PtyLab.m/py/jl: a cross-platform, open-source inverse modeling toolbox for conventional and Fourier ptychography

Conventional (CP) and Fourier (FP) ptychography have emerged as versatile quantitative phase imaging techniques. While the main application cases for each technique are different, namely lens-less short wavelength imaging for CP and lens-based visible light imaging for FP, both methods share a commo...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Optics express 2023-04, Vol.31 (9), p.13763-13797
Hauptverfasser: Loetgering, Lars, Du, Mengqi, Boonzajer Flaes, Dirk, Aidukas, Tomas, Wechsler, Felix, Penagos Molina, Daniel S, Rose, Max, Pelekanidis, Antonios, Eschen, Wilhelm, Hess, Jürgen, Wilhein, Thomas, Heintzmann, Rainer, Rothhardt, Jan, Witte, Stefan
Format: Artikel
Sprache:eng
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 13797
container_issue 9
container_start_page 13763
container_title Optics express
container_volume 31
creator Loetgering, Lars
Du, Mengqi
Boonzajer Flaes, Dirk
Aidukas, Tomas
Wechsler, Felix
Penagos Molina, Daniel S
Rose, Max
Pelekanidis, Antonios
Eschen, Wilhelm
Hess, Jürgen
Wilhein, Thomas
Heintzmann, Rainer
Rothhardt, Jan
Witte, Stefan
description Conventional (CP) and Fourier (FP) ptychography have emerged as versatile quantitative phase imaging techniques. While the main application cases for each technique are different, namely lens-less short wavelength imaging for CP and lens-based visible light imaging for FP, both methods share a common algorithmic ground. CP and FP have in part independently evolved to include experimentally robust forward models and inversion techniques. This separation has resulted in a plethora of algorithmic extensions, some of which have not crossed the boundary from one modality to the other. Here, we present an open source, cross-platform software, called PtyLab, enabling both CP and FP data analysis in a unified framework. With this framework, we aim to facilitate and accelerate cross-pollination between the two techniques. Moreover, the availability in Matlab, Python, and Julia will set a low barrier to enter each field.
doi_str_mv 10.1364/OE.485370
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_2811568024</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2811568024</sourcerecordid><originalsourceid>FETCH-LOGICAL-c320t-35f8a42492b54366bbd23ad0b087cd47bb76b044cc914542486b1ebe81fcec0c3</originalsourceid><addsrcrecordid>eNpNkNFKwzAUhoMoTqcXvoDkUsFuSZM2nXcyNhUG80KvS5Kebh1pE5NW7Ntb3RSvzoHznR_-D6ErSiaUpXy6Xkx4ljBBjtAZJTMecZKJ43_7CJ2HsCOEcjETp2jEBE1EnIgz5F7afiXVpJ66froz91hi7W0IkTOyLa2v77B10ETBdl4DrpoP8AFwbQswVbPBrbVG2U88oFjb4dq0lW2kwbIp8HJ4qsBj1_Z6azdeum1_gU5KaQJcHuYYvS0Xr_OnaLV-fJ4_rCLNYtJGLCkzyWM-i1XCWZoqVcRMFkQNbXTBhVIiVYRzrWeUJwOYpYqCgoyWGjTRbIxu9rnO2_cOQpvXVdBgjGzAdiGPM0qTNCMxH9DbPfrT3EOZO1_V0vc5Jfm34Hy9yPeCB_b6ENupGoo_8tco-wI7SHcS</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2811568024</pqid></control><display><type>article</type><title>PtyLab.m/py/jl: a cross-platform, open-source inverse modeling toolbox for conventional and Fourier ptychography</title><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Alma/SFX Local Collection</source><creator>Loetgering, Lars ; Du, Mengqi ; Boonzajer Flaes, Dirk ; Aidukas, Tomas ; Wechsler, Felix ; Penagos Molina, Daniel S ; Rose, Max ; Pelekanidis, Antonios ; Eschen, Wilhelm ; Hess, Jürgen ; Wilhein, Thomas ; Heintzmann, Rainer ; Rothhardt, Jan ; Witte, Stefan</creator><creatorcontrib>Loetgering, Lars ; Du, Mengqi ; Boonzajer Flaes, Dirk ; Aidukas, Tomas ; Wechsler, Felix ; Penagos Molina, Daniel S ; Rose, Max ; Pelekanidis, Antonios ; Eschen, Wilhelm ; Hess, Jürgen ; Wilhein, Thomas ; Heintzmann, Rainer ; Rothhardt, Jan ; Witte, Stefan</creatorcontrib><description>Conventional (CP) and Fourier (FP) ptychography have emerged as versatile quantitative phase imaging techniques. While the main application cases for each technique are different, namely lens-less short wavelength imaging for CP and lens-based visible light imaging for FP, both methods share a common algorithmic ground. CP and FP have in part independently evolved to include experimentally robust forward models and inversion techniques. This separation has resulted in a plethora of algorithmic extensions, some of which have not crossed the boundary from one modality to the other. Here, we present an open source, cross-platform software, called PtyLab, enabling both CP and FP data analysis in a unified framework. With this framework, we aim to facilitate and accelerate cross-pollination between the two techniques. Moreover, the availability in Matlab, Python, and Julia will set a low barrier to enter each field.</description><identifier>ISSN: 1094-4087</identifier><identifier>EISSN: 1094-4087</identifier><identifier>DOI: 10.1364/OE.485370</identifier><identifier>PMID: 37157257</identifier><language>eng</language><publisher>United States</publisher><ispartof>Optics express, 2023-04, Vol.31 (9), p.13763-13797</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c320t-35f8a42492b54366bbd23ad0b087cd47bb76b044cc914542486b1ebe81fcec0c3</citedby><cites>FETCH-LOGICAL-c320t-35f8a42492b54366bbd23ad0b087cd47bb76b044cc914542486b1ebe81fcec0c3</cites><orcidid>0000-0002-1899-4395 ; 0000-0002-7280-7693 ; 0000-0002-4950-1936 ; 0000-0001-8574-8306 ; 0000-0001-8979-5185 ; 0000-0002-2698-0372 ; 0000-0003-4329-2421</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>315,782,786,866,27931,27932</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37157257$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Loetgering, Lars</creatorcontrib><creatorcontrib>Du, Mengqi</creatorcontrib><creatorcontrib>Boonzajer Flaes, Dirk</creatorcontrib><creatorcontrib>Aidukas, Tomas</creatorcontrib><creatorcontrib>Wechsler, Felix</creatorcontrib><creatorcontrib>Penagos Molina, Daniel S</creatorcontrib><creatorcontrib>Rose, Max</creatorcontrib><creatorcontrib>Pelekanidis, Antonios</creatorcontrib><creatorcontrib>Eschen, Wilhelm</creatorcontrib><creatorcontrib>Hess, Jürgen</creatorcontrib><creatorcontrib>Wilhein, Thomas</creatorcontrib><creatorcontrib>Heintzmann, Rainer</creatorcontrib><creatorcontrib>Rothhardt, Jan</creatorcontrib><creatorcontrib>Witte, Stefan</creatorcontrib><title>PtyLab.m/py/jl: a cross-platform, open-source inverse modeling toolbox for conventional and Fourier ptychography</title><title>Optics express</title><addtitle>Opt Express</addtitle><description>Conventional (CP) and Fourier (FP) ptychography have emerged as versatile quantitative phase imaging techniques. While the main application cases for each technique are different, namely lens-less short wavelength imaging for CP and lens-based visible light imaging for FP, both methods share a common algorithmic ground. CP and FP have in part independently evolved to include experimentally robust forward models and inversion techniques. This separation has resulted in a plethora of algorithmic extensions, some of which have not crossed the boundary from one modality to the other. Here, we present an open source, cross-platform software, called PtyLab, enabling both CP and FP data analysis in a unified framework. With this framework, we aim to facilitate and accelerate cross-pollination between the two techniques. Moreover, the availability in Matlab, Python, and Julia will set a low barrier to enter each field.</description><issn>1094-4087</issn><issn>1094-4087</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNpNkNFKwzAUhoMoTqcXvoDkUsFuSZM2nXcyNhUG80KvS5Kebh1pE5NW7Ntb3RSvzoHznR_-D6ErSiaUpXy6Xkx4ljBBjtAZJTMecZKJ43_7CJ2HsCOEcjETp2jEBE1EnIgz5F7afiXVpJ66froz91hi7W0IkTOyLa2v77B10ETBdl4DrpoP8AFwbQswVbPBrbVG2U88oFjb4dq0lW2kwbIp8HJ4qsBj1_Z6azdeum1_gU5KaQJcHuYYvS0Xr_OnaLV-fJ4_rCLNYtJGLCkzyWM-i1XCWZoqVcRMFkQNbXTBhVIiVYRzrWeUJwOYpYqCgoyWGjTRbIxu9rnO2_cOQpvXVdBgjGzAdiGPM0qTNCMxH9DbPfrT3EOZO1_V0vc5Jfm34Hy9yPeCB_b6ENupGoo_8tco-wI7SHcS</recordid><startdate>20230424</startdate><enddate>20230424</enddate><creator>Loetgering, Lars</creator><creator>Du, Mengqi</creator><creator>Boonzajer Flaes, Dirk</creator><creator>Aidukas, Tomas</creator><creator>Wechsler, Felix</creator><creator>Penagos Molina, Daniel S</creator><creator>Rose, Max</creator><creator>Pelekanidis, Antonios</creator><creator>Eschen, Wilhelm</creator><creator>Hess, Jürgen</creator><creator>Wilhein, Thomas</creator><creator>Heintzmann, Rainer</creator><creator>Rothhardt, Jan</creator><creator>Witte, Stefan</creator><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-1899-4395</orcidid><orcidid>https://orcid.org/0000-0002-7280-7693</orcidid><orcidid>https://orcid.org/0000-0002-4950-1936</orcidid><orcidid>https://orcid.org/0000-0001-8574-8306</orcidid><orcidid>https://orcid.org/0000-0001-8979-5185</orcidid><orcidid>https://orcid.org/0000-0002-2698-0372</orcidid><orcidid>https://orcid.org/0000-0003-4329-2421</orcidid></search><sort><creationdate>20230424</creationdate><title>PtyLab.m/py/jl: a cross-platform, open-source inverse modeling toolbox for conventional and Fourier ptychography</title><author>Loetgering, Lars ; Du, Mengqi ; Boonzajer Flaes, Dirk ; Aidukas, Tomas ; Wechsler, Felix ; Penagos Molina, Daniel S ; Rose, Max ; Pelekanidis, Antonios ; Eschen, Wilhelm ; Hess, Jürgen ; Wilhein, Thomas ; Heintzmann, Rainer ; Rothhardt, Jan ; Witte, Stefan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c320t-35f8a42492b54366bbd23ad0b087cd47bb76b044cc914542486b1ebe81fcec0c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Loetgering, Lars</creatorcontrib><creatorcontrib>Du, Mengqi</creatorcontrib><creatorcontrib>Boonzajer Flaes, Dirk</creatorcontrib><creatorcontrib>Aidukas, Tomas</creatorcontrib><creatorcontrib>Wechsler, Felix</creatorcontrib><creatorcontrib>Penagos Molina, Daniel S</creatorcontrib><creatorcontrib>Rose, Max</creatorcontrib><creatorcontrib>Pelekanidis, Antonios</creatorcontrib><creatorcontrib>Eschen, Wilhelm</creatorcontrib><creatorcontrib>Hess, Jürgen</creatorcontrib><creatorcontrib>Wilhein, Thomas</creatorcontrib><creatorcontrib>Heintzmann, Rainer</creatorcontrib><creatorcontrib>Rothhardt, Jan</creatorcontrib><creatorcontrib>Witte, Stefan</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Optics express</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Loetgering, Lars</au><au>Du, Mengqi</au><au>Boonzajer Flaes, Dirk</au><au>Aidukas, Tomas</au><au>Wechsler, Felix</au><au>Penagos Molina, Daniel S</au><au>Rose, Max</au><au>Pelekanidis, Antonios</au><au>Eschen, Wilhelm</au><au>Hess, Jürgen</au><au>Wilhein, Thomas</au><au>Heintzmann, Rainer</au><au>Rothhardt, Jan</au><au>Witte, Stefan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>PtyLab.m/py/jl: a cross-platform, open-source inverse modeling toolbox for conventional and Fourier ptychography</atitle><jtitle>Optics express</jtitle><addtitle>Opt Express</addtitle><date>2023-04-24</date><risdate>2023</risdate><volume>31</volume><issue>9</issue><spage>13763</spage><epage>13797</epage><pages>13763-13797</pages><issn>1094-4087</issn><eissn>1094-4087</eissn><abstract>Conventional (CP) and Fourier (FP) ptychography have emerged as versatile quantitative phase imaging techniques. While the main application cases for each technique are different, namely lens-less short wavelength imaging for CP and lens-based visible light imaging for FP, both methods share a common algorithmic ground. CP and FP have in part independently evolved to include experimentally robust forward models and inversion techniques. This separation has resulted in a plethora of algorithmic extensions, some of which have not crossed the boundary from one modality to the other. Here, we present an open source, cross-platform software, called PtyLab, enabling both CP and FP data analysis in a unified framework. With this framework, we aim to facilitate and accelerate cross-pollination between the two techniques. Moreover, the availability in Matlab, Python, and Julia will set a low barrier to enter each field.</abstract><cop>United States</cop><pmid>37157257</pmid><doi>10.1364/OE.485370</doi><tpages>35</tpages><orcidid>https://orcid.org/0000-0002-1899-4395</orcidid><orcidid>https://orcid.org/0000-0002-7280-7693</orcidid><orcidid>https://orcid.org/0000-0002-4950-1936</orcidid><orcidid>https://orcid.org/0000-0001-8574-8306</orcidid><orcidid>https://orcid.org/0000-0001-8979-5185</orcidid><orcidid>https://orcid.org/0000-0002-2698-0372</orcidid><orcidid>https://orcid.org/0000-0003-4329-2421</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1094-4087
ispartof Optics express, 2023-04, Vol.31 (9), p.13763-13797
issn 1094-4087
1094-4087
language eng
recordid cdi_proquest_miscellaneous_2811568024
source DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection
title PtyLab.m/py/jl: a cross-platform, open-source inverse modeling toolbox for conventional and Fourier ptychography
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-06T00%3A34%3A30IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=PtyLab.m/py/jl:%20a%20cross-platform,%20open-source%20inverse%20modeling%20toolbox%20for%20conventional%20and%20Fourier%20ptychography&rft.jtitle=Optics%20express&rft.au=Loetgering,%20Lars&rft.date=2023-04-24&rft.volume=31&rft.issue=9&rft.spage=13763&rft.epage=13797&rft.pages=13763-13797&rft.issn=1094-4087&rft.eissn=1094-4087&rft_id=info:doi/10.1364/OE.485370&rft_dat=%3Cproquest_cross%3E2811568024%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2811568024&rft_id=info:pmid/37157257&rfr_iscdi=true