Design and Optimization of Novel Benzimidazole- and Imidazo[4,5‑b]pyridine-Based ATM Kinase Inhibitors with Subnanomolar Activities

The ATM kinase is a promising target in cancer treatment as an important regulator of the cellular response to DNA double-strand breaks. In this work, we present a new class of specific benzimidazole-based ATM inhibitors with picomolar potency against the isolated enzyme and favorable selectivity wi...

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Veröffentlicht in:Journal of medicinal chemistry 2023-06, Vol.66 (11), p.7304-7330
Hauptverfasser: Dimitrov, Teodor, Moschopoulou, Athina Anastasia, Seidel, Lennart, Kronenberger, Thales, Kudolo, Mark, Poso, Antti, Geibel, Christian, Wölffing, Pascal, Dauch, Daniel, Zender, Lars, Schollmeyer, Dieter, Bajorath, Jürgen, Forster, Michael, Laufer, Stefan
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container_end_page 7330
container_issue 11
container_start_page 7304
container_title Journal of medicinal chemistry
container_volume 66
creator Dimitrov, Teodor
Moschopoulou, Athina Anastasia
Seidel, Lennart
Kronenberger, Thales
Kudolo, Mark
Poso, Antti
Geibel, Christian
Wölffing, Pascal
Dauch, Daniel
Zender, Lars
Schollmeyer, Dieter
Bajorath, Jürgen
Forster, Michael
Laufer, Stefan
description The ATM kinase is a promising target in cancer treatment as an important regulator of the cellular response to DNA double-strand breaks. In this work, we present a new class of specific benzimidazole-based ATM inhibitors with picomolar potency against the isolated enzyme and favorable selectivity within relative PIKK and PI3K kinases. We could identify two promising inhibitor subgroups with significantly different physicochemical properties, which we developed simultaneously. These efforts lead to numerous highly active inhibitors with picomolar enzymatic activities. Furthermore, initial low cellular activities on A549 cells could be increased significantly in numerous examples resulting in cellular IC50 values in the subnanomolar range. Further characterization of the highly potent inhibitors 90 und 93 revealed promising pharmacokinetic properties and strong activities in organoids in combination with etoposide. Additionally, 93 showed no off-target activities within a kinome-representative mini kinase panel, with favorable selectivities within the PIKK- and PI3K-families.
doi_str_mv 10.1021/acs.jmedchem.2c02104
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source MEDLINE; American Chemical Society Journals
subjects Ataxia Telangiectasia Mutated Proteins
Benzimidazoles - pharmacology
Etoposide
Humans
Phosphatidylinositol 3-Kinases - metabolism
Phosphoinositide-3 Kinase Inhibitors - pharmacology
Protein Kinase Inhibitors - chemistry
Protein Kinase Inhibitors - pharmacology
Pyridines - pharmacology
title Design and Optimization of Novel Benzimidazole- and Imidazo[4,5‑b]pyridine-Based ATM Kinase Inhibitors with Subnanomolar Activities
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