Flavobacterium lacisediminis sp. nov., a bacterium isolated from lake sediment
A taxonomic identification using polyphasic approach was performed on strain TH16-21 , which was isolated from the interfacial sediment of Taihu Lake, PR China. Strain TH16-21 was Gram-stain-negative, aerobic, rod-shaped and catalase-positive. Phylogenetic analysis based on the 16S rRNA gene and gen...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2023-05, Vol.73 (5) |
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| creator | Zhang, Bo-Yuan Yuan, Ye Zhou, Jia Wang, Xi-Feng Li, Hai-Feng Qu, Jian-Hang |
| description | A taxonomic identification using polyphasic approach was performed on strain TH16-21
, which was isolated from the interfacial sediment of Taihu Lake, PR China. Strain TH16-21
was Gram-stain-negative, aerobic, rod-shaped and catalase-positive. Phylogenetic analysis based on the 16S rRNA gene and genomic sequences indicated that strain TH16-21
was classified within the genus of
. The 16S rRNA gene sequence of strain TH16-21
showed the highest similarity to
NJ-26
(98.9 %). The average nucleotide identity and digital DNA-DNA hybridization values between strain TH16-21
and
NJ-26
were 91.2 and 45.9 %, respectively. The respiratory quinone was menaquinone 6. The major cellular fatty acids (>10 %) comprised iso-C
, iso-C
, iso-C
G and iso-C
3-OH. The genomic DNA G+C content was 32.2 mol%. Phosphatidylethanolamine, six amino lipids and three phospholipids were the main polar lipids. Based on the phenotypic features and phylogenetic position, a novel species with the name
sp. nov. is proposed. The type strain is TH16-21
(=MCCC 1K04592
=KACC 22896
). |
| doi_str_mv | 10.1099/ijsem.0.005914 |
| format | Article |
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, which was isolated from the interfacial sediment of Taihu Lake, PR China. Strain TH16-21
was Gram-stain-negative, aerobic, rod-shaped and catalase-positive. Phylogenetic analysis based on the 16S rRNA gene and genomic sequences indicated that strain TH16-21
was classified within the genus of
. The 16S rRNA gene sequence of strain TH16-21
showed the highest similarity to
NJ-26
(98.9 %). The average nucleotide identity and digital DNA-DNA hybridization values between strain TH16-21
and
NJ-26
were 91.2 and 45.9 %, respectively. The respiratory quinone was menaquinone 6. The major cellular fatty acids (>10 %) comprised iso-C
, iso-C
, iso-C
G and iso-C
3-OH. The genomic DNA G+C content was 32.2 mol%. Phosphatidylethanolamine, six amino lipids and three phospholipids were the main polar lipids. Based on the phenotypic features and phylogenetic position, a novel species with the name
sp. nov. is proposed. The type strain is TH16-21
(=MCCC 1K04592
=KACC 22896
).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.005914</identifier><identifier>PMID: 37233727</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Typing Techniques ; Base Composition ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Flavobacterium ; Lakes - microbiology ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Vitamin K 2</subject><ispartof>International journal of systematic and evolutionary microbiology, 2023-05, Vol.73 (5)</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c295t-ecc3bb9ad553a711a42b4241958dd7fcca40cca27d5ac3d5f2e476f13cebb6503</citedby><cites>FETCH-LOGICAL-c295t-ecc3bb9ad553a711a42b4241958dd7fcca40cca27d5ac3d5f2e476f13cebb6503</cites><orcidid>0000-0002-0163-8212</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37233727$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Bo-Yuan</creatorcontrib><creatorcontrib>Yuan, Ye</creatorcontrib><creatorcontrib>Zhou, Jia</creatorcontrib><creatorcontrib>Wang, Xi-Feng</creatorcontrib><creatorcontrib>Li, Hai-Feng</creatorcontrib><creatorcontrib>Qu, Jian-Hang</creatorcontrib><title>Flavobacterium lacisediminis sp. nov., a bacterium isolated from lake sediment</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A taxonomic identification using polyphasic approach was performed on strain TH16-21
, which was isolated from the interfacial sediment of Taihu Lake, PR China. Strain TH16-21
was Gram-stain-negative, aerobic, rod-shaped and catalase-positive. Phylogenetic analysis based on the 16S rRNA gene and genomic sequences indicated that strain TH16-21
was classified within the genus of
. The 16S rRNA gene sequence of strain TH16-21
showed the highest similarity to
NJ-26
(98.9 %). The average nucleotide identity and digital DNA-DNA hybridization values between strain TH16-21
and
NJ-26
were 91.2 and 45.9 %, respectively. The respiratory quinone was menaquinone 6. The major cellular fatty acids (>10 %) comprised iso-C
, iso-C
, iso-C
G and iso-C
3-OH. The genomic DNA G+C content was 32.2 mol%. Phosphatidylethanolamine, six amino lipids and three phospholipids were the main polar lipids. Based on the phenotypic features and phylogenetic position, a novel species with the name
sp. nov. is proposed. The type strain is TH16-21
(=MCCC 1K04592
=KACC 22896
).</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Flavobacterium</subject><subject>Lakes - microbiology</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Vitamin K 2</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkEtLw0AUhQdRbK1uXcosXZg4z6RZSrEqFN3oepjHDUxNMnUmKfjvTVuti_vgcs6B-yF0TUlOSVXd-3WCNic5IbKi4gRNqSiKTBIuTo87KyboIqU1IeOBkHM04SXjY5VT9Lps9DYYbXuIfmhxo61P4HzrO59w2uS4C9v8Dmv8r_EpNLoHh-sYdo5PwHsLdP0lOqt1k-Dqd87Qx_LxffGcrd6eXhYPq8yySvYZWMuNqbSTkuuSUi2YEUzQSs6dK2trtSBjY6WT2nInawaiLGrKLRhTjN_N0O0hdxPD1wCpV61PFppGdxCGpNickfFvXsxHaX6Q2hhSilCrTfStjt-KErVjqPYMFVEHhqPh5jd7MC24o_wPGv8B279ulw</recordid><startdate>202305</startdate><enddate>202305</enddate><creator>Zhang, Bo-Yuan</creator><creator>Yuan, Ye</creator><creator>Zhou, Jia</creator><creator>Wang, Xi-Feng</creator><creator>Li, Hai-Feng</creator><creator>Qu, Jian-Hang</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-0163-8212</orcidid></search><sort><creationdate>202305</creationdate><title>Flavobacterium lacisediminis sp. nov., a bacterium isolated from lake sediment</title><author>Zhang, Bo-Yuan ; Yuan, Ye ; Zhou, Jia ; Wang, Xi-Feng ; Li, Hai-Feng ; Qu, Jian-Hang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c295t-ecc3bb9ad553a711a42b4241958dd7fcca40cca27d5ac3d5f2e476f13cebb6503</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Flavobacterium</topic><topic>Lakes - microbiology</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Vitamin K 2</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Bo-Yuan</creatorcontrib><creatorcontrib>Yuan, Ye</creatorcontrib><creatorcontrib>Zhou, Jia</creatorcontrib><creatorcontrib>Wang, Xi-Feng</creatorcontrib><creatorcontrib>Li, Hai-Feng</creatorcontrib><creatorcontrib>Qu, Jian-Hang</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Bo-Yuan</au><au>Yuan, Ye</au><au>Zhou, Jia</au><au>Wang, Xi-Feng</au><au>Li, Hai-Feng</au><au>Qu, Jian-Hang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Flavobacterium lacisediminis sp. nov., a bacterium isolated from lake sediment</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2023-05</date><risdate>2023</risdate><volume>73</volume><issue>5</issue><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A taxonomic identification using polyphasic approach was performed on strain TH16-21
, which was isolated from the interfacial sediment of Taihu Lake, PR China. Strain TH16-21
was Gram-stain-negative, aerobic, rod-shaped and catalase-positive. Phylogenetic analysis based on the 16S rRNA gene and genomic sequences indicated that strain TH16-21
was classified within the genus of
. The 16S rRNA gene sequence of strain TH16-21
showed the highest similarity to
NJ-26
(98.9 %). The average nucleotide identity and digital DNA-DNA hybridization values between strain TH16-21
and
NJ-26
were 91.2 and 45.9 %, respectively. The respiratory quinone was menaquinone 6. The major cellular fatty acids (>10 %) comprised iso-C
, iso-C
, iso-C
G and iso-C
3-OH. The genomic DNA G+C content was 32.2 mol%. Phosphatidylethanolamine, six amino lipids and three phospholipids were the main polar lipids. Based on the phenotypic features and phylogenetic position, a novel species with the name
sp. nov. is proposed. The type strain is TH16-21
(=MCCC 1K04592
=KACC 22896
).</abstract><cop>England</cop><pmid>37233727</pmid><doi>10.1099/ijsem.0.005914</doi><orcidid>https://orcid.org/0000-0002-0163-8212</orcidid></addata></record> |
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| ispartof | International journal of systematic and evolutionary microbiology, 2023-05, Vol.73 (5) |
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| language | eng |
| recordid | cdi_proquest_miscellaneous_2820026368 |
| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Base Composition DNA, Bacterial - genetics Fatty Acids - chemistry Flavobacterium Lakes - microbiology Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Vitamin K 2 |
| title | Flavobacterium lacisediminis sp. nov., a bacterium isolated from lake sediment |
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