Spirosoma oryzicola sp. nov., isolated from dried rice husk
Strain RHs26 is an aerobic, Gram-stain-negative, non-flagellated and rod- or filamentous-shaped (1.0-1.1×2.3-50 µm) bacterium that was isolated from dried rice husk. It was positive for oxidase and catalase, hydrolysed starch and Tween 80, and weakly hydrolysed CM-cellulose. The strain grew at tempe...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2023-04, Vol.73 (4) |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Won, Miyoung Heo, Jun Weon, Hang-Yeon Lee, Daseul Han, Byeong-Hak Hong, Seung-Beom Kwon, Soon-Wo |
| description | Strain RHs26
is an aerobic, Gram-stain-negative, non-flagellated and rod- or filamentous-shaped (1.0-1.1×2.3-50 µm) bacterium that was isolated from dried rice husk. It was positive for oxidase and catalase, hydrolysed starch and Tween 80, and weakly hydrolysed CM-cellulose. The strain grew at temperatures between 10 and 37 °C (optimum, 28 °C), in 0-1 % NaCl (optimum, 0 %) and at pH 6.0-9.0 (optimum, pH 7.0-8.0). The predominant membrane fatty acids were summed feature 3 (C
7
and/or C
6
), C
5
, iso-C
and iso-C
3-OH. The major polar lipids were phosphatidylethanolamine, an unidentified aminolipid, two unidentified aminophospholipids and two unidentified lipids. The predominant quinone was menaquinone MK-7. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain RHs26
belongs to the genus
, presenting the highest sequence similarity to
S7-3-3
(95.8 %). The genomic DNA G+C content of strain RHs26
was 49.5 %. Strain RHs26
showed the highest orthologous average nucleotide identity (OrthoANI) and digital DNA-DNA hybridization (dDDH) values of 76.4 % and 20.0 % with
KCTC 52727
while sharing OrthoANI and dDDH values of 74.6 % and 19.2 % with
KCTC 52035
, the closest relative in the phylogenomic tree. Based on the results of a polyphasic taxonomic study, strain RHs26
represents a novel species in the genus
, for which the name
sp. nov. is proposed. The type strain is RHs26
(=JCM 35224
=KACC 17318
). |
| doi_str_mv | 10.1099/ijsem.0.005837 |
| format | Article |
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is an aerobic, Gram-stain-negative, non-flagellated and rod- or filamentous-shaped (1.0-1.1×2.3-50 µm) bacterium that was isolated from dried rice husk. It was positive for oxidase and catalase, hydrolysed starch and Tween 80, and weakly hydrolysed CM-cellulose. The strain grew at temperatures between 10 and 37 °C (optimum, 28 °C), in 0-1 % NaCl (optimum, 0 %) and at pH 6.0-9.0 (optimum, pH 7.0-8.0). The predominant membrane fatty acids were summed feature 3 (C
7
and/or C
6
), C
5
, iso-C
and iso-C
3-OH. The major polar lipids were phosphatidylethanolamine, an unidentified aminolipid, two unidentified aminophospholipids and two unidentified lipids. The predominant quinone was menaquinone MK-7. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain RHs26
belongs to the genus
, presenting the highest sequence similarity to
S7-3-3
(95.8 %). The genomic DNA G+C content of strain RHs26
was 49.5 %. Strain RHs26
showed the highest orthologous average nucleotide identity (OrthoANI) and digital DNA-DNA hybridization (dDDH) values of 76.4 % and 20.0 % with
KCTC 52727
while sharing OrthoANI and dDDH values of 74.6 % and 19.2 % with
KCTC 52035
, the closest relative in the phylogenomic tree. Based on the results of a polyphasic taxonomic study, strain RHs26
represents a novel species in the genus
, for which the name
sp. nov. is proposed. The type strain is RHs26
(=JCM 35224
=KACC 17318
).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.005837</identifier><identifier>PMID: 37078558</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Typing Techniques ; Base Composition ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Oryza ; Phospholipids - chemistry ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Soil Microbiology ; Vitamin K 2 - chemistry</subject><ispartof>International journal of systematic and evolutionary microbiology, 2023-04, Vol.73 (4)</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c250t-d4e38427638d0d47a1bb72ff699bced541e1597082225d9e4a848a5cb1003a1d3</cites><orcidid>0000-0002-6420-4702</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37078558$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Won, Miyoung</creatorcontrib><creatorcontrib>Heo, Jun</creatorcontrib><creatorcontrib>Weon, Hang-Yeon</creatorcontrib><creatorcontrib>Lee, Daseul</creatorcontrib><creatorcontrib>Han, Byeong-Hak</creatorcontrib><creatorcontrib>Hong, Seung-Beom</creatorcontrib><creatorcontrib>Kwon, Soon-Wo</creatorcontrib><title>Spirosoma oryzicola sp. nov., isolated from dried rice husk</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>Strain RHs26
is an aerobic, Gram-stain-negative, non-flagellated and rod- or filamentous-shaped (1.0-1.1×2.3-50 µm) bacterium that was isolated from dried rice husk. It was positive for oxidase and catalase, hydrolysed starch and Tween 80, and weakly hydrolysed CM-cellulose. The strain grew at temperatures between 10 and 37 °C (optimum, 28 °C), in 0-1 % NaCl (optimum, 0 %) and at pH 6.0-9.0 (optimum, pH 7.0-8.0). The predominant membrane fatty acids were summed feature 3 (C
7
and/or C
6
), C
5
, iso-C
and iso-C
3-OH. The major polar lipids were phosphatidylethanolamine, an unidentified aminolipid, two unidentified aminophospholipids and two unidentified lipids. The predominant quinone was menaquinone MK-7. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain RHs26
belongs to the genus
, presenting the highest sequence similarity to
S7-3-3
(95.8 %). The genomic DNA G+C content of strain RHs26
was 49.5 %. Strain RHs26
showed the highest orthologous average nucleotide identity (OrthoANI) and digital DNA-DNA hybridization (dDDH) values of 76.4 % and 20.0 % with
KCTC 52727
while sharing OrthoANI and dDDH values of 74.6 % and 19.2 % with
KCTC 52035
, the closest relative in the phylogenomic tree. Based on the results of a polyphasic taxonomic study, strain RHs26
represents a novel species in the genus
, for which the name
sp. nov. is proposed. The type strain is RHs26
(=JCM 35224
=KACC 17318
).</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Oryza</subject><subject>Phospholipids - chemistry</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Microbiology</subject><subject>Vitamin K 2 - chemistry</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kEtPwzAQhC0EoqVw5Yhy5EDC-hXb4oQqXlIlDsDZcmJHuCR1sBuk8usJtPS0s6vZkeZD6BxDgUGpa79MriugAOCSigM0xawscw6UHe41KSfoJKUlwHgAOEYTKkBIzuUU3bz0PoYUOpOFuPn2dWhNlvoiW4Wv4irzadzXzmZNDF1mox9l9LXL3of0cYqOGtMmd7abM_R2f_c6f8wXzw9P89tFXhMO69wyRyUjoqTSgmXC4KoSpGlKparaWc6ww1wJkIQQbpVjRjJpeF1hAGqwpTN0uc3tY_gcXFrrzqfata1ZuTAkTSRQVXJOyWgtttZ6LJWia3QffWfiRmPQv8D0HzANegtsfLjYZQ9V5-ze_k-I_gB8O2Xu</recordid><startdate>20230401</startdate><enddate>20230401</enddate><creator>Won, Miyoung</creator><creator>Heo, Jun</creator><creator>Weon, Hang-Yeon</creator><creator>Lee, Daseul</creator><creator>Han, Byeong-Hak</creator><creator>Hong, Seung-Beom</creator><creator>Kwon, Soon-Wo</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-6420-4702</orcidid></search><sort><creationdate>20230401</creationdate><title>Spirosoma oryzicola sp. nov., isolated from dried rice husk</title><author>Won, Miyoung ; Heo, Jun ; Weon, Hang-Yeon ; Lee, Daseul ; Han, Byeong-Hak ; Hong, Seung-Beom ; Kwon, Soon-Wo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c250t-d4e38427638d0d47a1bb72ff699bced541e1597082225d9e4a848a5cb1003a1d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Oryza</topic><topic>Phospholipids - chemistry</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Microbiology</topic><topic>Vitamin K 2 - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Won, Miyoung</creatorcontrib><creatorcontrib>Heo, Jun</creatorcontrib><creatorcontrib>Weon, Hang-Yeon</creatorcontrib><creatorcontrib>Lee, Daseul</creatorcontrib><creatorcontrib>Han, Byeong-Hak</creatorcontrib><creatorcontrib>Hong, Seung-Beom</creatorcontrib><creatorcontrib>Kwon, Soon-Wo</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Won, Miyoung</au><au>Heo, Jun</au><au>Weon, Hang-Yeon</au><au>Lee, Daseul</au><au>Han, Byeong-Hak</au><au>Hong, Seung-Beom</au><au>Kwon, Soon-Wo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Spirosoma oryzicola sp. nov., isolated from dried rice husk</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2023-04-01</date><risdate>2023</risdate><volume>73</volume><issue>4</issue><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>Strain RHs26
is an aerobic, Gram-stain-negative, non-flagellated and rod- or filamentous-shaped (1.0-1.1×2.3-50 µm) bacterium that was isolated from dried rice husk. It was positive for oxidase and catalase, hydrolysed starch and Tween 80, and weakly hydrolysed CM-cellulose. The strain grew at temperatures between 10 and 37 °C (optimum, 28 °C), in 0-1 % NaCl (optimum, 0 %) and at pH 6.0-9.0 (optimum, pH 7.0-8.0). The predominant membrane fatty acids were summed feature 3 (C
7
and/or C
6
), C
5
, iso-C
and iso-C
3-OH. The major polar lipids were phosphatidylethanolamine, an unidentified aminolipid, two unidentified aminophospholipids and two unidentified lipids. The predominant quinone was menaquinone MK-7. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain RHs26
belongs to the genus
, presenting the highest sequence similarity to
S7-3-3
(95.8 %). The genomic DNA G+C content of strain RHs26
was 49.5 %. Strain RHs26
showed the highest orthologous average nucleotide identity (OrthoANI) and digital DNA-DNA hybridization (dDDH) values of 76.4 % and 20.0 % with
KCTC 52727
while sharing OrthoANI and dDDH values of 74.6 % and 19.2 % with
KCTC 52035
, the closest relative in the phylogenomic tree. Based on the results of a polyphasic taxonomic study, strain RHs26
represents a novel species in the genus
, for which the name
sp. nov. is proposed. The type strain is RHs26
(=JCM 35224
=KACC 17318
).</abstract><cop>England</cop><pmid>37078558</pmid><doi>10.1099/ijsem.0.005837</doi><orcidid>https://orcid.org/0000-0002-6420-4702</orcidid></addata></record> |
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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Base Composition DNA, Bacterial - genetics Fatty Acids - chemistry Oryza Phospholipids - chemistry Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Soil Microbiology Vitamin K 2 - chemistry |
| title | Spirosoma oryzicola sp. nov., isolated from dried rice husk |
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