiraishi</creatorcontrib><creatorcontrib>Tarbox, Lawrence R</creatorcontrib><creatorcontrib>Venkatesan, Aradhana M</creatorcontrib><creatorcontrib>Witztum, Alon</creatorcontrib><creatorcontrib>Woods, Kelly E</creatorcontrib><creatorcontrib>Yao, Yuan</creatorcontrib><creatorcontrib>Farahani, Keyvan</creatorcontrib><creatorcontrib>Aneja, Sanjay</creatorcontrib><creatorcontrib>Gabriel, Peter E</creatorcontrib><creatorcontrib>Hadjiiski, Lubomire</creatorcontrib><creatorcontrib>Ruan, Dan</creatorcontrib><creatorcontrib>Siewerdsen, Jeffrey H</creatorcontrib><creatorcontrib>Bratt, Steven</creatorcontrib><creatorcontrib>Casagni, Michelle</creatorcontrib><creatorcontrib>Chen, Su</creatorcontrib><creatorcontrib>Christodouleas, John C</creatorcontrib><creatorcontrib>DiDonato, Anthony</creatorcontrib><creatorcontrib>Hayman, James</creatorcontrib><creatorcontrib>Kapoor, Rishhab</creatorcontrib><creatorcontrib>Kravitz, Saul</creatorcontrib><creatorcontrib>Sebastian, Sharon</creatorcontrib><creatorcontrib>Von Siebenthal, Martin</creatorcontrib><creatorcontrib>Bosch, Walter</creatorcontrib><creatorcontrib>Hurkmans, Coen</creatorcontrib><creatorcontrib>Yom, Sue S</creatorcontrib><creatorcontrib>Xiao, Ying</creatorcontrib><title>Operational Ontology for Oncology (O3): A Professional Society-Based, Multistakeholder, Consensus-Driven Informatics Standard Supporting Clinical and Research Use of Real-World Data From Patients Treated for Cancer</title><title>International journal of radiation oncology, biology, physics</title><addtitle>Int J Radiat Oncol Biol Phys</addtitle><description>The ongoing lack of data standardization severely undermines the potential for automated learning from the vast amount of information routinely archived in electronic health records (EHRs), radiation oncology information systems, treatment planning systems, and other cancer care and outcomes databases. We sought to create a standardized ontology for clinical data, social determinants of health, and other radiation oncology concepts and interrelationships.
The American Association of Physicists in Medicine's Big Data Science Committee was initiated in July 2019 to explore common ground from the stakeholders' collective experience of issues that typically compromise the formation of large inter- and intra-institutional databases from EHRs. The Big Data Science Committee adopted an iterative, cyclical approach to engaging stakeholders beyond its membership to optimize the integration of diverse perspectives from the community.
We developed the Operational Ontology for Oncology (O3), which identified 42 key elements, 359 attributes, 144 value sets, and 155 relationships ranked in relative importance of clinical significance, likelihood of availability in EHRs, and the ability to modify routine clinical processes to permit aggregation. Recommendations are provided for best use and development of the O3 to 4 constituencies: device manufacturers, centers of clinical care, researchers, and professional societies.
O3 is designed to extend and interoperate with existing global infrastructure and data science standards. The implementation of these recommendations will lower the barriers for aggregation of information that could be used to create large, representative, findable, accessible, interoperable, and reusable data sets to support the scientific objectives of grant programs. The construction of comprehensive "real-world" data sets and application of advanced analytical techniques, including artificial intelligence, holds the potential to revolutionize patient management and improve outcomes by leveraging increased access to information derived from larger, more representative data sets.</description><subject>Artificial Intelligence</subject><subject>Consensus</subject><subject>Humans</subject><subject>Informatics</subject><subject>Neoplasms - radiotherapy</subject><subject>Radiation 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outcomes databases. We sought to create a standardized ontology for clinical data, social determinants of health, and other radiation oncology concepts and interrelationships.
The American Association of Physicists in Medicine's Big Data Science Committee was initiated in July 2019 to explore common ground from the stakeholders' collective experience of issues that typically compromise the formation of large inter- and intra-institutional databases from EHRs. The Big Data Science Committee adopted an iterative, cyclical approach to engaging stakeholders beyond its membership to optimize the integration of diverse perspectives from the community.
We developed the Operational Ontology for Oncology (O3), which identified 42 key elements, 359 attributes, 144 value sets, and 155 relationships ranked in relative importance of clinical significance, likelihood of availability in EHRs, and the ability to modify routine clinical processes to permit aggregation. Recommendations are provided for best use and development of the O3 to 4 constituencies: device manufacturers, centers of clinical care, researchers, and professional societies.
O3 is designed to extend and interoperate with existing global infrastructure and data science standards. The implementation of these recommendations will lower the barriers for aggregation of information that could be used to create large, representative, findable, accessible, interoperable, and reusable data sets to support the scientific objectives of grant programs. The construction of comprehensive "real-world" data sets and application of advanced analytical techniques, including artificial intelligence, holds the potential to revolutionize patient management and improve outcomes by leveraging increased access to information derived from larger, more representative data sets.</abstract><cop>United States</cop><pmid>37244628</pmid><doi>10.1016/j.ijrobp.2023.05.033</doi><tpages>18</tpages><orcidid>https://orcid.org/0000-0003-2030-9892</orcidid></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0360-3016 |
ispartof | International journal of radiation oncology, biology, physics, 2023-11, Vol.117 (3), p.533-550 |
issn | 0360-3016 1879-355X 1879-355X |
language | eng |
recordid | cdi_proquest_miscellaneous_2820029735 |
source | MEDLINE; Elsevier ScienceDirect Journals |
subjects | Artificial Intelligence Consensus Humans Informatics Neoplasms - radiotherapy Radiation Oncology |
title | Operational Ontology for Oncology (O3): A Professional Society-Based, Multistakeholder, Consensus-Driven Informatics Standard Supporting Clinical and Research Use of Real-World Data From Patients Treated for Cancer |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-02T06%3A14%3A55IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Operational%20Ontology%20for%20Oncology%20(O3):%20A%20Professional%20Society-Based,%20Multistakeholder,%20Consensus-Driven%20Informatics%20Standard%20Supporting%20Clinical%20and%20Research%20Use%20of%20Real-World%20Data%20From%20Patients%20Treated%20for%20Cancer&rft.jtitle=International%20journal%20of%20radiation%20oncology,%20biology,%20physics&rft.au=Mayo,%20Charles%20S&rft.date=2023-11-01&rft.volume=117&rft.issue=3&rft.spage=533&rft.epage=550&rft.pages=533-550&rft.issn=0360-3016&rft.eissn=1879-355X&rft_id=info:doi/10.1016/j.ijrobp.2023.05.033&rft_dat=%3Cproquest_cross%3E2820029735%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2820029735&rft_id=info:pmid/37244628&rfr_iscdi=true |