Enhanced rice plant (BRRI-28) growth at lower doses of urea caused by diazinon mineralizing endophytic bacterial consortia and explorations of relevant regulatory genes in a Klebsiella sp. strain HSTU-F2D4R
Endophytic biostimulant with pesticide bioremediation activities may reduce agrochemicals application in rice cultivation. The present study evaluates diazinon-degrading endophytic bacteria, isolated from rice plants grown in the fields with pesticide amalgamation, leading to increased productivity...
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| Veröffentlicht in: | Archives of microbiology 2023-06, Vol.205 (6), p.231-231, Article 231 |
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| creator | Haque, Md. Azizul Simo Prodhan, Md. Yeasin Ghosh, Sibdas Hossain, Md. Shohorab Rahman, Aminur Sarker, Uttam Kumar Haque, Md. Atiqul |
| description | Endophytic biostimulant with pesticide bioremediation activities may reduce agrochemicals application in rice cultivation. The present study evaluates diazinon-degrading endophytic bacteria, isolated from rice plants grown in the fields with pesticide amalgamation, leading to increased productivity in high-yielding rice plants. These endophytes showed capabilities of decomposing diazinon, confirmed by FT-IR spectra analysis. Growth promoting activities of these endophytes can be attributed to their abilities to produce an increased level of IAA content and to demonstrate high level ACC-deaminase activities. Furthermore, these endophytes demonstrated enhanced level of extracellular cellulase, xylanase, amylase, protease and lignin degrading activities. Five genera including
Enterobacter
,
Pantoea
,
Shigella
,
Acinetobacter
, and
Serratia
, are represented only by the leaves, while four genera such as
Enterobacter, Escherichia, Kosakonia
, and
Pseudomonas
are represented only by the shoots. Five genera including,
Klebsiella
,
Enterobacter, Pseudomonas, Burkholderia
, and
Bacillus
are represented only by the roots of rice plants. All these strains demonstrated cell wall hydrolytic enzyme activities, except pectinase. All treatments, either individual strains or consortia of strains, enhanced rice plant growth at germination, seedling, vegetative and reproductive stages. Among four (I-IV) consortia, consortium-III generated the maximum rice yield under 70% lower doses of urea compared to that of control (treated with only fertilizer). The decoded genome of
Klebsiella
sp. HSTU-F2D4R revealed
nif
-cluster, chemotaxis, phosphates, biofilm formation, and organophosphorus insecticide-degrading genes. Sufficient insecticide-degrading proteins belonging to strain HSTU-F2D4R had interacted with diazinon, confirmed in molecular docking and formed potential catalytic triads, suggesting the strains have bioremediation potential with biofertilizer applications in rice cultivation. |
| doi_str_mv | 10.1007/s00203-023-03564-2 |
| format | Article |
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Enterobacter
,
Pantoea
,
Shigella
,
Acinetobacter
, and
Serratia
, are represented only by the leaves, while four genera such as
Enterobacter, Escherichia, Kosakonia
, and
Pseudomonas
are represented only by the shoots. Five genera including,
Klebsiella
,
Enterobacter, Pseudomonas, Burkholderia
, and
Bacillus
are represented only by the roots of rice plants. All these strains demonstrated cell wall hydrolytic enzyme activities, except pectinase. All treatments, either individual strains or consortia of strains, enhanced rice plant growth at germination, seedling, vegetative and reproductive stages. Among four (I-IV) consortia, consortium-III generated the maximum rice yield under 70% lower doses of urea compared to that of control (treated with only fertilizer). The decoded genome of
Klebsiella
sp. HSTU-F2D4R revealed
nif
-cluster, chemotaxis, phosphates, biofilm formation, and organophosphorus insecticide-degrading genes. Sufficient insecticide-degrading proteins belonging to strain HSTU-F2D4R had interacted with diazinon, confirmed in molecular docking and formed potential catalytic triads, suggesting the strains have bioremediation potential with biofertilizer applications in rice cultivation.</description><identifier>ISSN: 0302-8933</identifier><identifier>EISSN: 1432-072X</identifier><identifier>DOI: 10.1007/s00203-023-03564-2</identifier><identifier>PMID: 37165147</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Agrochemicals ; Bacteria ; Biochemistry ; Biodegradation ; Biofertilizers ; Biofilms ; Biomedical and Life Sciences ; Bioremediation ; Biotechnology ; Cell Biology ; Cell walls ; Cellulase ; Chemotaxis ; Consortia ; Crop yield ; Cultivation ; Degradation ; Diazinon ; Diazinon - metabolism ; Ecology ; Endophytes ; Enterobacter ; Enterobacter - genetics ; Enzymatic activity ; Fertilizers ; Fungicides ; Genes ; Genes, Regulator ; Genomes ; Germination ; Grain cultivation ; Infrared spectroscopy ; Insecticides ; Insecticides - metabolism ; Klebsiella ; Klebsiella - genetics ; Life Sciences ; Microbial Ecology ; Microbiology ; Molecular docking ; Molecular Docking Simulation ; Organophosphorus Compounds ; Organophosphorus pesticides ; Original Paper ; Oryza ; Pectinase ; Pesticides ; Phosphates ; Plant bacterial diseases ; Plant growth ; Plant Roots - microbiology ; Pseudomonas ; Rice ; Seedlings ; Spectroscopy, Fourier Transform Infrared ; Strains (organisms) ; Urea ; Urea - metabolism ; Xylanase</subject><ispartof>Archives of microbiology, 2023-06, Vol.205 (6), p.231-231, Article 231</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-2921ae7131d01fdc67135c4bfd8b3fd93f97e72c9ecfb7bbefbaae5029bb50bb3</citedby><cites>FETCH-LOGICAL-c375t-2921ae7131d01fdc67135c4bfd8b3fd93f97e72c9ecfb7bbefbaae5029bb50bb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00203-023-03564-2$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00203-023-03564-2$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,778,782,27907,27908,41471,42540,51302</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37165147$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Haque, Md. Azizul</creatorcontrib><creatorcontrib>Simo</creatorcontrib><creatorcontrib>Prodhan, Md. Yeasin</creatorcontrib><creatorcontrib>Ghosh, Sibdas</creatorcontrib><creatorcontrib>Hossain, Md. Shohorab</creatorcontrib><creatorcontrib>Rahman, Aminur</creatorcontrib><creatorcontrib>Sarker, Uttam Kumar</creatorcontrib><creatorcontrib>Haque, Md. Atiqul</creatorcontrib><title>Enhanced rice plant (BRRI-28) growth at lower doses of urea caused by diazinon mineralizing endophytic bacterial consortia and explorations of relevant regulatory genes in a Klebsiella sp. strain HSTU-F2D4R</title><title>Archives of microbiology</title><addtitle>Arch Microbiol</addtitle><addtitle>Arch Microbiol</addtitle><description>Endophytic biostimulant with pesticide bioremediation activities may reduce agrochemicals application in rice cultivation. The present study evaluates diazinon-degrading endophytic bacteria, isolated from rice plants grown in the fields with pesticide amalgamation, leading to increased productivity in high-yielding rice plants. These endophytes showed capabilities of decomposing diazinon, confirmed by FT-IR spectra analysis. Growth promoting activities of these endophytes can be attributed to their abilities to produce an increased level of IAA content and to demonstrate high level ACC-deaminase activities. Furthermore, these endophytes demonstrated enhanced level of extracellular cellulase, xylanase, amylase, protease and lignin degrading activities. Five genera including
Enterobacter
,
Pantoea
,
Shigella
,
Acinetobacter
, and
Serratia
, are represented only by the leaves, while four genera such as
Enterobacter, Escherichia, Kosakonia
, and
Pseudomonas
are represented only by the shoots. Five genera including,
Klebsiella
,
Enterobacter, Pseudomonas, Burkholderia
, and
Bacillus
are represented only by the roots of rice plants. All these strains demonstrated cell wall hydrolytic enzyme activities, except pectinase. All treatments, either individual strains or consortia of strains, enhanced rice plant growth at germination, seedling, vegetative and reproductive stages. Among four (I-IV) consortia, consortium-III generated the maximum rice yield under 70% lower doses of urea compared to that of control (treated with only fertilizer). The decoded genome of
Klebsiella
sp. HSTU-F2D4R revealed
nif
-cluster, chemotaxis, phosphates, biofilm formation, and organophosphorus insecticide-degrading genes. Sufficient insecticide-degrading proteins belonging to strain HSTU-F2D4R had interacted with diazinon, confirmed in molecular docking and formed potential catalytic triads, suggesting the strains have bioremediation potential with biofertilizer applications in rice cultivation.</description><subject>Agrochemicals</subject><subject>Bacteria</subject><subject>Biochemistry</subject><subject>Biodegradation</subject><subject>Biofertilizers</subject><subject>Biofilms</subject><subject>Biomedical and Life Sciences</subject><subject>Bioremediation</subject><subject>Biotechnology</subject><subject>Cell Biology</subject><subject>Cell walls</subject><subject>Cellulase</subject><subject>Chemotaxis</subject><subject>Consortia</subject><subject>Crop yield</subject><subject>Cultivation</subject><subject>Degradation</subject><subject>Diazinon</subject><subject>Diazinon - metabolism</subject><subject>Ecology</subject><subject>Endophytes</subject><subject>Enterobacter</subject><subject>Enterobacter - genetics</subject><subject>Enzymatic activity</subject><subject>Fertilizers</subject><subject>Fungicides</subject><subject>Genes</subject><subject>Genes, Regulator</subject><subject>Genomes</subject><subject>Germination</subject><subject>Grain cultivation</subject><subject>Infrared spectroscopy</subject><subject>Insecticides</subject><subject>Insecticides - metabolism</subject><subject>Klebsiella</subject><subject>Klebsiella - genetics</subject><subject>Life Sciences</subject><subject>Microbial Ecology</subject><subject>Microbiology</subject><subject>Molecular docking</subject><subject>Molecular Docking Simulation</subject><subject>Organophosphorus Compounds</subject><subject>Organophosphorus pesticides</subject><subject>Original Paper</subject><subject>Oryza</subject><subject>Pectinase</subject><subject>Pesticides</subject><subject>Phosphates</subject><subject>Plant bacterial diseases</subject><subject>Plant growth</subject><subject>Plant Roots - microbiology</subject><subject>Pseudomonas</subject><subject>Rice</subject><subject>Seedlings</subject><subject>Spectroscopy, Fourier Transform Infrared</subject><subject>Strains (organisms)</subject><subject>Urea</subject><subject>Urea - metabolism</subject><subject>Xylanase</subject><issn>0302-8933</issn><issn>1432-072X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kc9u1DAQxiMEokvhBTigkbi0hxT_2WySI5SWVlRCWlqJWzR2JruuvHawHdrlIXkmvGwBiQMHy57x7_tmpK8oXnJ2whmr30TGBJMlE_nIajEvxaNixudSlKwWXx4XMyaZKJtWyoPiWYy3jHHRNM3T4kDWfFHxeT0rfpy5NTpNPQSjCUaLLsHRu-XyshTNMayCv0trwATW31GA3keK4AeYAiFonGJWqi30Br8b5x1sjKOA1uRqBeR6P663yWhQqBMFgxa0d9GHZBDQ9UD3o_UBk8ndnW8gS992OwRaTRaTD1tYkctDjQOEj5ZUNGQtQhxPIKaAuX_x-fqmPBfv58vnxZMBbaQXD_dhcXN-dn16UV59-nB5-vaq1LKuUilawZFqLnnP-NDrRX5Weq6GvlFy6Fs5tDXVQrekB1UrRYNCpIqJVqmKKSUPi6O97xj814li6jYm6t1ejvwUO9FwUbGqkiyjr_9Bb_0UXN5uR_F6IReiyZTYUzr4GAMN3RjMBsO246zbpd3t0-5y2t2vtDuRRa8erCe1of6P5He8GZB7IOYvt6Lwd_Z_bH8CPEK4kg</recordid><startdate>20230601</startdate><enddate>20230601</enddate><creator>Haque, Md. 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Azizul ; Simo ; Prodhan, Md. Yeasin ; Ghosh, Sibdas ; Hossain, Md. Shohorab ; Rahman, Aminur ; Sarker, Uttam Kumar ; Haque, Md. Atiqul</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-2921ae7131d01fdc67135c4bfd8b3fd93f97e72c9ecfb7bbefbaae5029bb50bb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Agrochemicals</topic><topic>Bacteria</topic><topic>Biochemistry</topic><topic>Biodegradation</topic><topic>Biofertilizers</topic><topic>Biofilms</topic><topic>Biomedical and Life Sciences</topic><topic>Bioremediation</topic><topic>Biotechnology</topic><topic>Cell Biology</topic><topic>Cell walls</topic><topic>Cellulase</topic><topic>Chemotaxis</topic><topic>Consortia</topic><topic>Crop yield</topic><topic>Cultivation</topic><topic>Degradation</topic><topic>Diazinon</topic><topic>Diazinon - metabolism</topic><topic>Ecology</topic><topic>Endophytes</topic><topic>Enterobacter</topic><topic>Enterobacter - genetics</topic><topic>Enzymatic activity</topic><topic>Fertilizers</topic><topic>Fungicides</topic><topic>Genes</topic><topic>Genes, Regulator</topic><topic>Genomes</topic><topic>Germination</topic><topic>Grain cultivation</topic><topic>Infrared spectroscopy</topic><topic>Insecticides</topic><topic>Insecticides - metabolism</topic><topic>Klebsiella</topic><topic>Klebsiella - genetics</topic><topic>Life Sciences</topic><topic>Microbial Ecology</topic><topic>Microbiology</topic><topic>Molecular docking</topic><topic>Molecular Docking Simulation</topic><topic>Organophosphorus Compounds</topic><topic>Organophosphorus pesticides</topic><topic>Original Paper</topic><topic>Oryza</topic><topic>Pectinase</topic><topic>Pesticides</topic><topic>Phosphates</topic><topic>Plant bacterial diseases</topic><topic>Plant growth</topic><topic>Plant Roots - microbiology</topic><topic>Pseudomonas</topic><topic>Rice</topic><topic>Seedlings</topic><topic>Spectroscopy, Fourier Transform Infrared</topic><topic>Strains (organisms)</topic><topic>Urea</topic><topic>Urea - metabolism</topic><topic>Xylanase</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Haque, Md. 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Azizul</au><au>Simo</au><au>Prodhan, Md. Yeasin</au><au>Ghosh, Sibdas</au><au>Hossain, Md. Shohorab</au><au>Rahman, Aminur</au><au>Sarker, Uttam Kumar</au><au>Haque, Md. Atiqul</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Enhanced rice plant (BRRI-28) growth at lower doses of urea caused by diazinon mineralizing endophytic bacterial consortia and explorations of relevant regulatory genes in a Klebsiella sp. strain HSTU-F2D4R</atitle><jtitle>Archives of microbiology</jtitle><stitle>Arch Microbiol</stitle><addtitle>Arch Microbiol</addtitle><date>2023-06-01</date><risdate>2023</risdate><volume>205</volume><issue>6</issue><spage>231</spage><epage>231</epage><pages>231-231</pages><artnum>231</artnum><issn>0302-8933</issn><eissn>1432-072X</eissn><abstract>Endophytic biostimulant with pesticide bioremediation activities may reduce agrochemicals application in rice cultivation. The present study evaluates diazinon-degrading endophytic bacteria, isolated from rice plants grown in the fields with pesticide amalgamation, leading to increased productivity in high-yielding rice plants. These endophytes showed capabilities of decomposing diazinon, confirmed by FT-IR spectra analysis. Growth promoting activities of these endophytes can be attributed to their abilities to produce an increased level of IAA content and to demonstrate high level ACC-deaminase activities. Furthermore, these endophytes demonstrated enhanced level of extracellular cellulase, xylanase, amylase, protease and lignin degrading activities. Five genera including
Enterobacter
,
Pantoea
,
Shigella
,
Acinetobacter
, and
Serratia
, are represented only by the leaves, while four genera such as
Enterobacter, Escherichia, Kosakonia
, and
Pseudomonas
are represented only by the shoots. Five genera including,
Klebsiella
,
Enterobacter, Pseudomonas, Burkholderia
, and
Bacillus
are represented only by the roots of rice plants. All these strains demonstrated cell wall hydrolytic enzyme activities, except pectinase. All treatments, either individual strains or consortia of strains, enhanced rice plant growth at germination, seedling, vegetative and reproductive stages. Among four (I-IV) consortia, consortium-III generated the maximum rice yield under 70% lower doses of urea compared to that of control (treated with only fertilizer). The decoded genome of
Klebsiella
sp. HSTU-F2D4R revealed
nif
-cluster, chemotaxis, phosphates, biofilm formation, and organophosphorus insecticide-degrading genes. Sufficient insecticide-degrading proteins belonging to strain HSTU-F2D4R had interacted with diazinon, confirmed in molecular docking and formed potential catalytic triads, suggesting the strains have bioremediation potential with biofertilizer applications in rice cultivation.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>37165147</pmid><doi>10.1007/s00203-023-03564-2</doi><tpages>1</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0302-8933 |
| ispartof | Archives of microbiology, 2023-06, Vol.205 (6), p.231-231, Article 231 |
| issn | 0302-8933 1432-072X |
| language | eng |
| recordid | cdi_proquest_miscellaneous_2812505530 |
| source | MEDLINE; Springer Nature - Complete Springer Journals |
| subjects | Agrochemicals Bacteria Biochemistry Biodegradation Biofertilizers Biofilms Biomedical and Life Sciences Bioremediation Biotechnology Cell Biology Cell walls Cellulase Chemotaxis Consortia Crop yield Cultivation Degradation Diazinon Diazinon - metabolism Ecology Endophytes Enterobacter Enterobacter - genetics Enzymatic activity Fertilizers Fungicides Genes Genes, Regulator Genomes Germination Grain cultivation Infrared spectroscopy Insecticides Insecticides - metabolism Klebsiella Klebsiella - genetics Life Sciences Microbial Ecology Microbiology Molecular docking Molecular Docking Simulation Organophosphorus Compounds Organophosphorus pesticides Original Paper Oryza Pectinase Pesticides Phosphates Plant bacterial diseases Plant growth Plant Roots - microbiology Pseudomonas Rice Seedlings Spectroscopy, Fourier Transform Infrared Strains (organisms) Urea Urea - metabolism Xylanase |
| title | Enhanced rice plant (BRRI-28) growth at lower doses of urea caused by diazinon mineralizing endophytic bacterial consortia and explorations of relevant regulatory genes in a Klebsiella sp. strain HSTU-F2D4R |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-16T08%3A36%3A07IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Enhanced%20rice%20plant%20(BRRI-28)%20growth%20at%20lower%20doses%20of%20urea%20caused%20by%20diazinon%20mineralizing%20endophytic%20bacterial%20consortia%20and%20explorations%20of%20relevant%20regulatory%20genes%20in%20a%20Klebsiella%20sp.%20strain%20HSTU-F2D4R&rft.jtitle=Archives%20of%20microbiology&rft.au=Haque,%20Md.%20Azizul&rft.date=2023-06-01&rft.volume=205&rft.issue=6&rft.spage=231&rft.epage=231&rft.pages=231-231&rft.artnum=231&rft.issn=0302-8933&rft.eissn=1432-072X&rft_id=info:doi/10.1007/s00203-023-03564-2&rft_dat=%3Cproquest_cross%3E2812505530%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2811763628&rft_id=info:pmid/37165147&rfr_iscdi=true |