Biochemical and SSR based molecular characterization of elite rice varieties for straw lignocellulose
Background Lignocellulosic biomass from rice straw possesses enormous potential in generating bioenergy thereby reducing the dependence of human on non-renewable fuel sources. Developing rice varieties of such calibre necessitates biochemical characterization as well as assessing the presence of gen...
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| Veröffentlicht in: | Molecular biology reports 2023-07, Vol.50 (7), p.5535-5545 |
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| creator | Mishra, Abinash Sahoo, Jyoti Prakash Swain, Bishnupriya Nanda, Spandan Mishra, Tapash Kumar Dwibedi, Sanat Kumar Jena, Bandita Pradhan, Banshidhar Parida, Manas Ranjan Jena, Pradip Kumar Samantaray, Saubhagya Manjari Samantaray, Debiprasad Mohanty, Mahendra Kumar Dash, Manasi |
| description | Background
Lignocellulosic biomass from rice straw possesses enormous potential in generating bioenergy thereby reducing the dependence of human on non-renewable fuel sources. Developing rice varieties of such calibre necessitates biochemical characterization as well as assessing the presence of genetic diversity among the rice genotypes with respect to cellulose content.
Methods and results
Forty-three elite rice genotypes were selected for biochemical characterization and SSR marker-based genetic fingerprinting. For genotyping, 13
cellulose synthase
specific polymorphic markers were used. The diversity analysis was performed using TASSEL 5.0 and GenAlE × 6.51b2, software program. Of the 43 rice varieties, CR-Dhan-601, CR-Dhan-1014, Mahanadi, Jagabandhu, Gouri, Samanta and Chandrama were found to possess desirable lignocellulosic composition with respect to harnessing green fuels. The marker OsCESA-1.3 expressed the highest PIC (0.640), while the marker OsCESA-6.3 of lowest PIC (0.128). A moderate average estimate (0.367) of PIC was observed under current set of genotypes and marker system. The dendrogram analysis grouped the rice genotypes into two principal clusters i.e., cluster I and II. Cluster-II is monogenetic, while cluster-I is having 42 genotypes.
Conclusions
The moderate level of both PIC and H average estimates indicate the narrow genetic bases of the germplasms. The varieties falling under different clusters possessing desirable lignocellulosic composition can be used in a hybridization programme to develop bioenergy efficient varieties. The promising varietal combinations that can be used as parents for developing bioenergy efficient genotypes are Kanchan / Gobinda, Mahanadi / Ramachandi, Mahanadi / Rambha, Mahanadi / Manika, Rambha / Manika, Rambha / Indravati and CR-Dhan-601 / Manika as they offer an advantage of higher cellulose accumulation. This study helped in identification of suitable dual purpose rice varieties for biofuel production without compromising food security. |
| doi_str_mv | 10.1007/s11033-023-08454-w |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2811569108</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2828977260</sourcerecordid><originalsourceid>FETCH-LOGICAL-c375t-4caa8cd7c58f21436813919a1cbd9630f656eada3b2bd916af0912d8c7e94ada3</originalsourceid><addsrcrecordid>eNp9kU1PHDEMhqOqqGxp_wCHKlIvvUyJJ5NJ5khRvySkSkDPkTfjgaDMBJIZVvDrm-1CkXrgYFmyH7-2_DJ2COIzCKGPMoCQshJ1CdOoptq8YitQWlZNp81rthJSQNUYBfvsbc7XQogGtHrD9qUGpQTAitEXH90Vjd5h4Dj1_Pz8jK8xU8_HGMgtARN3V5jQzZT8A84-TjwOnIKfiSfviN9h8jR7ynyIiec54YYHfzlFRyEsIWZ6x_YGDJneP-YD9vvb14uTH9Xpr-8_T45PKye1mqvGIRrXa6fMUEMjWwOygw7BrfuulWJoVUvYo1zXpQAtDqKDujdOU9ds6wfs0073JsXbhfJsR5-3V-BEccm2NgCq7UCYgn78D72OS5rKdYWqTad13YpC1TvKpZhzosHeJD9iurcg7NYEuzPBFhPsXxPspgx9eJRe1iP1_0aevl4AuQNyaU2XlJ53vyD7B0V3k5M</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2828977260</pqid></control><display><type>article</type><title>Biochemical and SSR based molecular characterization of elite rice varieties for straw lignocellulose</title><source>SpringerNature Journals</source><creator>Mishra, Abinash ; Sahoo, Jyoti Prakash ; Swain, Bishnupriya ; Nanda, Spandan ; Mishra, Tapash Kumar ; Dwibedi, Sanat Kumar ; Jena, Bandita ; Pradhan, Banshidhar ; Parida, Manas Ranjan ; Jena, Pradip Kumar ; Samantaray, Saubhagya Manjari ; Samantaray, Debiprasad ; Mohanty, Mahendra Kumar ; Dash, Manasi</creator><creatorcontrib>Mishra, Abinash ; Sahoo, Jyoti Prakash ; Swain, Bishnupriya ; Nanda, Spandan ; Mishra, Tapash Kumar ; Dwibedi, Sanat Kumar ; Jena, Bandita ; Pradhan, Banshidhar ; Parida, Manas Ranjan ; Jena, Pradip Kumar ; Samantaray, Saubhagya Manjari ; Samantaray, Debiprasad ; Mohanty, Mahendra Kumar ; Dash, Manasi</creatorcontrib><description>Background
Lignocellulosic biomass from rice straw possesses enormous potential in generating bioenergy thereby reducing the dependence of human on non-renewable fuel sources. Developing rice varieties of such calibre necessitates biochemical characterization as well as assessing the presence of genetic diversity among the rice genotypes with respect to cellulose content.
Methods and results
Forty-three elite rice genotypes were selected for biochemical characterization and SSR marker-based genetic fingerprinting. For genotyping, 13
cellulose synthase
specific polymorphic markers were used. The diversity analysis was performed using TASSEL 5.0 and GenAlE × 6.51b2, software program. Of the 43 rice varieties, CR-Dhan-601, CR-Dhan-1014, Mahanadi, Jagabandhu, Gouri, Samanta and Chandrama were found to possess desirable lignocellulosic composition with respect to harnessing green fuels. The marker OsCESA-1.3 expressed the highest PIC (0.640), while the marker OsCESA-6.3 of lowest PIC (0.128). A moderate average estimate (0.367) of PIC was observed under current set of genotypes and marker system. The dendrogram analysis grouped the rice genotypes into two principal clusters i.e., cluster I and II. Cluster-II is monogenetic, while cluster-I is having 42 genotypes.
Conclusions
The moderate level of both PIC and H average estimates indicate the narrow genetic bases of the germplasms. The varieties falling under different clusters possessing desirable lignocellulosic composition can be used in a hybridization programme to develop bioenergy efficient varieties. The promising varietal combinations that can be used as parents for developing bioenergy efficient genotypes are Kanchan / Gobinda, Mahanadi / Ramachandi, Mahanadi / Rambha, Mahanadi / Manika, Rambha / Manika, Rambha / Indravati and CR-Dhan-601 / Manika as they offer an advantage of higher cellulose accumulation. This study helped in identification of suitable dual purpose rice varieties for biofuel production without compromising food security.</description><identifier>ISSN: 0301-4851</identifier><identifier>EISSN: 1573-4978</identifier><identifier>DOI: 10.1007/s11033-023-08454-w</identifier><identifier>PMID: 37155011</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Animal Anatomy ; Animal Biochemistry ; Biofuels ; Biomedical and Life Sciences ; Cellulose ; Cellulose synthase ; DNA fingerprinting ; Food security ; Genetic diversity ; Genotypes ; Genotyping ; Histology ; Hybridization ; Life Sciences ; Lignocellulose ; Morphology ; Original Article ; Rice ; Straw</subject><ispartof>Molecular biology reports, 2023-07, Vol.50 (7), p.5535-5545</ispartof><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2023. The Author(s), under exclusive licence to Springer Nature B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c375t-4caa8cd7c58f21436813919a1cbd9630f656eada3b2bd916af0912d8c7e94ada3</citedby><cites>FETCH-LOGICAL-c375t-4caa8cd7c58f21436813919a1cbd9630f656eada3b2bd916af0912d8c7e94ada3</cites><orcidid>0000-0002-0990-5426</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11033-023-08454-w$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11033-023-08454-w$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>315,781,785,27929,27930,41493,42562,51324</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37155011$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Mishra, Abinash</creatorcontrib><creatorcontrib>Sahoo, Jyoti Prakash</creatorcontrib><creatorcontrib>Swain, Bishnupriya</creatorcontrib><creatorcontrib>Nanda, Spandan</creatorcontrib><creatorcontrib>Mishra, Tapash Kumar</creatorcontrib><creatorcontrib>Dwibedi, Sanat Kumar</creatorcontrib><creatorcontrib>Jena, Bandita</creatorcontrib><creatorcontrib>Pradhan, Banshidhar</creatorcontrib><creatorcontrib>Parida, Manas Ranjan</creatorcontrib><creatorcontrib>Jena, Pradip Kumar</creatorcontrib><creatorcontrib>Samantaray, Saubhagya Manjari</creatorcontrib><creatorcontrib>Samantaray, Debiprasad</creatorcontrib><creatorcontrib>Mohanty, Mahendra Kumar</creatorcontrib><creatorcontrib>Dash, Manasi</creatorcontrib><title>Biochemical and SSR based molecular characterization of elite rice varieties for straw lignocellulose</title><title>Molecular biology reports</title><addtitle>Mol Biol Rep</addtitle><addtitle>Mol Biol Rep</addtitle><description>Background
Lignocellulosic biomass from rice straw possesses enormous potential in generating bioenergy thereby reducing the dependence of human on non-renewable fuel sources. Developing rice varieties of such calibre necessitates biochemical characterization as well as assessing the presence of genetic diversity among the rice genotypes with respect to cellulose content.
Methods and results
Forty-three elite rice genotypes were selected for biochemical characterization and SSR marker-based genetic fingerprinting. For genotyping, 13
cellulose synthase
specific polymorphic markers were used. The diversity analysis was performed using TASSEL 5.0 and GenAlE × 6.51b2, software program. Of the 43 rice varieties, CR-Dhan-601, CR-Dhan-1014, Mahanadi, Jagabandhu, Gouri, Samanta and Chandrama were found to possess desirable lignocellulosic composition with respect to harnessing green fuels. The marker OsCESA-1.3 expressed the highest PIC (0.640), while the marker OsCESA-6.3 of lowest PIC (0.128). A moderate average estimate (0.367) of PIC was observed under current set of genotypes and marker system. The dendrogram analysis grouped the rice genotypes into two principal clusters i.e., cluster I and II. Cluster-II is monogenetic, while cluster-I is having 42 genotypes.
Conclusions
The moderate level of both PIC and H average estimates indicate the narrow genetic bases of the germplasms. The varieties falling under different clusters possessing desirable lignocellulosic composition can be used in a hybridization programme to develop bioenergy efficient varieties. The promising varietal combinations that can be used as parents for developing bioenergy efficient genotypes are Kanchan / Gobinda, Mahanadi / Ramachandi, Mahanadi / Rambha, Mahanadi / Manika, Rambha / Manika, Rambha / Indravati and CR-Dhan-601 / Manika as they offer an advantage of higher cellulose accumulation. This study helped in identification of suitable dual purpose rice varieties for biofuel production without compromising food security.</description><subject>Animal Anatomy</subject><subject>Animal Biochemistry</subject><subject>Biofuels</subject><subject>Biomedical and Life Sciences</subject><subject>Cellulose</subject><subject>Cellulose synthase</subject><subject>DNA fingerprinting</subject><subject>Food security</subject><subject>Genetic diversity</subject><subject>Genotypes</subject><subject>Genotyping</subject><subject>Histology</subject><subject>Hybridization</subject><subject>Life Sciences</subject><subject>Lignocellulose</subject><subject>Morphology</subject><subject>Original Article</subject><subject>Rice</subject><subject>Straw</subject><issn>0301-4851</issn><issn>1573-4978</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU1PHDEMhqOqqGxp_wCHKlIvvUyJJ5NJ5khRvySkSkDPkTfjgaDMBJIZVvDrm-1CkXrgYFmyH7-2_DJ2COIzCKGPMoCQshJ1CdOoptq8YitQWlZNp81rthJSQNUYBfvsbc7XQogGtHrD9qUGpQTAitEXH90Vjd5h4Dj1_Pz8jK8xU8_HGMgtARN3V5jQzZT8A84-TjwOnIKfiSfviN9h8jR7ynyIiec54YYHfzlFRyEsIWZ6x_YGDJneP-YD9vvb14uTH9Xpr-8_T45PKye1mqvGIRrXa6fMUEMjWwOygw7BrfuulWJoVUvYo1zXpQAtDqKDujdOU9ds6wfs0073JsXbhfJsR5-3V-BEccm2NgCq7UCYgn78D72OS5rKdYWqTad13YpC1TvKpZhzosHeJD9iurcg7NYEuzPBFhPsXxPspgx9eJRe1iP1_0aevl4AuQNyaU2XlJ53vyD7B0V3k5M</recordid><startdate>20230701</startdate><enddate>20230701</enddate><creator>Mishra, 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B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-0990-5426</orcidid></search><sort><creationdate>20230701</creationdate><title>Biochemical and SSR based molecular characterization of elite rice varieties for straw lignocellulose</title><author>Mishra, Abinash ; Sahoo, Jyoti Prakash ; Swain, Bishnupriya ; Nanda, Spandan ; Mishra, Tapash Kumar ; Dwibedi, Sanat Kumar ; Jena, Bandita ; Pradhan, Banshidhar ; Parida, Manas Ranjan ; Jena, Pradip Kumar ; Samantaray, Saubhagya Manjari ; Samantaray, Debiprasad ; Mohanty, Mahendra Kumar ; Dash, Manasi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c375t-4caa8cd7c58f21436813919a1cbd9630f656eada3b2bd916af0912d8c7e94ada3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Animal Anatomy</topic><topic>Animal Biochemistry</topic><topic>Biofuels</topic><topic>Biomedical and Life Sciences</topic><topic>Cellulose</topic><topic>Cellulose synthase</topic><topic>DNA fingerprinting</topic><topic>Food security</topic><topic>Genetic diversity</topic><topic>Genotypes</topic><topic>Genotyping</topic><topic>Histology</topic><topic>Hybridization</topic><topic>Life Sciences</topic><topic>Lignocellulose</topic><topic>Morphology</topic><topic>Original Article</topic><topic>Rice</topic><topic>Straw</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Mishra, Abinash</creatorcontrib><creatorcontrib>Sahoo, Jyoti Prakash</creatorcontrib><creatorcontrib>Swain, Bishnupriya</creatorcontrib><creatorcontrib>Nanda, Spandan</creatorcontrib><creatorcontrib>Mishra, Tapash Kumar</creatorcontrib><creatorcontrib>Dwibedi, Sanat Kumar</creatorcontrib><creatorcontrib>Jena, Bandita</creatorcontrib><creatorcontrib>Pradhan, Banshidhar</creatorcontrib><creatorcontrib>Parida, Manas Ranjan</creatorcontrib><creatorcontrib>Jena, Pradip Kumar</creatorcontrib><creatorcontrib>Samantaray, Saubhagya Manjari</creatorcontrib><creatorcontrib>Samantaray, Debiprasad</creatorcontrib><creatorcontrib>Mohanty, Mahendra 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Manasi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Biochemical and SSR based molecular characterization of elite rice varieties for straw lignocellulose</atitle><jtitle>Molecular biology reports</jtitle><stitle>Mol Biol Rep</stitle><addtitle>Mol Biol Rep</addtitle><date>2023-07-01</date><risdate>2023</risdate><volume>50</volume><issue>7</issue><spage>5535</spage><epage>5545</epage><pages>5535-5545</pages><issn>0301-4851</issn><eissn>1573-4978</eissn><abstract>Background
Lignocellulosic biomass from rice straw possesses enormous potential in generating bioenergy thereby reducing the dependence of human on non-renewable fuel sources. Developing rice varieties of such calibre necessitates biochemical characterization as well as assessing the presence of genetic diversity among the rice genotypes with respect to cellulose content.
Methods and results
Forty-three elite rice genotypes were selected for biochemical characterization and SSR marker-based genetic fingerprinting. For genotyping, 13
cellulose synthase
specific polymorphic markers were used. The diversity analysis was performed using TASSEL 5.0 and GenAlE × 6.51b2, software program. Of the 43 rice varieties, CR-Dhan-601, CR-Dhan-1014, Mahanadi, Jagabandhu, Gouri, Samanta and Chandrama were found to possess desirable lignocellulosic composition with respect to harnessing green fuels. The marker OsCESA-1.3 expressed the highest PIC (0.640), while the marker OsCESA-6.3 of lowest PIC (0.128). A moderate average estimate (0.367) of PIC was observed under current set of genotypes and marker system. The dendrogram analysis grouped the rice genotypes into two principal clusters i.e., cluster I and II. Cluster-II is monogenetic, while cluster-I is having 42 genotypes.
Conclusions
The moderate level of both PIC and H average estimates indicate the narrow genetic bases of the germplasms. The varieties falling under different clusters possessing desirable lignocellulosic composition can be used in a hybridization programme to develop bioenergy efficient varieties. The promising varietal combinations that can be used as parents for developing bioenergy efficient genotypes are Kanchan / Gobinda, Mahanadi / Ramachandi, Mahanadi / Rambha, Mahanadi / Manika, Rambha / Manika, Rambha / Indravati and CR-Dhan-601 / Manika as they offer an advantage of higher cellulose accumulation. This study helped in identification of suitable dual purpose rice varieties for biofuel production without compromising food security.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>37155011</pmid><doi>10.1007/s11033-023-08454-w</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-0990-5426</orcidid></addata></record> |
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| subjects | Animal Anatomy Animal Biochemistry Biofuels Biomedical and Life Sciences Cellulose Cellulose synthase DNA fingerprinting Food security Genetic diversity Genotypes Genotyping Histology Hybridization Life Sciences Lignocellulose Morphology Original Article Rice Straw |
| title | Biochemical and SSR based molecular characterization of elite rice varieties for straw lignocellulose |
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